INFO: SVN version, compile time, version >>> $Id: FindER_1_0_0.java 127368 2017-02-15 23:46:04Z mbilenky $ v 1.0.1e #################################################################################### # # v 1.0.1e (beta), February 15, 2017 : Please report problems to: mbilenky@bcgsc.ca # #################################################################################### INFO: SVN version, compile time >>> $Id: BAMReader_1_0_0.java 125718 2016-12-06 04:23:24Z mbilenky $ INFO: analyzing bam file >>> /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: using samtools >>> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -h /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: generated chromosome length map for 84 chromosomes INFO: read length 75 bp INFO: SVN version, compile time >>> $Id: BAMReader_1_0_0.java 125718 2016-12-06 04:23:24Z mbilenky $ INFO: analyzing bam file >>> /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: using samtools >>> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -h /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: generated chromosome length map for 84 chromosomes INFO: read length 75 bp INFO: no external blacklisting. INFO: outputting enriched regions (ER) into /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/FindER.1.0.1e-A77299.CBKY8ANXX_4.v.A77301/A77299.CBKY8ANXX_4.vs.A77301.CBKY8ANXX_4.FDR_0.05 INFO: profiling region >>> GL000199.1:1-169874 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000199.1:1-169874 . 5611 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000199.1:1-169874 . 5699 fragments are accepted. INFO: generating distance distribution between fragment starts ... INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000199.1:1-169874 inferred bin size 109 (bp). [will be used to bin 'signal' and 'input'] WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 27 [total length = 11799 (bp), fraction of region length = 0.069457] with fraction of all sequences found in enriched regions = 0.420242 INFO: profiling region >>> GL000219.1:1-179198 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000219.1:1-179198 . 4100 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000219.1:1-179198 . 3301 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000217.1:1-172149 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000217.1:1-172149 . 225 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000217.1:1-172149 . 203 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000191.1:1-106433 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000191.1:1-106433 . 158 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000191.1:1-106433 . 179 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000193.1:1-189789 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000193.1:1-189789 . 2807 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000193.1:1-189789 . 2262 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000195.1:1-182896 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000195.1:1-182896 . 5464 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000195.1:1-182896 . 4779 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 7 [total length = 770 (bp), fraction of region length = 0.004210] with fraction of all sequences found in enriched regions = 0.004493 INFO: profiling region >>> GL000197.1:1-37175 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000197.1:1-37175 . 7 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000197.1:1-37175 . 3 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000230.1:1-43691 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000230.1:1-43691 . 452 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000230.1:1-43691 . 308 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 0 [total length = 0 (bp), fraction of region length = 0.000000] with fraction of all sequences found in enriched regions = 0.000000 INFO: profiling region >>> GL000236.1:1-41934 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000236.1:1-41934 . 8 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000236.1:1-41934 . 11 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000211.1:1-166566 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000211.1:1-166566 . 1094 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000211.1:1-166566 . 1052 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000232.1:1-40652 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000232.1:1-40652 . 2015 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000232.1:1-40652 . 1359 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000238.1:1-39939 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000238.1:1-39939 . 64 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000238.1:1-39939 . 60 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000215.1:1-172545 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000215.1:1-172545 . 61 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000215.1:1-172545 . 43 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 10:1-135534747 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam 10:1-135534747 ... 1027962 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 10:1-135534747 ... 1126423 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 10200 [total length = 2733600 (bp), fraction of region length = 0.020169] with fraction of all sequences found in enriched regions = 0.065782 INFO: profiling region >>> GL000234.1:1-40531 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000234.1:1-40531 . 1521 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000234.1:1-40531 . 1329 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 0 [total length = 0 (bp), fraction of region length = 0.000000] with fraction of all sequences found in enriched regions = 0.000000 INFO: profiling region >>> GL000213.1:1-164239 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000213.1:1-164239 . 214 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000213.1:1-164239 . 224 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 11:1-135006516 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam 11:1-135006516 .. 947908 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 11:1-135006516 ... 1041645 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 11023 [total length = 2744727 (bp), fraction of region length = 0.020330] with fraction of all sequences found in enriched regions = 0.038358 INFO: profiling region >>> 12:1-133851895 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam 12:1-133851895 .. 924780 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 12:1-133851895 ... 1104918 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 10089 [total length = 2209491 (bp), fraction of region length = 0.016507] with fraction of all sequences found in enriched regions = 0.033806 INFO: profiling region >>> GL000209.1:1-159169 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000209.1:1-159169 . 343 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000209.1:1-159169 . 298 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 13:1-115169878 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam 13:1-115169878 .. 522322 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 13:1-115169878 .. 651536 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 6103 [total length = 1336557 (bp), fraction of region length = 0.011605] with fraction of all sequences found in enriched regions = 0.030035 INFO: profiling region >>> 14:1-107349540 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam 14:1-107349540 .. 594140 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 14:1-107349540 .. 679103 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 6949 [total length = 1521831 (bp), fraction of region length = 0.014176] with fraction of all sequences found in enriched regions = 0.034973 INFO: profiling region >>> GL000207.1:1-4262 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000207.1:1-4262 . 49 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000207.1:1-4262 . 62 fragments are accepted. WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000228.1:1-129120 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000228.1:1-129120 . 1306 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000228.1:1-129120 . 806 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 15:1-102531392 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam 15:1-102531392 .. 611544 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 15:1-102531392 .. 659439 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 6678 [total length = 1462482 (bp), fraction of region length = 0.014264] with fraction of all sequences found in enriched regions = 0.034729 INFO: profiling region >>> 16:1-90354753 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam 16:1-90354753 .. 680123 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 16:1-90354753 .. 706349 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 6264 [total length = 1747656 (bp), fraction of region length = 0.019342] with fraction of all sequences found in enriched regions = 0.055955 INFO: profiling region >>> 17:1-81195210 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam 17:1-81195210 .. 642553 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 17:1-81195210 .. 726313 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 6356 [total length = 1201284 (bp), fraction of region length = 0.014795] with fraction of all sequences found in enriched regions = 0.040684 INFO: profiling region >>> 18:1-78077248 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam 18:1-78077248 .. 506990 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 18:1-78077248 .. 549198 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 5522 [total length = 1209318 (bp), fraction of region length = 0.015489] with fraction of all sequences found in enriched regions = 0.042347 INFO: profiling region >>> MT:1-16569 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam MT:1-16569 . 35 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam MT:1-16569 . 63 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 19:1-59128983 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam 19:1-59128983 .. 533039 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 19:1-59128983 .. 559057 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 4159 [total length = 786051 (bp), fraction of region length = 0.013294] with fraction of all sequences found in enriched regions = 0.040163 INFO: profiling region >>> 1:1-249250621 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam 1:1-249250621 .... 1593963 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 1:1-249250621 .... 1824333 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 21117 [total length = 5891643 (bp), fraction of region length = 0.023637] with fraction of all sequences found in enriched regions = 0.053592 INFO: profiling region >>> 2:1-243199373 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam 2:1-243199373 ... 1470623 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 2:1-243199373 .... 1774639 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 19471 [total length = 4848279 (bp), fraction of region length = 0.019935] with fraction of all sequences found in enriched regions = 0.043794 INFO: profiling region >>> 3:1-198022430 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam 3:1-198022430 ... 1123418 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 3:1-198022430 ... 1428964 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 14649 [total length = 2929800 (bp), fraction of region length = 0.014795] with fraction of all sequences found in enriched regions = 0.033686 INFO: profiling region >>> GL000241.1:1-42152 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000241.1:1-42152 . 1187 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000241.1:1-42152 . 1024 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> 4:1-191154276 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam 4:1-191154276 ... 1035055 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 4:1-191154276 ... 1261925 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 15635 [total length = 5425345 (bp), fraction of region length = 0.028382] with fraction of all sequences found in enriched regions = 0.051878 INFO: profiling region >>> 5:1-180915260 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam 5:1-180915260 ... 1063666 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 5:1-180915260 ... 1261495 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 14290 [total length = 8073850 (bp), fraction of region length = 0.044628] with fraction of all sequences found in enriched regions = 0.036294 INFO: profiling region >>> 6:1-171115067 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam 6:1-171115067 ... 997442 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 6:1-171115067 ... 1229513 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 12173 [total length = 1339030 (bp), fraction of region length = 0.007825] with fraction of all sequences found in enriched regions = 0.040563 INFO: profiling region >>> 7:1-159138663 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam 7:1-159138663 ... 1023448 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 7:1-159138663 ... 1155353 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 12410 [total length = 2717790 (bp), fraction of region length = 0.017078] with fraction of all sequences found in enriched regions = 0.043619 INFO: profiling region >>> 8:1-146364022 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam 8:1-146364022 .. 927892 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 8:1-146364022 ... 1045858 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 11416 [total length = 2842584 (bp), fraction of region length = 0.019421] with fraction of all sequences found in enriched regions = 0.037360 INFO: profiling region >>> 9:1-141213431 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam 9:1-141213431 .. 796179 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 9:1-141213431 .. 873221 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 7960 [total length = 1743240 (bp), fraction of region length = 0.012345] with fraction of all sequences found in enriched regions = 0.033501 INFO: profiling region >>> GL000201.1:1-36148 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000201.1:1-36148 . 13 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000201.1:1-36148 . 11 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000247.1:1-36422 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000247.1:1-36422 . 127 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000247.1:1-36422 . 77 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000222.1:1-186861 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000222.1:1-186861 . 442 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000222.1:1-186861 . 356 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000249.1:1-38502 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000249.1:1-38502 . 5 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000249.1:1-38502 . 6 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000220.1:1-161802 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000220.1:1-161802 . 82751 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000220.1:1-161802 . 55874 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000226.1:1-15008 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000226.1:1-15008 . 3043 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000226.1:1-15008 . 2103 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000243.1:1-43341 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000243.1:1-43341 . 173 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000243.1:1-43341 . 128 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000205.1:1-174588 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000205.1:1-174588 . 5281 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000205.1:1-174588 . 4324 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 66 [total length = 20856 (bp), fraction of region length = 0.119458] with fraction of all sequences found in enriched regions = 0.096604 INFO: profiling region >>> 20:1-63025520 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam 20:1-63025520 .. 559750 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 20:1-63025520 .. 587318 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 5241 [total length = 1247358 (bp), fraction of region length = 0.019791] with fraction of all sequences found in enriched regions = 0.035069 INFO: profiling region >>> 21:1-48129895 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam 21:1-48129895 . 258085 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 21:1-48129895 . 281221 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 2749 [total length = 602031 (bp), fraction of region length = 0.012508] with fraction of all sequences found in enriched regions = 0.065724 INFO: profiling region >>> GL000245.1:1-36651 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000245.1:1-36651 . 26 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000245.1:1-36651 . 24 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000203.1:1-37498 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000203.1:1-37498 . 102 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000203.1:1-37498 . 89 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000224.1:1-179693 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000224.1:1-179693 . 6770 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000224.1:1-179693 . 4760 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 38 [total length = 7182 (bp), fraction of region length = 0.039968] with fraction of all sequences found in enriched regions = 0.234818 INFO: profiling region >>> 22:1-51304566 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam 22:1-51304566 . 328043 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam 22:1-51304566 . 336568 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 2380 [total length = 476000 (bp), fraction of region length = 0.009278] with fraction of all sequences found in enriched regions = 0.027230 INFO: profiling region >>> GL000198.1:1-90085 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000198.1:1-90085 . 1682 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000198.1:1-90085 . 1464 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000218.1:1-161147 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000218.1:1-161147 . 3706 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000218.1:1-161147 . 2506 fragments are accepted. WARNING: no significant bins (FDR=0.05)... INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 28 [total length = 420 (bp), fraction of region length = 0.002606] with fraction of all sequences found in enriched regions = 0.001390 INFO: profiling region >>> GL000239.1:1-33824 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000239.1:1-33824 . 83 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000239.1:1-33824 . 70 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000192.1:1-547496 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000192.1:1-547496 . 2240 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000192.1:1-547496 . 2094 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000194.1:1-191469 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000194.1:1-191469 . 2018 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000194.1:1-191469 . 1525 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000196.1:1-38914 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000196.1:1-38914 . 16 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000196.1:1-38914 . 21 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> X:1-155270560 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam X:1-155270560 .. 978503 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam X:1-155270560 ... 1007789 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 9666 [total length = 3934062 (bp), fraction of region length = 0.025337] with fraction of all sequences found in enriched regions = 0.028377 INFO: profiling region >>> GL000235.1:1-34474 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000235.1:1-34474 . 783 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000235.1:1-34474 . 513 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000212.1:1-186858 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000212.1:1-186858 . 2532 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000212.1:1-186858 . 2327 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> Y:1-59373566 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam Y:1-59373566 . 18658 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam Y:1-59373566 . 15483 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000210.1:1-27682 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000210.1:1-27682 . 22 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000210.1:1-27682 . 24 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000237.1:1-45867 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000237.1:1-45867 . 942 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000237.1:1-45867 . 826 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000231.1:1-27386 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000231.1:1-27386 . 776 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000231.1:1-27386 . 621 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000216.1:1-172294 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000216.1:1-172294 . 9602 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000216.1:1-172294 . 7091 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000233.1:1-45941 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000233.1:1-45941 . 433 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000233.1:1-45941 . 319 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000214.1:1-137718 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000214.1:1-137718 . 7279 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000214.1:1-137718 . 5026 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 30 [total length = 4200 (bp), fraction of region length = 0.030497] with fraction of all sequences found in enriched regions = 0.281169 INFO: profiling region >>> GL000208.1:1-92689 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000208.1:1-92689 . 2705 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000208.1:1-92689 . 2357 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 6 [total length = 18792 (bp), fraction of region length = 0.202743] with fraction of all sequences found in enriched regions = 0.103626 INFO: profiling region >>> GL000229.1:1-19913 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000229.1:1-19913 . 552 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000229.1:1-19913 . 467 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000206.1:1-41001 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000206.1:1-41001 . 29 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000206.1:1-41001 . 45 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000240.1:1-41933 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000240.1:1-41933 . 463 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000240.1:1-41933 . 288 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000246.1:1-38154 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000246.1:1-38154 . 44 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000246.1:1-38154 . 62 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000223.1:1-180455 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000223.1:1-180455 . 33 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000223.1:1-180455 . 25 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000200.1:1-187035 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000200.1:1-187035 0 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000200.1:1-187035 0 fragments are accepted. INFO: profiling region >>> GL000248.1:1-39786 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000248.1:1-39786 . 73 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000248.1:1-39786 . 64 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000221.1:1-155397 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000221.1:1-155397 . 502 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000221.1:1-155397 . 393 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000242.1:1-43523 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000242.1:1-43523 . 60 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000242.1:1-43523 . 43 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000204.1:1-81310 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000204.1:1-81310 . 709 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000204.1:1-81310 . 536 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000227.1:1-128374 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000227.1:1-128374 . 43 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000227.1:1-128374 . 36 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000244.1:1-39929 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000244.1:1-39929 . 33 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000244.1:1-39929 . 45 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000202.1:1-40103 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000202.1:1-40103 . 236 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000202.1:1-40103 . 226 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000225.1:1-211173 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77299/A77299.CBKY8ANXX_4.bam GL000225.1:1-211173 . 18719 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77301/A77301.CBKY8ANXX_4.bam GL000225.1:1-211173 . 11992 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: Finished OK