INFO: SVN version, compile time, version >>> $Id: FindER_1_0_0.java 127368 2017-02-15 23:46:04Z mbilenky $	v 1.0.1e
####################################################################################
#
# v 1.0.1e (beta), February 15, 2017 : Please report problems to:  mbilenky@bcgsc.ca
#
####################################################################################
INFO: SVN version, compile time >>> $Id: BAMReader_1_0_0.java 125718 2016-12-06 04:23:24Z mbilenky $
INFO: analyzing bam file >>> /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam
INFO: using samtools >>> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools
INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -h /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam
INFO: generated chromosome length map for 84 chromosomes
INFO: read length 75 bp
INFO: SVN version, compile time >>> $Id: BAMReader_1_0_0.java 125718 2016-12-06 04:23:24Z mbilenky $
INFO: analyzing bam file >>> /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam
INFO: using samtools >>> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools
INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -h /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam
INFO: generated chromosome length map for 84 chromosomes
INFO: read length 75 bp
INFO: no external blacklisting.
INFO: outputting enriched regions (ER) into /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/FindER.1.0.1e-A77313.CBKY8ANXX_4.v.A77316/A77313.CBKY8ANXX_4.vs.A77316.CBKY8ANXX_4.FDR_0.05

INFO: profiling region >>> GL000199.1:1-169874
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000199.1:1-169874
. 2963 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000199.1:1-169874
. 5791 fragments are accepted.
INFO: generating distance distribution between fragment starts ... INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view  -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000199.1:1-169874
 inferred bin size 109 (bp). [will be used to bin 'signal' and 'input']


WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000219.1:1-179198
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000219.1:1-179198
. 1589 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000219.1:1-179198
. 2991 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000217.1:1-172149
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000217.1:1-172149
. 181 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000217.1:1-172149
. 315 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000191.1:1-106433
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000191.1:1-106433
. 55 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000191.1:1-106433
. 117 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000193.1:1-189789
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000193.1:1-189789
. 2064 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000193.1:1-189789
. 3218 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000195.1:1-182896
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000195.1:1-182896
. 1740 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000195.1:1-182896
. 4123 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000197.1:1-37175
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000197.1:1-37175
. 5 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000197.1:1-37175
. 4 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000230.1:1-43691
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000230.1:1-43691
. 245 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000230.1:1-43691
. 388 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000236.1:1-41934
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000236.1:1-41934
. 12 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000236.1:1-41934
. 15 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000211.1:1-166566
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000211.1:1-166566
. 482 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000211.1:1-166566
. 938 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000232.1:1-40652
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000232.1:1-40652
. 877 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000232.1:1-40652
. 1381 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000238.1:1-39939
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000238.1:1-39939
. 11 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000238.1:1-39939
. 31 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000215.1:1-172545
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000215.1:1-172545
. 30 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000215.1:1-172545
. 76 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> 10:1-135534747
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam 10:1-135534747
. 356060 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam 10:1-135534747
.. 921884 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 8218 [total length = 2046282 (bp), fraction of region length = 0.015098] with fraction of all sequences found in enriched regions = 0.075144

INFO: profiling region >>> GL000234.1:1-40531
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000234.1:1-40531
. 708 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000234.1:1-40531
. 1241 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000213.1:1-164239
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000213.1:1-164239
. 85 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000213.1:1-164239
. 162 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> 11:1-135006516
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam 11:1-135006516
. 322345 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam 11:1-135006516
.. 870362 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 10203 [total length = 2540547 (bp), fraction of region length = 0.018818] with fraction of all sequences found in enriched regions = 0.045546

INFO: profiling region >>> 12:1-133851895
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam 12:1-133851895
. 299648 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam 12:1-133851895
.. 847692 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 8955 [total length = 1961145 (bp), fraction of region length = 0.014652] with fraction of all sequences found in enriched regions = 0.039751

INFO: profiling region >>> GL000209.1:1-159169
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000209.1:1-159169
. 42 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000209.1:1-159169
. 164 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> 13:1-115169878
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam 13:1-115169878
. 178885 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam 13:1-115169878
.. 544426 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> 14:1-107349540
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam 14:1-107349540
. 213941 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam 14:1-107349540
.. 582589 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 5325 [total length = 4228050 (bp), fraction of region length = 0.039386] with fraction of all sequences found in enriched regions = 0.034439

INFO: profiling region >>> GL000207.1:1-4262
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000207.1:1-4262
. 10 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000207.1:1-4262
. 45 fragments are accepted.
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000228.1:1-129120
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000228.1:1-129120
. 604 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000228.1:1-129120
. 644 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> 15:1-102531392
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam 15:1-102531392
. 219773 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam 15:1-102531392
.. 572727 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 5622 [total length = 1399878 (bp), fraction of region length = 0.013653] with fraction of all sequences found in enriched regions = 0.040396

INFO: profiling region >>> 16:1-90354753
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam 16:1-90354753
. 284730 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam 16:1-90354753
.. 626235 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 4751 [total length = 897939 (bp), fraction of region length = 0.009938] with fraction of all sequences found in enriched regions = 0.052043

INFO: profiling region >>> 17:1-81195210
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam 17:1-81195210
. 265199 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam 17:1-81195210
.. 635417 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 4576 [total length = 1002144 (bp), fraction of region length = 0.012342] with fraction of all sequences found in enriched regions = 0.036276

INFO: profiling region >>> 18:1-78077248
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam 18:1-78077248
. 170637 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam 18:1-78077248
. 462924 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> MT:1-16569
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam MT:1-16569
. 64 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam MT:1-16569
. 54 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> 19:1-59128983
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam 19:1-59128983
. 251819 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam 19:1-59128983
.. 497483 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 3434 [total length = 752046 (bp), fraction of region length = 0.012719] with fraction of all sequences found in enriched regions = 0.035560

INFO: profiling region >>> 1:1-249250621
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam 1:1-249250621
.. 567817 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam 1:1-249250621
.... 1550290 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 15715 [total length = 3913035 (bp), fraction of region length = 0.015699] with fraction of all sequences found in enriched regions = 0.056260

INFO: profiling region >>> 2:1-243199373
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam 2:1-243199373
. 482536 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam 2:1-243199373
.... 1483387 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 18183 [total length = 3636600 (bp), fraction of region length = 0.014953] with fraction of all sequences found in enriched regions = 0.054146

INFO: profiling region >>> 3:1-198022430
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam 3:1-198022430
. 373029 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam 3:1-198022430
... 1185702 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 13690 [total length = 2998110 (bp), fraction of region length = 0.015140] with fraction of all sequences found in enriched regions = 0.043396

INFO: profiling region >>> GL000241.1:1-42152
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000241.1:1-42152
. 613 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000241.1:1-42152
. 958 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> 4:1-191154276
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam 4:1-191154276
. 324467 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam 4:1-191154276
... 1049956 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> 5:1-180915260
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam 5:1-180915260
. 350611 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam 5:1-180915260
... 1050248 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 13318 [total length = 2916642 (bp), fraction of region length = 0.016122] with fraction of all sequences found in enriched regions = 0.045854

INFO: profiling region >>> 6:1-171115067
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam 6:1-171115067
. 318761 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam 6:1-171115067
... 1032830 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> 7:1-159138663
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam 7:1-159138663
. 360903 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam 7:1-159138663
.. 979546 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 12021 [total length = 1322310 (bp), fraction of region length = 0.008309] with fraction of all sequences found in enriched regions = 0.061336

INFO: profiling region >>> 8:1-146364022
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam 8:1-146364022
. 297984 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam 8:1-146364022
.. 872504 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 9376 [total length = 1772064 (bp), fraction of region length = 0.012107] with fraction of all sequences found in enriched regions = 0.041424

INFO: profiling region >>> 9:1-141213431
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam 9:1-141213431
. 280569 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam 9:1-141213431
.. 745178 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 8724 [total length = 1910556 (bp), fraction of region length = 0.013530] with fraction of all sequences found in enriched regions = 0.046032

INFO: profiling region >>> GL000201.1:1-36148
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000201.1:1-36148
. 11 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000201.1:1-36148
. 9 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000247.1:1-36422
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000247.1:1-36422
. 27 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000247.1:1-36422
. 57 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000222.1:1-186861
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000222.1:1-186861
. 181 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000222.1:1-186861
. 327 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000249.1:1-38502
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000249.1:1-38502
. 2 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000249.1:1-38502
. 1 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000220.1:1-161802
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000220.1:1-161802
. 40791 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000220.1:1-161802
. 51809 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 12 [total length = 346404 (bp), fraction of region length = 2.140913] with fraction of all sequences found in enriched regions = 0.006169

INFO: profiling region >>> GL000226.1:1-15008
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000226.1:1-15008
. 1302 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000226.1:1-15008
. 1781 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000243.1:1-43341
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000243.1:1-43341
. 88 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000243.1:1-43341
. 108 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000205.1:1-174588
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000205.1:1-174588
. 2194 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000205.1:1-174588
. 4020 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 37 [total length = 4070 (bp), fraction of region length = 0.023312] with fraction of all sequences found in enriched regions = 0.010422

INFO: profiling region >>> 20:1-63025520
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam 20:1-63025520
. 195470 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam 20:1-63025520
. 461041 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 3483 [total length = 762777 (bp), fraction of region length = 0.012103] with fraction of all sequences found in enriched regions = 0.030725

INFO: profiling region >>> 21:1-48129895
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam 21:1-48129895
. 102136 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam 21:1-48129895
. 245206 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 3253 [total length = 712407 (bp), fraction of region length = 0.014802] with fraction of all sequences found in enriched regions = 0.083708

INFO: profiling region >>> GL000245.1:1-36651
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000245.1:1-36651
. 15 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000245.1:1-36651
. 30 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000203.1:1-37498
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000203.1:1-37498
. 58 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000203.1:1-37498
. 90 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000224.1:1-179693
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000224.1:1-179693
. 3783 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000224.1:1-179693
. 5399 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 34 [total length = 7446 (bp), fraction of region length = 0.041437] with fraction of all sequences found in enriched regions = 0.290920

INFO: profiling region >>> 22:1-51304566
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam 22:1-51304566
. 139730 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam 22:1-51304566
. 297100 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 2083 [total length = 495754 (bp), fraction of region length = 0.009663] with fraction of all sequences found in enriched regions = 0.028204

INFO: profiling region >>> GL000198.1:1-90085
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000198.1:1-90085
. 894 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000198.1:1-90085
. 1426 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 0 [total length = 0 (bp), fraction of region length = 0.000000] with fraction of all sequences found in enriched regions = 0.000000

INFO: profiling region >>> GL000218.1:1-161147
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000218.1:1-161147
. 1416 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000218.1:1-161147
. 2269 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000239.1:1-33824
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000239.1:1-33824
. 30 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000239.1:1-33824
. 62 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000192.1:1-547496
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000192.1:1-547496
. 651 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000192.1:1-547496
. 1651 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000194.1:1-191469
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000194.1:1-191469
. 710 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000194.1:1-191469
. 1156 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000196.1:1-38914
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000196.1:1-38914
. 3 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000196.1:1-38914
. 12 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> X:1-155270560
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam X:1-155270560
. 284565 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam X:1-155270560
.. 875091 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000235.1:1-34474
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000235.1:1-34474
. 345 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000235.1:1-34474
. 534 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000212.1:1-186858
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000212.1:1-186858
. 821 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000212.1:1-186858
. 1610 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> Y:1-59373566
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam Y:1-59373566
. 9011 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam Y:1-59373566
. 13943 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000210.1:1-27682
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000210.1:1-27682
. 3 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000210.1:1-27682
. 15 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000237.1:1-45867
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000237.1:1-45867
. 320 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000237.1:1-45867
. 527 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000231.1:1-27386
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000231.1:1-27386
. 396 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000231.1:1-27386
. 581 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 2 [total length = 258 (bp), fraction of region length = 0.009421] with fraction of all sequences found in enriched regions = 0.000023

INFO: profiling region >>> GL000216.1:1-172294
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000216.1:1-172294
. 5053 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000216.1:1-172294
. 7541 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 32 [total length = 7008 (bp), fraction of region length = 0.040675] with fraction of all sequences found in enriched regions = 0.327849

INFO: profiling region >>> GL000233.1:1-45941
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000233.1:1-45941
. 242 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000233.1:1-45941
. 365 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000214.1:1-137718
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000214.1:1-137718
. 4092 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000214.1:1-137718
. 5814 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 22 [total length = 20526 (bp), fraction of region length = 0.149044] with fraction of all sequences found in enriched regions = 0.296558

INFO: profiling region >>> GL000208.1:1-92689
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000208.1:1-92689
. 1366 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000208.1:1-92689
. 2260 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...
WARNING: ZERO enriched reagions are found ...

INFO: profiling region >>> GL000229.1:1-19913
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000229.1:1-19913
. 282 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000229.1:1-19913
. 419 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000206.1:1-41001
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000206.1:1-41001
. 5 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000206.1:1-41001
. 28 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000240.1:1-41933
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000240.1:1-41933
. 181 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000240.1:1-41933
. 269 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000246.1:1-38154
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000246.1:1-38154
. 22 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000246.1:1-38154
. 39 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000223.1:1-180455
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000223.1:1-180455
. 13 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000223.1:1-180455
. 22 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000200.1:1-187035
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000200.1:1-187035
 0 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000200.1:1-187035
 0 fragments are accepted.

INFO: profiling region >>> GL000248.1:1-39786
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000248.1:1-39786
. 15 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000248.1:1-39786
. 34 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000221.1:1-155397
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000221.1:1-155397
. 265 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000221.1:1-155397
. 406 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000242.1:1-43523
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000242.1:1-43523
. 6 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000242.1:1-43523
. 13 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000204.1:1-81310
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000204.1:1-81310
. 281 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000204.1:1-81310
. 509 fragments are accepted.
WARNING: no significant bins (FDR=0.05)...
WARNING: no significant bins (FDR=0.05)...

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000227.1:1-128374
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000227.1:1-128374
. 12 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000227.1:1-128374
. 39 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000244.1:1-39929
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000244.1:1-39929
. 20 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000244.1:1-39929
. 29 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000202.1:1-40103
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000202.1:1-40103
. 119 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000202.1:1-40103
. 205 fragments are accepted.

WARNING: no bkg locations were found for this analysis region. Skipping ...

INFO: profiling region >>> GL000225.1:1-211173
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77313/A77313.CBKY8ANXX_4.bam GL000225.1:1-211173
. 10377 fragments are accepted.
INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5762/A77316/A77316.CBKY8ANXX_4.bam GL000225.1:1-211173
. 12968 fragments are accepted.
INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp)
INFO: number of enriched regions after final processing 101 [total length = 11110 (bp), fraction of region length = 0.052611] with fraction of all sequences found in enriched regions = 0.494190
INFO: Finished OK