**** v. 0.9.8
$Id: BAM2WIG.java 120350 2016-06-04 01:27:29Z mbilenky $
Reading BAM file: /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77362/A77362.CBTEAANXX_2.bam
Output WIG file into: /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77362/wig
Reading the header...
/home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -H -q 5 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77362/A77362.CBTEAANXX_2.bam
Read lengths for 84 chromosomes
ChIP-seq, PET, min allowed fragment length=75, max allowed fragment length=1000
Start analysis...

Parsing /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77362/A77362.CBTEAANXX_2.bam
PETs with length smaller the 75bp and greater than 1000bp will be discarded
/home/pubseq/BioSw/samtools/samtools-0.1.16/samtools view -X -q 5 -F 1028 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77362/A77362.CBTEAANXX_2.bam
..................
Reads: total=17312618