INFO: SVN version, compile time, version >>> $Id: FindER_1_0_0.java 127368 2017-02-15 23:46:04Z mbilenky $	v 1.0.1e
####################################################################################
#
# v 1.0.1e (beta), February 15, 2017 : Please report problems to:  mbilenky@bcgsc.ca
#
####################################################################################
INFO: SVN version, compile time >>> $Id: BAMReader_1_0_0.java 125718 2016-12-06 04:23:24Z mbilenky $
INFO: analyzing bam file >>> /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam
INFO: using samtools >>> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools
INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -h /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam
INFO: generated chromosome length map for 84 chromosomes
INFO: read length 75 bp
INFO: SVN version, compile time >>> $Id: BAMReader_1_0_0.java 125718 2016-12-06 04:23:24Z mbilenky $
INFO: analyzing bam file >>> /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam
INFO: using samtools >>> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools
INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -h /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam
INFO: generated chromosome length map for 84 chromosomes
INFO: read length 75 bp
INFO: no external blacklisting.
INFO: outputting enriched regions (ER) into /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/FindER.1.0.1e-A77297.CBKY8ANXX_4.v.A77301/A77297.CBKY8ANXX_4.vs.A77301.CBKY8ANXX_4.FDR_0.05

INFO: profiling region >>> GL000199.1:1-169874
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000199.1:1-169874
. 2400 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000199.1:1-169874
. 5699 fragments are accepted.
INFO: generating distance distribution between fragment starts ... INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view  -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000199.1:1-169874
 inferred bin size 127 (bp). [will be used to bin 'signal' and 'input']


WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000219.1:1-179198
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000219.1:1-179198
. 1844 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000219.1:1-179198
. 3301 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000217.1:1-172149
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000217.1:1-172149
. 112 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000217.1:1-172149
. 203 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000191.1:1-106433
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000191.1:1-106433
. 117 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000191.1:1-106433
. 179 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000193.1:1-189789
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000193.1:1-189789
. 1197 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000193.1:1-189789
. 2262 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000195.1:1-182896
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000195.1:1-182896
. 2562 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000195.1:1-182896
. 4779 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000197.1:1-37175
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000197.1:1-37175
. 2 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000197.1:1-37175
. 3 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000230.1:1-43691
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000230.1:1-43691
. 188 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000230.1:1-43691
. 308 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000236.1:1-41934
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000236.1:1-41934
. 7 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000236.1:1-41934
. 11 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000211.1:1-166566
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000211.1:1-166566
. 472 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000211.1:1-166566
. 1052 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000232.1:1-40652
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000232.1:1-40652
. 920 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000232.1:1-40652
. 1359 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 3 [total length = 564 (bp), fraction of region length = 0.013874] with fraction of all sequences found in enriched regions = 0.000040

INFO: profiling region >>> GL000238.1:1-39939
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000238.1:1-39939
. 24 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000238.1:1-39939
. 60 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000215.1:1-172545
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000215.1:1-172545
. 26 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000215.1:1-172545
. 43 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> 10:1-135534747
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam 10:1-135534747
. 467189 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 10:1-135534747
... 1126423 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 7545 [total length = 9589695 (bp), fraction of region length = 0.070755] with fraction of all sequences found in enriched regions = 0.059814

INFO: profiling region >>> GL000234.1:1-40531
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000234.1:1-40531
. 695 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000234.1:1-40531
. 1329 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000213.1:1-164239
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000213.1:1-164239
. 83 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000213.1:1-164239
. 224 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> 11:1-135006516
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam 11:1-135006516
. 437943 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 11:1-135006516
... 1041645 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 7676 [total length = 1957380 (bp), fraction of region length = 0.014498] with fraction of all sequences found in enriched regions = 0.034823

INFO: profiling region >>> 12:1-133851895
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam 12:1-133851895
. 421269 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 12:1-133851895
... 1104918 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 8391 [total length = 2391435 (bp), fraction of region length = 0.017866] with fraction of all sequences found in enriched regions = 0.037335

INFO: profiling region >>> GL000209.1:1-159169
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000209.1:1-159169
. 172 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000209.1:1-159169
. 298 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> 13:1-115169878
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam 13:1-115169878
. 209925 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 13:1-115169878
.. 651536 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 6251 [total length = 1594005 (bp), fraction of region length = 0.013840] with fraction of all sequences found in enriched regions = 0.041049

INFO: profiling region >>> 14:1-107349540
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam 14:1-107349540
. 273502 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 14:1-107349540
.. 679103 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 5126 [total length = 1460910 (bp), fraction of region length = 0.013609] with fraction of all sequences found in enriched regions = 0.033505

INFO: profiling region >>> GL000207.1:1-4262
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000207.1:1-4262
. 19 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000207.1:1-4262
. 62 fragments are accepted.
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000228.1:1-129120
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000228.1:1-129120
. 631 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000228.1:1-129120
. 806 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> 15:1-102531392
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam 15:1-102531392
. 304085 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 15:1-102531392
.. 659439 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 4821 [total length = 1373985 (bp), fraction of region length = 0.013401] with fraction of all sequences found in enriched regions = 0.030433

INFO: profiling region >>> 16:1-90354753
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam 16:1-90354753
. 356527 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 16:1-90354753
.. 706349 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 5278 [total length = 1345890 (bp), fraction of region length = 0.014896] with fraction of all sequences found in enriched regions = 0.047282

INFO: profiling region >>> 17:1-81195210
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam 17:1-81195210
. 381577 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 17:1-81195210
.. 726313 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 4001 [total length = 1140285 (bp), fraction of region length = 0.014044] with fraction of all sequences found in enriched regions = 0.028314

INFO: profiling region >>> 18:1-78077248
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam 18:1-78077248
. 214306 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 18:1-78077248
.. 549198 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 4145 [total length = 654910 (bp), fraction of region length = 0.008388] with fraction of all sequences found in enriched regions = 0.041446

INFO: profiling region >>> MT:1-16569
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam MT:1-16569
. 17 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam MT:1-16569
. 63 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> 19:1-59128983
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam 19:1-59128983
. 316856 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 19:1-59128983
.. 559057 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 2716 [total length = 611100 (bp), fraction of region length = 0.010335] with fraction of all sequences found in enriched regions = 0.028242

INFO: profiling region >>> 1:1-249250621
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam 1:1-249250621
.. 776015 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 1:1-249250621
.... 1824333 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 14498 [total length = 3696990 (bp), fraction of region length = 0.014832] with fraction of all sequences found in enriched regions = 0.047370

INFO: profiling region >>> 2:1-243199373
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam 2:1-243199373
.. 625481 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 2:1-243199373
.... 1774639 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 14886 [total length = 4242510 (bp), fraction of region length = 0.017445] with fraction of all sequences found in enriched regions = 0.044482

INFO: profiling region >>> 3:1-198022430
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam 3:1-198022430
. 477632 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 3:1-198022430
... 1428964 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 14070 [total length = 3165750 (bp), fraction of region length = 0.015987] with fraction of all sequences found in enriched regions = 0.044874

INFO: profiling region >>> GL000241.1:1-42152
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000241.1:1-42152
. 541 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000241.1:1-42152
. 1024 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> 4:1-191154276
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam 4:1-191154276
. 383047 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 4:1-191154276
... 1261925 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 6972 [total length = 1101576 (bp), fraction of region length = 0.005763] with fraction of all sequences found in enriched regions = 0.041916

INFO: profiling region >>> 5:1-180915260
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam 5:1-180915260
. 431211 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 5:1-180915260
... 1261495 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 11393 [total length = 3326756 (bp), fraction of region length = 0.018388] with fraction of all sequences found in enriched regions = 0.040147

INFO: profiling region >>> 6:1-171115067
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam 6:1-171115067
. 406667 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 6:1-171115067
... 1229513 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 11644 [total length = 3050728 (bp), fraction of region length = 0.017829] with fraction of all sequences found in enriched regions = 0.050058

INFO: profiling region >>> 7:1-159138663
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam 7:1-159138663
. 437157 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 7:1-159138663
... 1155353 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 9704 [total length = 2474520 (bp), fraction of region length = 0.015549] with fraction of all sequences found in enriched regions = 0.044259

INFO: profiling region >>> 8:1-146364022
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam 8:1-146364022
. 375855 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 8:1-146364022
... 1045858 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 8128 [total length = 2316480 (bp), fraction of region length = 0.015827] with fraction of all sequences found in enriched regions = 0.036432

INFO: profiling region >>> 9:1-141213431
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam 9:1-141213431
. 366720 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 9:1-141213431
.. 873221 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 6635 [total length = 1691925 (bp), fraction of region length = 0.011981] with fraction of all sequences found in enriched regions = 0.035652

INFO: profiling region >>> GL000201.1:1-36148
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000201.1:1-36148
. 10 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000201.1:1-36148
. 11 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000247.1:1-36422
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000247.1:1-36422
. 64 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000247.1:1-36422
. 77 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000222.1:1-186861
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000222.1:1-186861
. 174 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000222.1:1-186861
. 356 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000249.1:1-38502
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000249.1:1-38502
. 1 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000249.1:1-38502
. 6 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000220.1:1-161802
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000220.1:1-161802
. 42999 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000220.1:1-161802
. 55874 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000226.1:1-15008
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000226.1:1-15008
. 1597 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000226.1:1-15008
. 2103 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000243.1:1-43341
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000243.1:1-43341
. 62 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000243.1:1-43341
. 128 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000205.1:1-174588
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000205.1:1-174588
. 2495 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000205.1:1-174588
. 4324 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> 20:1-63025520
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam 20:1-63025520
. 286069 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 20:1-63025520
.. 587318 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 4129 [total length = 1052895 (bp), fraction of region length = 0.016706] with fraction of all sequences found in enriched regions = 0.031551

INFO: profiling region >>> 21:1-48129895
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam 21:1-48129895
. 126843 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 21:1-48129895
. 281221 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 2326 [total length = 593130 (bp), fraction of region length = 0.012324] with fraction of all sequences found in enriched regions = 0.054770

INFO: profiling region >>> GL000245.1:1-36651
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000245.1:1-36651
. 17 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000245.1:1-36651
. 24 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000203.1:1-37498
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000203.1:1-37498
. 46 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000203.1:1-37498
. 89 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000224.1:1-179693
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000224.1:1-179693
. 3013 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000224.1:1-179693
. 4760 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 76 [total length = 17100 (bp), fraction of region length = 0.095162] with fraction of all sequences found in enriched regions = 0.280837

INFO: profiling region >>> 22:1-51304566
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam 22:1-51304566
. 198320 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 22:1-51304566
. 336568 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 1269 [total length = 323595 (bp), fraction of region length = 0.006307] with fraction of all sequences found in enriched regions = 0.016130

INFO: profiling region >>> GL000198.1:1-90085
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000198.1:1-90085
. 792 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000198.1:1-90085
. 1464 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000218.1:1-161147
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000218.1:1-161147
. 1821 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000218.1:1-161147
. 2506 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000239.1:1-33824
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000239.1:1-33824
. 34 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000239.1:1-33824
. 70 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000192.1:1-547496
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000192.1:1-547496
. 967 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000192.1:1-547496
. 2094 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000194.1:1-191469
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000194.1:1-191469
. 936 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000194.1:1-191469
. 1525 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000196.1:1-38914
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000196.1:1-38914
. 12 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000196.1:1-38914
. 21 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> X:1-155270560
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam X:1-155270560
. 341174 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam X:1-155270560
... 1007789 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 7513 [total length = 3095356 (bp), fraction of region length = 0.019935] with fraction of all sequences found in enriched regions = 0.031008

INFO: profiling region >>> GL000235.1:1-34474
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000235.1:1-34474
. 370 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000235.1:1-34474
. 513 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000212.1:1-186858
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000212.1:1-186858
. 1087 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000212.1:1-186858
. 2327 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> Y:1-59373566
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam Y:1-59373566
. 9083 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam Y:1-59373566
. 15483 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000210.1:1-27682
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000210.1:1-27682
. 12 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000210.1:1-27682
. 24 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000237.1:1-45867
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000237.1:1-45867
. 416 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000237.1:1-45867
. 826 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000231.1:1-27386
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000231.1:1-27386
. 331 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000231.1:1-27386
. 621 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000216.1:1-172294
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000216.1:1-172294
. 4804 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000216.1:1-172294
. 7091 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000233.1:1-45941
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000233.1:1-45941
. 237 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000233.1:1-45941
. 319 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000214.1:1-137718
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000214.1:1-137718
. 3390 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000214.1:1-137718
. 5026 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 16 [total length = 2528 (bp), fraction of region length = 0.018356] with fraction of all sequences found in enriched regions = 0.214407

INFO: profiling region >>> GL000208.1:1-92689
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000208.1:1-92689
. 1181 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000208.1:1-92689
. 2357 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000229.1:1-19913
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000229.1:1-19913
. 268 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000229.1:1-19913
. 467 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000206.1:1-41001
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000206.1:1-41001
. 27 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000206.1:1-41001
. 45 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000240.1:1-41933
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000240.1:1-41933
. 207 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000240.1:1-41933
. 288 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000246.1:1-38154
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000246.1:1-38154
. 25 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000246.1:1-38154
. 62 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000223.1:1-180455
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000223.1:1-180455
. 14 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000223.1:1-180455
. 25 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000200.1:1-187035
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000200.1:1-187035
 0 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000200.1:1-187035
 0 fragments are accepted.

INFO: profiling region >>> GL000248.1:1-39786
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000248.1:1-39786
. 38 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000248.1:1-39786
. 64 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000221.1:1-155397
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000221.1:1-155397
. 217 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000221.1:1-155397
. 393 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000242.1:1-43523
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000242.1:1-43523
. 30 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000242.1:1-43523
. 43 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000204.1:1-81310
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000204.1:1-81310
. 302 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000204.1:1-81310
. 536 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000227.1:1-128374
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000227.1:1-128374
. 18 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000227.1:1-128374
. 36 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000244.1:1-39929
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000244.1:1-39929
. 10 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000244.1:1-39929
. 45 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000202.1:1-40103
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000202.1:1-40103
. 122 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000202.1:1-40103
. 226 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000225.1:1-211173
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77297/A77297.CBKY8ANXX_4.bam GL000225.1:1-211173
. 8945 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000225.1:1-211173
. 11992 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...
INFO: Finished OK