INFO: SVN version, compile time, version >>> $Id: FindER_1_0_0.java 127368 2017-02-15 23:46:04Z mbilenky $	v 1.0.1e
####################################################################################
#
# v 1.0.1e (beta), February 15, 2017 : Please report problems to:  mbilenky@bcgsc.ca
#
####################################################################################
INFO: SVN version, compile time >>> $Id: BAMReader_1_0_0.java 125718 2016-12-06 04:23:24Z mbilenky $
INFO: analyzing bam file >>> /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam
INFO: using samtools >>> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools
INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -h /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam
INFO: generated chromosome length map for 84 chromosomes
INFO: read length 75 bp
INFO: SVN version, compile time >>> $Id: BAMReader_1_0_0.java 125718 2016-12-06 04:23:24Z mbilenky $
INFO: analyzing bam file >>> /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam
INFO: using samtools >>> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools
INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -h /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam
INFO: generated chromosome length map for 84 chromosomes
INFO: read length 75 bp
INFO: no external blacklisting.
INFO: outputting enriched regions (ER) into /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/FindER.1.0.1e-A77304.CBKY8ANXX_4.v.A77306/A77304.CBKY8ANXX_4.vs.A77306.CBKY8ANXX_4.FDR_0.05

INFO: profiling region >>> GL000199.1:1-169874
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000199.1:1-169874
. 3668 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000199.1:1-169874
. 6927 fragments are accepted.
INFO: generating distance distribution between fragment starts ... INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view  -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000199.1:1-169874
 inferred bin size 115 (bp). [will be used to bin 'signal' and 'input']

WARNING: no significant bins (FDR=0.05)...
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 35 [total length = 20160 (bp), fraction of region length = 0.118676] with fraction of all sequences found in enriched regions = 0.443205

INFO: profiling region >>> GL000219.1:1-179198
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000219.1:1-179198
. 6070 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000219.1:1-179198
. 4991 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000217.1:1-172149
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000217.1:1-172149
. 494 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000217.1:1-172149
. 542 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000191.1:1-106433
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000191.1:1-106433
. 186 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000191.1:1-106433
. 189 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000193.1:1-189789
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000193.1:1-189789
. 3409 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000193.1:1-189789
. 3142 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 14 [total length = 3234 (bp), fraction of region length = 0.017040] with fraction of all sequences found in enriched regions = 0.151181

INFO: profiling region >>> GL000195.1:1-182896
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000195.1:1-182896
. 5302 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000195.1:1-182896
. 5364 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 38 [total length = 17518 (bp), fraction of region length = 0.095781] with fraction of all sequences found in enriched regions = 0.154299

INFO: profiling region >>> GL000197.1:1-37175
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000197.1:1-37175
. 7 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000197.1:1-37175
. 1 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000230.1:1-43691
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000230.1:1-43691
. 242 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000230.1:1-43691
. 235 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000236.1:1-41934
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000236.1:1-41934
. 29 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000236.1:1-41934
. 21 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000211.1:1-166566
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000211.1:1-166566
. 869 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000211.1:1-166566
. 1077 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000232.1:1-40652
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000232.1:1-40652
. 1491 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000232.1:1-40652
. 1355 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 0 [total length = 0 (bp), fraction of region length = 0.000000] with fraction of all sequences found in enriched regions = 0.000000

INFO: profiling region >>> GL000238.1:1-39939
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000238.1:1-39939
. 67 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000238.1:1-39939
. 72 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000215.1:1-172545
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000215.1:1-172545
. 72 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000215.1:1-172545
. 115 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> 10:1-135534747
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam 10:1-135534747
.. 869399 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam 10:1-135534747
... 1152474 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 13651 [total length = 4723246 (bp), fraction of region length = 0.034849] with fraction of all sequences found in enriched regions = 0.104006

INFO: profiling region >>> GL000234.1:1-40531
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000234.1:1-40531
. 1298 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000234.1:1-40531
. 1336 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000213.1:1-164239
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000213.1:1-164239
. 152 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000213.1:1-164239
. 192 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> 11:1-135006516
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam 11:1-135006516
.. 866393 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam 11:1-135006516
... 1128445 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 14634 [total length = 6746274 (bp), fraction of region length = 0.049970] with fraction of all sequences found in enriched regions = 0.089102

INFO: profiling region >>> 12:1-133851895
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam 12:1-133851895
.. 747847 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam 12:1-133851895
... 1100899 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 15202 [total length = 3511662 (bp), fraction of region length = 0.026235] with fraction of all sequences found in enriched regions = 0.091388

INFO: profiling region >>> GL000209.1:1-159169
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000209.1:1-159169
. 76 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000209.1:1-159169
. 56 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> 13:1-115169878
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam 13:1-115169878
. 377289 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam 13:1-115169878
.. 701057 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 8597 [total length = 1985907 (bp), fraction of region length = 0.017243] with fraction of all sequences found in enriched regions = 0.077268

INFO: profiling region >>> 14:1-107349540
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam 14:1-107349540
.. 527775 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam 14:1-107349540
.. 729202 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 9756 [total length = 2253636 (bp), fraction of region length = 0.020993] with fraction of all sequences found in enriched regions = 0.085144

INFO: profiling region >>> GL000207.1:1-4262
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000207.1:1-4262
. 39 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000207.1:1-4262
. 59 fragments are accepted.
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000228.1:1-129120
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000228.1:1-129120
. 1154 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000228.1:1-129120
. 598 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> 15:1-102531392
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam 15:1-102531392
.. 593858 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam 15:1-102531392
.. 698332 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 9392 [total length = 2451312 (bp), fraction of region length = 0.023908] with fraction of all sequences found in enriched regions = 0.078126

INFO: profiling region >>> 16:1-90354753
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam 16:1-90354753
.. 698638 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam 16:1-90354753
.. 765508 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 9559 [total length = 3307414 (bp), fraction of region length = 0.036605] with fraction of all sequences found in enriched regions = 0.093299

INFO: profiling region >>> 17:1-81195210
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam 17:1-81195210
.. 802295 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam 17:1-81195210
.. 803610 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 10727 [total length = 3067922 (bp), fraction of region length = 0.037785] with fraction of all sequences found in enriched regions = 0.099993

INFO: profiling region >>> 18:1-78077248
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam 18:1-78077248
. 387361 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam 18:1-78077248
.. 569837 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 7144 [total length = 1650264 (bp), fraction of region length = 0.021136] with fraction of all sequences found in enriched regions = 0.069736

INFO: profiling region >>> MT:1-16569
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam MT:1-16569
. 68 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam MT:1-16569
. 103 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> 19:1-59128983
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam 19:1-59128983
.. 782387 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam 19:1-59128983
.. 636090 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 6055 [total length = 1580355 (bp), fraction of region length = 0.026727] with fraction of all sequences found in enriched regions = 0.064117

INFO: profiling region >>> 1:1-249250621
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam 1:1-249250621
.... 1618308 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam 1:1-249250621
..... 2007414 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 31285 [total length = 10042485 (bp), fraction of region length = 0.040291] with fraction of all sequences found in enriched regions = 0.127737

INFO: profiling region >>> 2:1-243199373
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam 2:1-243199373
... 1181189 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam 2:1-243199373
.... 1953694 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 24402 [total length = 5636862 (bp), fraction of region length = 0.023178] with fraction of all sequences found in enriched regions = 0.087904

INFO: profiling region >>> 3:1-198022430
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam 3:1-198022430
.. 840976 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam 3:1-198022430
.... 1573426 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 18546 [total length = 4284126 (bp), fraction of region length = 0.021635] with fraction of all sequences found in enriched regions = 0.072374

INFO: profiling region >>> GL000241.1:1-42152
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000241.1:1-42152
. 941 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000241.1:1-42152
. 1036 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> 4:1-191154276
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam 4:1-191154276
.. 728763 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam 4:1-191154276
... 1367316 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 16490 [total length = 6612490 (bp), fraction of region length = 0.034592] with fraction of all sequences found in enriched regions = 0.101197

INFO: profiling region >>> 5:1-180915260
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam 5:1-180915260
.. 834568 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam 5:1-180915260
... 1367950 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 18204 [total length = 4751244 (bp), fraction of region length = 0.026262] with fraction of all sequences found in enriched regions = 0.089627

INFO: profiling region >>> 6:1-171115067
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam 6:1-171115067
.. 783300 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam 6:1-171115067
... 1372447 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 15688 [total length = 4016128 (bp), fraction of region length = 0.023470] with fraction of all sequences found in enriched regions = 0.092368

INFO: profiling region >>> 7:1-159138663
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam 7:1-159138663
.. 817802 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam 7:1-159138663
... 1270369 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 17862 [total length = 4661982 (bp), fraction of region length = 0.029295] with fraction of all sequences found in enriched regions = 0.094294

INFO: profiling region >>> 8:1-146364022
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam 8:1-146364022
.. 724246 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam 8:1-146364022
... 1133744 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 15539 [total length = 3123339 (bp), fraction of region length = 0.021340] with fraction of all sequences found in enriched regions = 0.089128

INFO: profiling region >>> 9:1-141213431
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam 9:1-141213431
.. 753247 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam 9:1-141213431
.. 955949 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 13224 [total length = 3054744 (bp), fraction of region length = 0.021632] with fraction of all sequences found in enriched regions = 0.108729

INFO: profiling region >>> GL000201.1:1-36148
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000201.1:1-36148
. 25 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000201.1:1-36148
. 17 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000247.1:1-36422
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000247.1:1-36422
. 55 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000247.1:1-36422
. 40 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000222.1:1-186861
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000222.1:1-186861
. 285 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000222.1:1-186861
. 289 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000249.1:1-38502
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000249.1:1-38502
. 5 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000249.1:1-38502
. 4 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000220.1:1-161802
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000220.1:1-161802
. 138238 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000220.1:1-161802
. 46076 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 1 [total length = 116 (bp), fraction of region length = 0.000717] with fraction of all sequences found in enriched regions = 0.000000

INFO: profiling region >>> GL000226.1:1-15008
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000226.1:1-15008
. 1667 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000226.1:1-15008
. 1436 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000243.1:1-43341
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000243.1:1-43341
. 144 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000243.1:1-43341
. 111 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000205.1:1-174588
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000205.1:1-174588
. 5594 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000205.1:1-174588
. 4234 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> 20:1-63025520
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam 20:1-63025520
.. 583448 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam 20:1-63025520
.. 573869 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 8016 [total length = 10148256 (bp), fraction of region length = 0.161018] with fraction of all sequences found in enriched regions = 0.082874

INFO: profiling region >>> 21:1-48129895
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam 21:1-48129895
. 235813 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam 21:1-48129895
. 296732 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 5046 [total length = 585336 (bp), fraction of region length = 0.012162] with fraction of all sequences found in enriched regions = 0.122730

INFO: profiling region >>> GL000245.1:1-36651
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000245.1:1-36651
. 21 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000245.1:1-36651
. 19 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000203.1:1-37498
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000203.1:1-37498
. 61 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000203.1:1-37498
. 115 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000224.1:1-179693
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000224.1:1-179693
. 10443 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000224.1:1-179693
. 6784 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 17 [total length = 3502 (bp), fraction of region length = 0.019489] with fraction of all sequences found in enriched regions = 0.186808

INFO: profiling region >>> 22:1-51304566
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam 22:1-51304566
. 442359 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam 22:1-51304566
. 372049 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 3567 [total length = 913152 (bp), fraction of region length = 0.017799] with fraction of all sequences found in enriched regions = 0.056605

INFO: profiling region >>> GL000198.1:1-90085
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000198.1:1-90085
. 1476 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000198.1:1-90085
. 1702 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000218.1:1-161147
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000218.1:1-161147
. 1679 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000218.1:1-161147
. 1244 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000239.1:1-33824
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000239.1:1-33824
. 56 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000239.1:1-33824
. 51 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000192.1:1-547496
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000192.1:1-547496
. 2450 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000192.1:1-547496
. 2044 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000194.1:1-191469
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000194.1:1-191469
. 2867 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000194.1:1-191469
. 1851 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000196.1:1-38914
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000196.1:1-38914
. 7 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000196.1:1-38914
. 20 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> X:1-155270560
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam X:1-155270560
. 298604 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam X:1-155270560
.. 565841 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000235.1:1-34474
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000235.1:1-34474
. 456 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000235.1:1-34474
. 359 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000212.1:1-186858
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000212.1:1-186858
. 1556 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000212.1:1-186858
. 1808 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> Y:1-59373566
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam Y:1-59373566
. 34027 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam Y:1-59373566
. 17873 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000210.1:1-27682
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000210.1:1-27682
. 43 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000210.1:1-27682
. 27 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000237.1:1-45867
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000237.1:1-45867
. 650 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000237.1:1-45867
. 575 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000231.1:1-27386
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000231.1:1-27386
. 739 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000231.1:1-27386
. 665 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 1 [total length = 231 (bp), fraction of region length = 0.008435] with fraction of all sequences found in enriched regions = 0.000000

INFO: profiling region >>> GL000216.1:1-172294
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000216.1:1-172294
. 8403 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000216.1:1-172294
. 6204 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000233.1:1-45941
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000233.1:1-45941
. 268 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000233.1:1-45941
. 241 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000214.1:1-137718
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000214.1:1-137718
. 5281 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000214.1:1-137718
. 3656 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 25 [total length = 15150 (bp), fraction of region length = 0.110007] with fraction of all sequences found in enriched regions = 0.229882

INFO: profiling region >>> GL000208.1:1-92689
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000208.1:1-92689
. 1726 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000208.1:1-92689
. 2112 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 6 [total length = 2076 (bp), fraction of region length = 0.022397] with fraction of all sequences found in enriched regions = 0.248837

INFO: profiling region >>> GL000229.1:1-19913
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000229.1:1-19913
. 613 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000229.1:1-19913
. 408 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 1 [total length = 171 (bp), fraction of region length = 0.008587] with fraction of all sequences found in enriched regions = 0.000110

INFO: profiling region >>> GL000206.1:1-41001
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000206.1:1-41001
. 39 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000206.1:1-41001
. 31 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000240.1:1-41933
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000240.1:1-41933
. 106 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000240.1:1-41933
. 69 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000246.1:1-38154
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000246.1:1-38154
. 56 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000246.1:1-38154
. 53 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000223.1:1-180455
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000223.1:1-180455
. 64 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000223.1:1-180455
. 37 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000200.1:1-187035
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000200.1:1-187035
 0 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000200.1:1-187035
 0 fragments are accepted.

INFO: profiling region >>> GL000248.1:1-39786
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000248.1:1-39786
. 51 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000248.1:1-39786
. 37 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000221.1:1-155397
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000221.1:1-155397
. 297 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000221.1:1-155397
. 316 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000242.1:1-43523
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000242.1:1-43523
. 87 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000242.1:1-43523
. 41 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000204.1:1-81310
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000204.1:1-81310
. 1450 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000204.1:1-81310
. 571 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 1 [total length = 146 (bp), fraction of region length = 0.001796] with fraction of all sequences found in enriched regions = 0.000000

INFO: profiling region >>> GL000227.1:1-128374
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000227.1:1-128374
. 72 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000227.1:1-128374
. 78 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000244.1:1-39929
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000244.1:1-39929
. 16 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000244.1:1-39929
. 15 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000202.1:1-40103
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000202.1:1-40103
. 478 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000202.1:1-40103
. 232 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000225.1:1-211173
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77304/A77304.CBKY8ANXX_4.bam GL000225.1:1-211173
. 17230 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77306/A77306.CBKY8ANXX_4.bam GL000225.1:1-211173
. 9869 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 15 [total length = 1740 (bp), fraction of region length = 0.008240] with fraction of all sequences found in enriched regions = 0.174520
INFO: Finished OK