INFO: SVN version, compile time, version >>> $Id: FindER_1_0_0.java 127368 2017-02-15 23:46:04Z mbilenky $ v 1.0.1e #################################################################################### # # v 1.0.1e (beta), February 15, 2017 : Please report problems to: mbilenky@bcgsc.ca # #################################################################################### INFO: SVN version, compile time >>> $Id: BAMReader_1_0_0.java 125718 2016-12-06 04:23:24Z mbilenky $ INFO: analyzing bam file >>> /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: using samtools >>> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -h /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: generated chromosome length map for 84 chromosomes INFO: read length 75 bp INFO: SVN version, compile time >>> $Id: BAMReader_1_0_0.java 125718 2016-12-06 04:23:24Z mbilenky $ INFO: analyzing bam file >>> /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: using samtools >>> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -h /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: generated chromosome length map for 84 chromosomes INFO: read length 75 bp INFO: no external blacklisting. INFO: outputting enriched regions (ER) into /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/FindER.1.0.1e-A77339.CBKY8ANXX_5.v.A77341/A77339.CBKY8ANXX_5.vs.A77341.CBKY8ANXX_5.FDR_0.05 INFO: profiling region >>> GL000199.1:1-169874 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000199.1:1-169874 . 3586 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000199.1:1-169874 . 6573 fragments are accepted. INFO: generating distance distribution between fragment starts ... INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000199.1:1-169874 inferred bin size 86 (bp). [will be used to bin 'signal' and 'input'] WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000219.1:1-179198 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000219.1:1-179198 . 3380 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000219.1:1-179198 . 3411 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000217.1:1-172149 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000217.1:1-172149 . 250 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000217.1:1-172149 . 412 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000191.1:1-106433 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000191.1:1-106433 . 145 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000191.1:1-106433 . 208 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000193.1:1-189789 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000193.1:1-189789 . 1839 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000193.1:1-189789 . 2925 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000195.1:1-182896 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000195.1:1-182896 . 6700 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000195.1:1-182896 . 5438 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 5 [total length = 435 (bp), fraction of region length = 0.002378] with fraction of all sequences found in enriched regions = 0.040184 INFO: profiling region >>> GL000197.1:1-37175 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000197.1:1-37175 . 9 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000197.1:1-37175 . 5 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000230.1:1-43691 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000230.1:1-43691 . 205 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000230.1:1-43691 . 259 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000236.1:1-41934 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000236.1:1-41934 . 10 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000236.1:1-41934 . 18 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000211.1:1-166566 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000211.1:1-166566 . 774 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000211.1:1-166566 . 1212 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000232.1:1-40652 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000232.1:1-40652 . 900 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000232.1:1-40652 . 1497 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000238.1:1-39939 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000238.1:1-39939 . 85 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000238.1:1-39939 . 69 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000215.1:1-172545 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000215.1:1-172545 . 29 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000215.1:1-172545 . 83 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 10:1-135534747 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam 10:1-135534747 ... 1095581 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 10:1-135534747 ... 1297824 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 7025 [total length = 1636825 (bp), fraction of region length = 0.012077] with fraction of all sequences found in enriched regions = 0.124887 INFO: profiling region >>> GL000234.1:1-40531 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000234.1:1-40531 . 868 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000234.1:1-40531 . 1476 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000213.1:1-164239 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000213.1:1-164239 . 71 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000213.1:1-164239 . 154 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 11:1-135006516 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam 11:1-135006516 ... 1096111 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 11:1-135006516 ... 1272463 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 7691 [total length = 1561273 (bp), fraction of region length = 0.011564] with fraction of all sequences found in enriched regions = 0.118114 INFO: profiling region >>> 12:1-133851895 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam 12:1-133851895 .. 991097 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 12:1-133851895 ... 1228238 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 7011 [total length = 1212903 (bp), fraction of region length = 0.009062] with fraction of all sequences found in enriched regions = 0.117404 INFO: profiling region >>> GL000209.1:1-159169 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000209.1:1-159169 . 79 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000209.1:1-159169 . 109 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 13:1-115169878 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam 13:1-115169878 .. 587953 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 13:1-115169878 .. 755482 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 4945 [total length = 1003835 (bp), fraction of region length = 0.008716] with fraction of all sequences found in enriched regions = 0.110103 INFO: profiling region >>> 14:1-107349540 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam 14:1-107349540 .. 683754 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 14:1-107349540 .. 819363 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 4676 [total length = 949228 (bp), fraction of region length = 0.008842] with fraction of all sequences found in enriched regions = 0.112317 INFO: profiling region >>> GL000207.1:1-4262 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000207.1:1-4262 . 34 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000207.1:1-4262 . 49 fragments are accepted. WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000228.1:1-129120 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000228.1:1-129120 . 671 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000228.1:1-129120 . 864 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 15:1-102531392 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam 15:1-102531392 .. 719697 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 15:1-102531392 .. 803737 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 4426 [total length = 1279114 (bp), fraction of region length = 0.012475] with fraction of all sequences found in enriched regions = 0.110963 INFO: profiling region >>> 16:1-90354753 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam 16:1-90354753 .. 696609 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 16:1-90354753 .. 898360 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 5300 [total length = 916900 (bp), fraction of region length = 0.010148] with fraction of all sequences found in enriched regions = 0.139539 INFO: profiling region >>> 17:1-81195210 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam 17:1-81195210 .. 822392 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 17:1-81195210 .. 954270 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 6367 [total length = 910481 (bp), fraction of region length = 0.011213] with fraction of all sequences found in enriched regions = 0.180384 INFO: profiling region >>> 18:1-78077248 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam 18:1-78077248 .. 534602 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 18:1-78077248 .. 643495 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 3328 [total length = 575744 (bp), fraction of region length = 0.007374] with fraction of all sequences found in enriched regions = 0.088723 INFO: profiling region >>> MT:1-16569 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam MT:1-16569 . 50 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam MT:1-16569 . 170 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 19:1-59128983 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam 19:1-59128983 .. 658791 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 19:1-59128983 .. 757255 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 3971 [total length = 567853 (bp), fraction of region length = 0.009604] with fraction of all sequences found in enriched regions = 0.176575 INFO: profiling region >>> 1:1-249250621 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam 1:1-249250621 .... 1931762 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 1:1-249250621 ..... 2260353 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 13592 [total length = 2351416 (bp), fraction of region length = 0.009434] with fraction of all sequences found in enriched regions = 0.141738 INFO: profiling region >>> 2:1-243199373 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam 2:1-243199373 .... 1692793 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 2:1-243199373 ..... 2130837 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 11430 [total length = 3257550 (bp), fraction of region length = 0.013395] with fraction of all sequences found in enriched regions = 0.109803 INFO: profiling region >>> 3:1-198022430 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam 3:1-198022430 ... 1214113 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 3:1-198022430 .... 1697133 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 9753 [total length = 3618363 (bp), fraction of region length = 0.018272] with fraction of all sequences found in enriched regions = 0.090481 INFO: profiling region >>> GL000241.1:1-42152 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000241.1:1-42152 . 719 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000241.1:1-42152 . 1197 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> 4:1-191154276 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam 4:1-191154276 ... 1110067 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 4:1-191154276 ... 1461532 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 8314 [total length = 2153326 (bp), fraction of region length = 0.011265] with fraction of all sequences found in enriched regions = 0.098061 INFO: profiling region >>> 5:1-180915260 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam 5:1-180915260 ... 1202651 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 5:1-180915260 .... 1492560 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 8941 [total length = 1815023 (bp), fraction of region length = 0.010032] with fraction of all sequences found in enriched regions = 0.112681 INFO: profiling region >>> 6:1-171115067 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam 6:1-171115067 ... 1188990 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 6:1-171115067 ... 1469702 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 8676 [total length = 1240668 (bp), fraction of region length = 0.007250] with fraction of all sequences found in enriched regions = 0.119875 INFO: profiling region >>> 7:1-159138663 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam 7:1-159138663 ... 1098322 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 7:1-159138663 ... 1399182 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 7538 [total length = 1304074 (bp), fraction of region length = 0.008195] with fraction of all sequences found in enriched regions = 0.113826 INFO: profiling region >>> 8:1-146364022 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam 8:1-146364022 ... 1031276 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 8:1-146364022 ... 1242886 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 7397 [total length = 1472003 (bp), fraction of region length = 0.010057] with fraction of all sequences found in enriched regions = 0.104525 INFO: profiling region >>> 9:1-141213431 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam 9:1-141213431 .. 931162 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 9:1-141213431 ... 1071260 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 6569 [total length = 1333507 (bp), fraction of region length = 0.009443] with fraction of all sequences found in enriched regions = 0.119047 INFO: profiling region >>> GL000201.1:1-36148 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000201.1:1-36148 . 42 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000201.1:1-36148 . 35 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000247.1:1-36422 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000247.1:1-36422 . 92 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000247.1:1-36422 . 155 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000222.1:1-186861 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000222.1:1-186861 . 450 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000222.1:1-186861 . 501 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000249.1:1-38502 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000249.1:1-38502 . 2 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000249.1:1-38502 . 4 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000220.1:1-161802 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000220.1:1-161802 . 84548 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000220.1:1-161802 . 55362 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000226.1:1-15008 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000226.1:1-15008 . 1001 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000226.1:1-15008 . 1372 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000243.1:1-43341 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000243.1:1-43341 . 91 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000243.1:1-43341 . 157 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000205.1:1-174588 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000205.1:1-174588 . 4889 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000205.1:1-174588 . 4710 fragments are accepted. WARNING: no significant bins (FDR=0.05)... INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 8 [total length = 1144 (bp), fraction of region length = 0.006553] with fraction of all sequences found in enriched regions = 0.053914 INFO: profiling region >>> 20:1-63025520 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam 20:1-63025520 .. 638109 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 20:1-63025520 .. 674428 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 3673 [total length = 2420507 (bp), fraction of region length = 0.038405] with fraction of all sequences found in enriched regions = 0.119568 INFO: profiling region >>> 21:1-48129895 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam 21:1-48129895 . 256241 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 21:1-48129895 . 342535 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 2274 [total length = 520746 (bp), fraction of region length = 0.010820] with fraction of all sequences found in enriched regions = 0.114742 INFO: profiling region >>> GL000245.1:1-36651 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000245.1:1-36651 . 24 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000245.1:1-36651 . 32 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000203.1:1-37498 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000203.1:1-37498 . 54 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000203.1:1-37498 . 93 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000224.1:1-179693 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000224.1:1-179693 . 4052 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000224.1:1-179693 . 5335 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 14 [total length = 1218 (bp), fraction of region length = 0.006778] with fraction of all sequences found in enriched regions = 0.212437 INFO: profiling region >>> 22:1-51304566 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam 22:1-51304566 . 375398 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam 22:1-51304566 . 459559 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 2316 [total length = 530364 (bp), fraction of region length = 0.010338] with fraction of all sequences found in enriched regions = 0.133741 INFO: profiling region >>> GL000198.1:1-90085 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000198.1:1-90085 . 873 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000198.1:1-90085 . 1532 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 6 [total length = 2766 (bp), fraction of region length = 0.030704] with fraction of all sequences found in enriched regions = 0.000001 INFO: profiling region >>> GL000218.1:1-161147 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000218.1:1-161147 . 1274 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000218.1:1-161147 . 1748 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000239.1:1-33824 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000239.1:1-33824 . 32 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000239.1:1-33824 . 86 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000192.1:1-547496 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000192.1:1-547496 . 3125 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000192.1:1-547496 . 2380 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000194.1:1-191469 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000194.1:1-191469 . 1577 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000194.1:1-191469 . 2281 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000196.1:1-38914 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000196.1:1-38914 . 7 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000196.1:1-38914 . 17 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> X:1-155270560 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam X:1-155270560 . 437343 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam X:1-155270560 .. 623484 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000235.1:1-34474 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000235.1:1-34474 . 360 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000235.1:1-34474 . 570 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000212.1:1-186858 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000212.1:1-186858 . 1441 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000212.1:1-186858 . 2557 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> Y:1-59373566 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam Y:1-59373566 . 52403 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam Y:1-59373566 . 82433 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000210.1:1-27682 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000210.1:1-27682 . 39 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000210.1:1-27682 . 40 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000237.1:1-45867 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000237.1:1-45867 . 526 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000237.1:1-45867 . 950 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000231.1:1-27386 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000231.1:1-27386 . 661 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000231.1:1-27386 . 727 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000216.1:1-172294 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000216.1:1-172294 . 4966 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000216.1:1-172294 . 7334 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000233.1:1-45941 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000233.1:1-45941 . 175 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000233.1:1-45941 . 279 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000214.1:1-137718 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000214.1:1-137718 . 4569 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000214.1:1-137718 . 6201 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 14 [total length = 8442 (bp), fraction of region length = 0.061299] with fraction of all sequences found in enriched regions = 0.287108 INFO: profiling region >>> GL000208.1:1-92689 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000208.1:1-92689 . 1327 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000208.1:1-92689 . 2487 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000229.1:1-19913 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000229.1:1-19913 . 363 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000229.1:1-19913 . 551 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000206.1:1-41001 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000206.1:1-41001 . 24 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000206.1:1-41001 . 48 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000240.1:1-41933 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000240.1:1-41933 . 211 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000240.1:1-41933 . 372 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000246.1:1-38154 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000246.1:1-38154 . 64 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000246.1:1-38154 . 68 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000223.1:1-180455 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000223.1:1-180455 . 24 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000223.1:1-180455 . 27 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000200.1:1-187035 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000200.1:1-187035 0 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000200.1:1-187035 0 fragments are accepted. INFO: profiling region >>> GL000248.1:1-39786 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000248.1:1-39786 . 40 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000248.1:1-39786 . 28 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000221.1:1-155397 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000221.1:1-155397 . 279 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000221.1:1-155397 . 479 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000242.1:1-43523 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000242.1:1-43523 . 37 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000242.1:1-43523 . 44 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000204.1:1-81310 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000204.1:1-81310 . 1402 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000204.1:1-81310 . 777 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000227.1:1-128374 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000227.1:1-128374 . 122 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000227.1:1-128374 . 82 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000244.1:1-39929 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000244.1:1-39929 . 10 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000244.1:1-39929 . 10 fragments are accepted. WARNING: no bkg locations were found for this analysis region. Skipping ... INFO: profiling region >>> GL000202.1:1-40103 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000202.1:1-40103 . 508 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000202.1:1-40103 . 335 fragments are accepted. WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: no significant bins (FDR=0.05)... WARNING: ZERO enriched reagions are found ... INFO: profiling region >>> GL000225.1:1-211173 INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77339/A77339.CBKY8ANXX_5.bam GL000225.1:1-211173 . 10391 fragments are accepted. INFO: generating coverage profile for /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam INFO: running command >> /home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -f 0 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5763/A77341/A77341.CBKY8ANXX_5.bam GL000225.1:1-211173 . 14452 fragments are accepted. INFO: merging enriched regions if gap size < 125(bp), and discarding enriched regions with size < 175(bp) INFO: number of enriched regions after final processing 9 [total length = 3375 (bp), fraction of region length = 0.015982] with fraction of all sequences found in enriched regions = 0.125445 INFO: Finished OK