INFO: SVN version, compile time, version >>> $Id: FindER_1_0_0.java 127368 2017-02-15 23:46:04Z mbilenky $ v 1.0.1e #################################################################################### # # v 1.0.1e (beta), February 15, 2017 : Please report problems to: mbilenky@bcgsc.ca # #################################################################################### INFO: SVN version, compile time >>> $Id: BAMReader_1_0_0.java 125718 2016-12-06 04:23:24Z mbilenky $ INFO: analyzing bam file >>> /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: using samtools >>> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -h /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: generated chromosome length map for 84 chromosomes INFO: read length 75 bp INFO: SVN version, compile time >>> $Id: BAMReader_1_0_0.java 125718 2016-12-06 04:23:24Z mbilenky $ INFO: analyzing bam file >>> /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: using samtools >>> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -h /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: generated chromosome length map for 84 chromosomes INFO: read length 75 bp INFO: no external blacklisting. INFO: outputting enriched regions (ER) into /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/FindER.1.0.1e-A77338.CBKY8ANXX_5.v.A77341/A77338.CBKY8ANXX_5.vs.A77341.CBKY8ANXX_5.FDR_0.05 INFO: profiling region >>> GL000199.1:1-169874 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000199.1:1-169874 . 2661 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000199.1:1-169874 . 6573 fragments are accepted. INFO: generating distance distribution between fragment starts ... INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000199.1:1-169874 inferred bin size 100 (bp). [will be used to bin 'signal' and 'input'] WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000219.1:1-179198 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000219.1:1-179198 . 1676 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000219.1:1-179198 . 3411 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 80 [total length = 8080 (bp), fraction of region length = 0.045090] with fraction of all sequences found in enriched regions = 0.099503 INFO: profiling region >>> GL000217.1:1-172149 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000217.1:1-172149 . 238 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000217.1:1-172149 . 412 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000191.1:1-106433 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000191.1:1-106433 . 73 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000191.1:1-106433 . 208 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000193.1:1-189789 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000193.1:1-189789 . 2357 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000193.1:1-189789 . 2925 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000195.1:1-182896 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000195.1:1-182896 . 2745 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000195.1:1-182896 . 5438 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000197.1:1-37175 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000197.1:1-37175 0 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000197.1:1-37175 . 5 fragments are accepted. INFO: profiling region >>> GL000230.1:1-43691 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000230.1:1-43691 . 166 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000230.1:1-43691 . 259 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000236.1:1-41934 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000236.1:1-41934 . 2 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000236.1:1-41934 . 18 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000211.1:1-166566 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000211.1:1-166566 . 525 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000211.1:1-166566 . 1212 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000232.1:1-40652 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000232.1:1-40652 . 851 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000232.1:1-40652 . 1497 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000238.1:1-39939 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000238.1:1-39939 . 28 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000238.1:1-39939 . 69 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000215.1:1-172545 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000215.1:1-172545 . 34 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000215.1:1-172545 . 83 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 10:1-135534747 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam 10:1-135534747 . 455634 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 10:1-135534747 ... 1297824 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 5886 [total length = 1241946 (bp), fraction of region length = 0.009163] with fraction of all sequences found in enriched regions = 0.089019 INFO: profiling region >>> GL000234.1:1-40531 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000234.1:1-40531 . 937 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000234.1:1-40531 . 1476 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000213.1:1-164239 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000213.1:1-164239 . 74 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000213.1:1-164239 . 154 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 11:1-135006516 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam 11:1-135006516 . 434673 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 11:1-135006516 ... 1272463 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 5684 [total length = 2279284 (bp), fraction of region length = 0.016883] with fraction of all sequences found in enriched regions = 0.067303 INFO: profiling region >>> 12:1-133851895 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam 12:1-133851895 . 423256 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 12:1-133851895 ... 1228238 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 6273 [total length = 1260873 (bp), fraction of region length = 0.009420] with fraction of all sequences found in enriched regions = 0.066667 INFO: profiling region >>> GL000209.1:1-159169 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000209.1:1-159169 . 24 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000209.1:1-159169 . 109 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 13:1-115169878 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam 13:1-115169878 . 267924 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 13:1-115169878 .. 755482 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 4458 [total length = 1074378 (bp), fraction of region length = 0.009329] with fraction of all sequences found in enriched regions = 0.054352 INFO: profiling region >>> 14:1-107349540 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam 14:1-107349540 . 292013 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 14:1-107349540 .. 819363 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 4178 [total length = 881558 (bp), fraction of region length = 0.008212] with fraction of all sequences found in enriched regions = 0.063909 INFO: profiling region >>> GL000207.1:1-4262 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000207.1:1-4262 . 20 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000207.1:1-4262 . 49 fragments are accepted. WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000228.1:1-129120 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000228.1:1-129120 . 608 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000228.1:1-129120 . 864 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 15:1-102531392 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam 15:1-102531392 . 289162 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 15:1-102531392 .. 803737 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 3857 [total length = 1970927 (bp), fraction of region length = 0.019223] with fraction of all sequences found in enriched regions = 0.067633 INFO: profiling region >>> 16:1-90354753 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam 16:1-90354753 . 324195 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 16:1-90354753 .. 898360 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 4341 [total length = 742311 (bp), fraction of region length = 0.008216] with fraction of all sequences found in enriched regions = 0.090052 INFO: profiling region >>> 17:1-81195210 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam 17:1-81195210 . 347425 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 17:1-81195210 .. 954270 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 4532 [total length = 910932 (bp), fraction of region length = 0.011219] with fraction of all sequences found in enriched regions = 0.086660 INFO: profiling region >>> 18:1-78077248 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam 18:1-78077248 . 220086 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 18:1-78077248 .. 643495 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 4048 [total length = 935088 (bp), fraction of region length = 0.011976] with fraction of all sequences found in enriched regions = 0.066133 INFO: profiling region >>> MT:1-16569 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam MT:1-16569 . 166 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam MT:1-16569 . 170 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 19:1-59128983 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam 19:1-59128983 . 345993 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 19:1-59128983 .. 757255 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 3443 [total length = 588753 (bp), fraction of region length = 0.009957] with fraction of all sequences found in enriched regions = 0.074474 INFO: profiling region >>> 1:1-249250621 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam 1:1-249250621 .. 781292 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 1:1-249250621 ..... 2260353 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 10668 [total length = 2891028 (bp), fraction of region length = 0.011599] with fraction of all sequences found in enriched regions = 0.076774 INFO: profiling region >>> 2:1-243199373 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam 2:1-243199373 .. 715873 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 2:1-243199373 ..... 2130837 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 11176 [total length = 2246376 (bp), fraction of region length = 0.009237] with fraction of all sequences found in enriched regions = 0.068353 INFO: profiling region >>> 3:1-198022430 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam 3:1-198022430 .. 548004 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 3:1-198022430 .... 1697133 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 7958 [total length = 3429898 (bp), fraction of region length = 0.017321] with fraction of all sequences found in enriched regions = 0.053458 INFO: profiling region >>> GL000241.1:1-42152 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000241.1:1-42152 . 639 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000241.1:1-42152 . 1197 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> 4:1-191154276 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam 4:1-191154276 .. 500806 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 4:1-191154276 ... 1461532 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 9985 [total length = 4003985 (bp), fraction of region length = 0.020946] with fraction of all sequences found in enriched regions = 0.078909 INFO: profiling region >>> 5:1-180915260 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam 5:1-180915260 .. 506768 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 5:1-180915260 .... 1492560 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 8434 [total length = 1695234 (bp), fraction of region length = 0.009370] with fraction of all sequences found in enriched regions = 0.060254 INFO: profiling region >>> 6:1-171115067 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam 6:1-171115067 . 497162 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 6:1-171115067 ... 1469702 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 7641 [total length = 1535841 (bp), fraction of region length = 0.008975] with fraction of all sequences found in enriched regions = 0.067067 INFO: profiling region >>> 7:1-159138663 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam 7:1-159138663 . 496926 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 7:1-159138663 ... 1399182 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 7410 [total length = 1711710 (bp), fraction of region length = 0.010756] with fraction of all sequences found in enriched regions = 0.069081 INFO: profiling region >>> 8:1-146364022 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam 8:1-146364022 . 420885 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 8:1-146364022 ... 1242886 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 7022 [total length = 4220222 (bp), fraction of region length = 0.028834] with fraction of all sequences found in enriched regions = 0.061120 INFO: profiling region >>> 9:1-141213431 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam 9:1-141213431 . 383677 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 9:1-141213431 ... 1071260 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 5277 [total length = 1430067 (bp), fraction of region length = 0.010127] with fraction of all sequences found in enriched regions = 0.068860 INFO: profiling region >>> GL000201.1:1-36148 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000201.1:1-36148 . 11 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000201.1:1-36148 . 35 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000247.1:1-36422 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000247.1:1-36422 . 95 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000247.1:1-36422 . 155 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000222.1:1-186861 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000222.1:1-186861 . 264 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000222.1:1-186861 . 501 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000249.1:1-38502 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000249.1:1-38502 . 1 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000249.1:1-38502 . 4 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000220.1:1-161802 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000220.1:1-161802 . 69060 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000220.1:1-161802 . 55362 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000226.1:1-15008 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000226.1:1-15008 . 712 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000226.1:1-15008 . 1372 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000243.1:1-43341 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000243.1:1-43341 . 104 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000243.1:1-43341 . 157 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000205.1:1-174588 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000205.1:1-174588 . 2662 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000205.1:1-174588 . 4710 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> 20:1-63025520 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam 20:1-63025520 . 240282 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 20:1-63025520 .. 674428 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 2827 [total length = 681307 (bp), fraction of region length = 0.010810] with fraction of all sequences found in enriched regions = 0.062034 INFO: profiling region >>> 21:1-48129895 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam 21:1-48129895 . 132933 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 21:1-48129895 . 342535 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 1760 [total length = 476960 (bp), fraction of region length = 0.009910] with fraction of all sequences found in enriched regions = 0.084419 INFO: profiling region >>> GL000245.1:1-36651 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000245.1:1-36651 . 13 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000245.1:1-36651 . 32 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000203.1:1-37498 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000203.1:1-37498 . 48 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000203.1:1-37498 . 93 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000224.1:1-179693 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000224.1:1-179693 . 3221 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000224.1:1-179693 . 5335 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 56 [total length = 12936 (bp), fraction of region length = 0.071989] with fraction of all sequences found in enriched regions = 0.337608 INFO: profiling region >>> 22:1-51304566 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam 22:1-51304566 . 158810 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 22:1-51304566 . 459559 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 1811 [total length = 382121 (bp), fraction of region length = 0.007448] with fraction of all sequences found in enriched regions = 0.071431 INFO: profiling region >>> GL000198.1:1-90085 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000198.1:1-90085 . 746 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000198.1:1-90085 . 1532 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000218.1:1-161147 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000218.1:1-161147 . 1313 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000218.1:1-161147 . 1748 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000239.1:1-33824 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000239.1:1-33824 . 54 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000239.1:1-33824 . 86 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000192.1:1-547496 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000192.1:1-547496 . 778 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000192.1:1-547496 . 2380 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000194.1:1-191469 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000194.1:1-191469 . 1592 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000194.1:1-191469 . 2281 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000196.1:1-38914 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000196.1:1-38914 . 8 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000196.1:1-38914 . 17 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> X:1-155270560 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam X:1-155270560 . 208509 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam X:1-155270560 .. 623484 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000235.1:1-34474 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000235.1:1-34474 . 361 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000235.1:1-34474 . 570 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000212.1:1-186858 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000212.1:1-186858 . 2089 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000212.1:1-186858 . 2557 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> Y:1-59373566 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam Y:1-59373566 . 36922 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam Y:1-59373566 . 82433 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000210.1:1-27682 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000210.1:1-27682 . 12 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000210.1:1-27682 . 40 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000237.1:1-45867 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000237.1:1-45867 . 784 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000237.1:1-45867 . 950 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000231.1:1-27386 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000231.1:1-27386 . 499 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000231.1:1-27386 . 727 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000216.1:1-172294 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000216.1:1-172294 . 5260 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000216.1:1-172294 . 7334 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000233.1:1-45941 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000233.1:1-45941 . 169 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000233.1:1-45941 . 279 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000214.1:1-137718 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000214.1:1-137718 . 3957 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000214.1:1-137718 . 6201 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 21 [total length = 16191 (bp), fraction of region length = 0.117566] with fraction of all sequences found in enriched regions = 0.316123 INFO: profiling region >>> GL000208.1:1-92689 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000208.1:1-92689 . 837 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000208.1:1-92689 . 2487 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000229.1:1-19913 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000229.1:1-19913 . 523 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000229.1:1-19913 . 551 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000206.1:1-41001 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000206.1:1-41001 . 15 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000206.1:1-41001 . 48 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000240.1:1-41933 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000240.1:1-41933 . 233 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000240.1:1-41933 . 372 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000246.1:1-38154 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000246.1:1-38154 . 20 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000246.1:1-38154 . 68 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000223.1:1-180455 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000223.1:1-180455 . 26 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000223.1:1-180455 . 27 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000200.1:1-187035 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000200.1:1-187035 0 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000200.1:1-187035 0 fragments are accepted. INFO: profiling region >>> GL000248.1:1-39786 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000248.1:1-39786 . 8 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000248.1:1-39786 . 28 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000221.1:1-155397 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000221.1:1-155397 . 247 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000221.1:1-155397 . 479 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000242.1:1-43523 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000242.1:1-43523 . 14 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000242.1:1-43523 . 44 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000204.1:1-81310 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000204.1:1-81310 . 357 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000204.1:1-81310 . 777 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000227.1:1-128374 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000227.1:1-128374 . 31 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000227.1:1-128374 . 82 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000244.1:1-39929 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000244.1:1-39929 . 18 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000244.1:1-39929 . 10 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000202.1:1-40103 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000202.1:1-40103 . 107 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000202.1:1-40103 . 335 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000225.1:1-211173 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77338/A77338.CBKY8ANXX_5.bam GL000225.1:1-211173 . 12037 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000225.1:1-211173 . 14452 fragments are accepted. WARNING: no significant bins (FDR=0.05)... INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 73 [total length = 17593 (bp), fraction of region length = 0.083311] with fraction of all sequences found in enriched regions = 0.340366 INFO: Finished OK