#__build__:hg19
#__jars__:/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/jars
#__samtools__:/projects/edcc_new/reference_epigenomes/housekeeping/samtools/1.3.1/bin
#__bedtools__:/projects/edcc_new/reference_epigenomes/housekeeping/bin/bedtools-2.26/bedtools2-2.26.0/bin
hg19 /projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources
#__using__:CHR_BWA2UCSC_NAMES=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19.bwa2ucsc.names
#__using__:CHROM_SIZES=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19.chrom.sizes
#__using__:TSS=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/ensembl_TSS.uniq.sorted.bed.uniq
#__using__:GENEBODIES=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/ensembl_genenames.uniq.sorted.bed
#__using__:ZNF=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/ensembl_Znf.uniq.sorted.bed
#__using__:HOX=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/HOX_clusters.sorted.bed
#__using__:ENHANCERS=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/encode_ChromHMM_enhancer_state_7.sorted.merged.bed
#config hg19 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam  Mon.Oct.30.13.56.45.PDT.2017-bioqc01
/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam __mode__:1  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam
#samtools:/projects/edcc_new/reference_epigenomes/housekeeping/samtools/1.3.1/bin Mon.Oct.30.13.56.45.PDT.2017-bioqc01
return:0 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam.dedupstats
return:0 flagstats /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam
#__alreadyIndexed__:/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam.bai
return:0 idxstats /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam
return:0 [md5] /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam
#return:0 indexing /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam
#__NO_WWW_SET_TRACKS_NOT_PUBLISHED:/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/wig/A77251.CBTEAANXX_2.q5.F1028.PET.wig.bw
{"wig-ok":0, "bam":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam", "prefix":"A77251.CBTEAANXX_2", "log":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/wig/A77251.CBTEAANXX_2.PET.q5.F1028.PET.wig.gz.log", "wig-cmd":"/gsc/software/linux-x86_64/jre1.8.0_66/bin/java -jar -Xmx10G /projects/tab/dev/code/thirdParty/ChIPProductionPipeline/jars/BAM2WIG.jar -bamFile /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam -F 1028 -q 5 -cp -n A77251.CBTEAANXX_2 -chr /projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19.bwa2ucsc.names -out /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/wig", "outdir":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/wig", "wig":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/wig/A77251.CBTEAANXX_2.q5.F1028.PET.wig.gz", "bw-ok":0, "bw":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/wig/A77251.CBTEAANXX_2.q5.F1028.PET.wig.bw", "bw-cmd":"/projects/edcc_new/reference_epigenomes/housekeeping/EDCCProd/Utils/ucsc/binaries/wigToBigWig /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/wig/A77251.CBTEAANXX_2.q5.F1028.PET.wig.gz /projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19.chrom.sizes /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/wig/A77251.CBTEAANXX_2.q5.F1028.PET.wig.bw"}
return:0:0 BigWig/Wig
__NO_PEAKCALLING_OR_DOMAIN_STATISTICS_COMPUTED__:/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam
#config:ok hg19 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam  Mon.Oct.30.14.24.46.PDT.2017-bioqc01
#BATCH:0 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77251/A77251.CBTEAANXX_2.bam...finished Mon.Oct.30.14.24.46.PDT.2017
#__build__:hg19
#__jars__:/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/jars
#__samtools__:/projects/edcc_new/reference_epigenomes/housekeeping/samtools/1.3.1/bin
#__bedtools__:/projects/edcc_new/reference_epigenomes/housekeeping/bin/bedtools-2.26/bedtools2-2.26.0/bin
hg19 /projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources
#__using__:CHR_BWA2UCSC_NAMES=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19.bwa2ucsc.names
#__using__:CHROM_SIZES=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19.chrom.sizes
#__using__:TSS=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/ensembl_TSS.uniq.sorted.bed.uniq
#__using__:GENEBODIES=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/ensembl_genenames.uniq.sorted.bed
#__using__:ZNF=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/ensembl_Znf.uniq.sorted.bed
#__using__:HOX=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/HOX_clusters.sorted.bed
#__using__:ENHANCERS=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/encode_ChromHMM_enhancer_state_7.sorted.merged.bed
#config hg19 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77361/A77361.CBTEAANXX_2.bam  Mon.Oct.30.14.24.46.PDT.2017-bioqc01
/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77361/A77361.CBTEAANXX_2.bam __mode__:1  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77361/A77361.CBTEAANXX_2.bam
#samtools:/projects/edcc_new/reference_epigenomes/housekeeping/samtools/1.3.1/bin Mon.Oct.30.14.24.46.PDT.2017-bioqc01
return:0 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77361/A77361.CBTEAANXX_2.bam.dedupstats
return:0 flagstats /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77361/A77361.CBTEAANXX_2.bam
#__alreadyIndexed__:/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77361/A77361.CBTEAANXX_2.bam.bai
return:0 idxstats /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77361/A77361.CBTEAANXX_2.bam
return:0 [md5] /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77361/A77361.CBTEAANXX_2.bam
#return:0 indexing /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77361/A77361.CBTEAANXX_2.bam
#__NO_WWW_SET_TRACKS_NOT_PUBLISHED:/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77361/wig/A77361.CBTEAANXX_2.q5.F1028.PET.wig.bw
{"wig-ok":0, "bam":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77361/A77361.CBTEAANXX_2.bam", "prefix":"A77361.CBTEAANXX_2", "log":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77361/wig/A77361.CBTEAANXX_2.PET.q5.F1028.PET.wig.gz.log", "wig-cmd":"/gsc/software/linux-x86_64/jre1.8.0_66/bin/java -jar -Xmx10G /projects/tab/dev/code/thirdParty/ChIPProductionPipeline/jars/BAM2WIG.jar -bamFile /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77361/A77361.CBTEAANXX_2.bam -F 1028 -q 5 -cp -n A77361.CBTEAANXX_2 -chr /projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19.bwa2ucsc.names -out /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77361/wig", "outdir":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77361/wig", "wig":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77361/wig/A77361.CBTEAANXX_2.q5.F1028.PET.wig.gz", "bw-ok":0, "bw":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77361/wig/A77361.CBTEAANXX_2.q5.F1028.PET.wig.bw", "bw-cmd":"/projects/edcc_new/reference_epigenomes/housekeeping/EDCCProd/Utils/ucsc/binaries/wigToBigWig /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77361/wig/A77361.CBTEAANXX_2.q5.F1028.PET.wig.gz /projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19.chrom.sizes /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77361/wig/A77361.CBTEAANXX_2.q5.F1028.PET.wig.bw"}
return:0:0 BigWig/Wig
__NO_PEAKCALLING_OR_DOMAIN_STATISTICS_COMPUTED__:/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77361/A77361.CBTEAANXX_2.bam
#config:ok hg19 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77361/A77361.CBTEAANXX_2.bam  Mon.Oct.30.14.49.32.PDT.2017-bioqc01
#BATCH:0 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77361/A77361.CBTEAANXX_2.bam...finished Mon.Oct.30.14.49.32.PDT.2017
#__build__:hg19
#__jars__:/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/jars
#__samtools__:/projects/edcc_new/reference_epigenomes/housekeeping/samtools/1.3.1/bin
#__bedtools__:/projects/edcc_new/reference_epigenomes/housekeeping/bin/bedtools-2.26/bedtools2-2.26.0/bin
hg19 /projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources
#__using__:CHR_BWA2UCSC_NAMES=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19.bwa2ucsc.names
#__using__:CHROM_SIZES=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19.chrom.sizes
#__using__:TSS=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/ensembl_TSS.uniq.sorted.bed.uniq
#__using__:GENEBODIES=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/ensembl_genenames.uniq.sorted.bed
#__using__:ZNF=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/ensembl_Znf.uniq.sorted.bed
#__using__:HOX=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/HOX_clusters.sorted.bed
#__using__:ENHANCERS=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/encode_ChromHMM_enhancer_state_7.sorted.merged.bed
#config hg19 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77366/A77366.CBTEAANXX_2.bam  Mon.Oct.30.14.49.32.PDT.2017-bioqc01
/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77366/A77366.CBTEAANXX_2.bam __mode__:1  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77366/A77366.CBTEAANXX_2.bam
#samtools:/projects/edcc_new/reference_epigenomes/housekeeping/samtools/1.3.1/bin Mon.Oct.30.14.49.32.PDT.2017-bioqc01
return:0 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77366/A77366.CBTEAANXX_2.bam.dedupstats
return:0 flagstats /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77366/A77366.CBTEAANXX_2.bam
#__alreadyIndexed__:/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77366/A77366.CBTEAANXX_2.bam.bai
return:0 idxstats /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77366/A77366.CBTEAANXX_2.bam
return:0 [md5] /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77366/A77366.CBTEAANXX_2.bam
#return:0 indexing /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77366/A77366.CBTEAANXX_2.bam
#__NO_WWW_SET_TRACKS_NOT_PUBLISHED:/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77366/wig/A77366.CBTEAANXX_2.q5.F1028.PET.wig.bw
{"wig-ok":0, "bam":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77366/A77366.CBTEAANXX_2.bam", "prefix":"A77366.CBTEAANXX_2", "log":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77366/wig/A77366.CBTEAANXX_2.PET.q5.F1028.PET.wig.gz.log", "wig-cmd":"/gsc/software/linux-x86_64/jre1.8.0_66/bin/java -jar -Xmx10G /projects/tab/dev/code/thirdParty/ChIPProductionPipeline/jars/BAM2WIG.jar -bamFile /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77366/A77366.CBTEAANXX_2.bam -F 1028 -q 5 -cp -n A77366.CBTEAANXX_2 -chr /projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19.bwa2ucsc.names -out /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77366/wig", "outdir":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77366/wig", "wig":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77366/wig/A77366.CBTEAANXX_2.q5.F1028.PET.wig.gz", "bw-ok":0, "bw":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77366/wig/A77366.CBTEAANXX_2.q5.F1028.PET.wig.bw", "bw-cmd":"/projects/edcc_new/reference_epigenomes/housekeeping/EDCCProd/Utils/ucsc/binaries/wigToBigWig /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77366/wig/A77366.CBTEAANXX_2.q5.F1028.PET.wig.gz /projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19.chrom.sizes /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77366/wig/A77366.CBTEAANXX_2.q5.F1028.PET.wig.bw"}
return:0:0 BigWig/Wig
__NO_PEAKCALLING_OR_DOMAIN_STATISTICS_COMPUTED__:/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77366/A77366.CBTEAANXX_2.bam
#config:ok hg19 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77366/A77366.CBTEAANXX_2.bam  Mon.Oct.30.15.11.48.PDT.2017-bioqc01
#BATCH:0 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77366/A77366.CBTEAANXX_2.bam...finished Mon.Oct.30.15.11.48.PDT.2017
#__build__:hg19
#__jars__:/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/jars
#__samtools__:/projects/edcc_new/reference_epigenomes/housekeeping/samtools/1.3.1/bin
#__bedtools__:/projects/edcc_new/reference_epigenomes/housekeeping/bin/bedtools-2.26/bedtools2-2.26.0/bin
hg19 /projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources
#__using__:CHR_BWA2UCSC_NAMES=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19.bwa2ucsc.names
#__using__:CHROM_SIZES=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19.chrom.sizes
#__using__:TSS=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/ensembl_TSS.uniq.sorted.bed.uniq
#__using__:GENEBODIES=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/ensembl_genenames.uniq.sorted.bed
#__using__:ZNF=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/ensembl_Znf.uniq.sorted.bed
#__using__:HOX=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/HOX_clusters.sorted.bed
#__using__:ENHANCERS=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/encode_ChromHMM_enhancer_state_7.sorted.merged.bed
#config hg19 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam  Mon.Oct.30.15.11.48.PDT.2017-bioqc01
/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam __mode__:1  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam
#samtools:/projects/edcc_new/reference_epigenomes/housekeeping/samtools/1.3.1/bin Mon.Oct.30.15.11.48.PDT.2017-bioqc01
return:0 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam.dedupstats
return:0 flagstats /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam
#__alreadyIndexed__:/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam.bai
return:0 idxstats /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam
return:0 [md5] /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam
#return:0 indexing /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam
#__NO_WWW_SET_TRACKS_NOT_PUBLISHED:/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/wig/A77371.CBTEAANXX_2.q5.F1028.PET.wig.bw
{"wig-ok":0, "bam":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam", "prefix":"A77371.CBTEAANXX_2", "log":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/wig/A77371.CBTEAANXX_2.PET.q5.F1028.PET.wig.gz.log", "wig-cmd":"/gsc/software/linux-x86_64/jre1.8.0_66/bin/java -jar -Xmx10G /projects/tab/dev/code/thirdParty/ChIPProductionPipeline/jars/BAM2WIG.jar -bamFile /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam -F 1028 -q 5 -cp -n A77371.CBTEAANXX_2 -chr /projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19.bwa2ucsc.names -out /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/wig", "outdir":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/wig", "wig":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/wig/A77371.CBTEAANXX_2.q5.F1028.PET.wig.gz", "bw-ok":0, "bw":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/wig/A77371.CBTEAANXX_2.q5.F1028.PET.wig.bw", "bw-cmd":"/projects/edcc_new/reference_epigenomes/housekeeping/EDCCProd/Utils/ucsc/binaries/wigToBigWig /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/wig/A77371.CBTEAANXX_2.q5.F1028.PET.wig.gz /projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19.chrom.sizes /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/wig/A77371.CBTEAANXX_2.q5.F1028.PET.wig.bw"}
return:0:0 BigWig/Wig
__NO_PEAKCALLING_OR_DOMAIN_STATISTICS_COMPUTED__:/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam
#config:ok hg19 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam  Mon.Oct.30.15.33.06.PDT.2017-bioqc01
#BATCH:0 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77371/A77371.CBTEAANXX_2.bam...finished Mon.Oct.30.15.33.06.PDT.2017
#__build__:hg19
#__jars__:/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/jars
#__samtools__:/projects/edcc_new/reference_epigenomes/housekeeping/samtools/1.3.1/bin
#__bedtools__:/projects/edcc_new/reference_epigenomes/housekeeping/bin/bedtools-2.26/bedtools2-2.26.0/bin
hg19 /projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources
#__using__:CHR_BWA2UCSC_NAMES=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19.bwa2ucsc.names
#__using__:CHROM_SIZES=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19.chrom.sizes
#__using__:TSS=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/ensembl_TSS.uniq.sorted.bed.uniq
#__using__:GENEBODIES=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/ensembl_genenames.uniq.sorted.bed
#__using__:ZNF=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/ensembl_Znf.uniq.sorted.bed
#__using__:HOX=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/HOX_clusters.sorted.bed
#__using__:ENHANCERS=/projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19/encode_ChromHMM_enhancer_state_7.sorted.merged.bed
#config hg19 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77376/A77376.CBTEAANXX_2.bam  Mon.Oct.30.15.33.06.PDT.2017-bioqc01
/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77376/A77376.CBTEAANXX_2.bam __mode__:1  /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77376/A77376.CBTEAANXX_2.bam
#samtools:/projects/edcc_new/reference_epigenomes/housekeeping/samtools/1.3.1/bin Mon.Oct.30.15.33.06.PDT.2017-bioqc01
return:0 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77376/A77376.CBTEAANXX_2.bam.dedupstats
return:0 flagstats /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77376/A77376.CBTEAANXX_2.bam
#__alreadyIndexed__:/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77376/A77376.CBTEAANXX_2.bam.bai
return:0 idxstats /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77376/A77376.CBTEAANXX_2.bam
return:0 [md5] /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77376/A77376.CBTEAANXX_2.bam
#return:0 indexing /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77376/A77376.CBTEAANXX_2.bam
#__NO_WWW_SET_TRACKS_NOT_PUBLISHED:/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77376/wig/A77376.CBTEAANXX_2.q5.F1028.PET.wig.bw
{"wig-ok":0, "bam":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77376/A77376.CBTEAANXX_2.bam", "prefix":"A77376.CBTEAANXX_2", "log":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77376/wig/A77376.CBTEAANXX_2.PET.q5.F1028.PET.wig.gz.log", "wig-cmd":"/gsc/software/linux-x86_64/jre1.8.0_66/bin/java -jar -Xmx10G /projects/tab/dev/code/thirdParty/ChIPProductionPipeline/jars/BAM2WIG.jar -bamFile /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77376/A77376.CBTEAANXX_2.bam -F 1028 -q 5 -cp -n A77376.CBTEAANXX_2 -chr /projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19.bwa2ucsc.names -out /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77376/wig", "outdir":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77376/wig", "wig":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77376/wig/A77376.CBTEAANXX_2.q5.F1028.PET.wig.gz", "bw-ok":0, "bw":"/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77376/wig/A77376.CBTEAANXX_2.q5.F1028.PET.wig.bw", "bw-cmd":"/projects/edcc_new/reference_epigenomes/housekeeping/EDCCProd/Utils/ucsc/binaries/wigToBigWig /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77376/wig/A77376.CBTEAANXX_2.q5.F1028.PET.wig.gz /projects/tab/dev/code/thirdParty/ChIPProductionPipeline/resources/hg19.chrom.sizes /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77376/wig/A77376.CBTEAANXX_2.q5.F1028.PET.wig.bw"}
return:0:0 BigWig/Wig
__NO_PEAKCALLING_OR_DOMAIN_STATISTICS_COMPUTED__:/projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77376/A77376.CBTEAANXX_2.bam
#config:ok hg19 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77376/A77376.CBTEAANXX_2.bam  Mon.Oct.30.15.56.33.PDT.2017-bioqc01
#BATCH:0 /projects/bioqc_dev/ilitests/BQ-861/cPin/IX5776/A77376/A77376.CBTEAANXX_2.bam...finished Mon.Oct.30.15.56.33.PDT.2017


..finishedOK