[bwa_index] Pack FASTA... 25.29 sec
[bwa_index] Construct BWT for the packed sequence...
[BWTIncCreate] textLength=6274909010, availableWord=453525580
[BWTIncConstructFromPacked] 10 iterations done. 99999986 characters processed.
[BWTIncConstructFromPacked] 20 iterations done. 199999986 characters processed.
[BWTIncConstructFromPacked] 30 iterations done. 299999986 characters processed.
[BWTIncConstructFromPacked] 40 iterations done. 399999986 characters processed.
[BWTIncConstructFromPacked] 50 iterations done. 499999986 characters processed.
[BWTIncConstructFromPacked] 60 iterations done. 599999986 characters processed.
[BWTIncConstructFromPacked] 70 iterations done. 699999986 characters processed.
[BWTIncConstructFromPacked] 80 iterations done. 799999986 characters processed.
[BWTIncConstructFromPacked] 90 iterations done. 899999986 characters processed.
[BWTIncConstructFromPacked] 100 iterations done. 999999986 characters processed.
[BWTIncConstructFromPacked] 110 iterations done. 1099999986 characters processed.
[BWTIncConstructFromPacked] 120 iterations done. 1199999986 characters processed.
[BWTIncConstructFromPacked] 130 iterations done. 1299999986 characters processed.
[BWTIncConstructFromPacked] 140 iterations done. 1399999986 characters processed.
[BWTIncConstructFromPacked] 150 iterations done. 1499999986 characters processed.
[BWTIncConstructFromPacked] 160 iterations done. 1599999986 characters processed.
[BWTIncConstructFromPacked] 170 iterations done. 1699999986 characters processed.
[BWTIncConstructFromPacked] 180 iterations done. 1799999986 characters processed.
[BWTIncConstructFromPacked] 190 iterations done. 1899999986 characters processed.
[BWTIncConstructFromPacked] 200 iterations done. 1999999986 characters processed.
[BWTIncConstructFromPacked] 210 iterations done. 2099999986 characters processed.
[BWTIncConstructFromPacked] 220 iterations done. 2199999986 characters processed.
[BWTIncConstructFromPacked] 230 iterations done. 2299999986 characters processed.
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[BWTIncConstructFromPacked] 260 iterations done. 2599999986 characters processed.
[BWTIncConstructFromPacked] 270 iterations done. 2699999986 characters processed.
[BWTIncConstructFromPacked] 280 iterations done. 2799999986 characters processed.
[BWTIncConstructFromPacked] 290 iterations done. 2899999986 characters processed.
[BWTIncConstructFromPacked] 300 iterations done. 2999999986 characters processed.
[BWTIncConstructFromPacked] 310 iterations done. 3099999986 characters processed.
[BWTIncConstructFromPacked] 320 iterations done. 3199999986 characters processed.
[BWTIncConstructFromPacked] 330 iterations done. 3299999986 characters processed.
[BWTIncConstructFromPacked] 340 iterations done. 3399999986 characters processed.
[BWTIncConstructFromPacked] 350 iterations done. 3499999986 characters processed.
[BWTIncConstructFromPacked] 360 iterations done. 3599999986 characters processed.
[BWTIncConstructFromPacked] 370 iterations done. 3699999986 characters processed.
[BWTIncConstructFromPacked] 380 iterations done. 3799999986 characters processed.
[BWTIncConstructFromPacked] 390 iterations done. 3899999986 characters processed.
[BWTIncConstructFromPacked] 400 iterations done. 3999999986 characters processed.
[BWTIncConstructFromPacked] 410 iterations done. 4099999986 characters processed.
[BWTIncConstructFromPacked] 420 iterations done. 4199999986 characters processed.
[BWTIncConstructFromPacked] 430 iterations done. 4299999986 characters processed.
[BWTIncConstructFromPacked] 440 iterations done. 4399999986 characters processed.
[BWTIncConstructFromPacked] 450 iterations done. 4499999986 characters processed.
[BWTIncConstructFromPacked] 460 iterations done. 4599999986 characters processed.
[BWTIncConstructFromPacked] 470 iterations done. 4699999986 characters processed.
[BWTIncConstructFromPacked] 480 iterations done. 4799999986 characters processed.
[BWTIncConstructFromPacked] 490 iterations done. 4899999986 characters processed.
[BWTIncConstructFromPacked] 500 iterations done. 4999999986 characters processed.
[BWTIncConstructFromPacked] 510 iterations done. 5099999986 characters processed.
[BWTIncConstructFromPacked] 520 iterations done. 5199999986 characters processed.
[BWTIncConstructFromPacked] 530 iterations done. 5299999986 characters processed.
[BWTIncConstructFromPacked] 540 iterations done. 5399999986 characters processed.
[BWTIncConstructFromPacked] 550 iterations done. 5499999986 characters processed.
[BWTIncConstructFromPacked] 560 iterations done. 5599999986 characters processed.
[BWTIncConstructFromPacked] 570 iterations done. 5694304802 characters processed.
[BWTIncConstructFromPacked] 580 iterations done. 5778119186 characters processed.
[BWTIncConstructFromPacked] 590 iterations done. 5852609618 characters processed.
[BWTIncConstructFromPacked] 600 iterations done. 5918812898 characters processed.
[BWTIncConstructFromPacked] 610 iterations done. 5977650514 characters processed.
[BWTIncConstructFromPacked] 620 iterations done. 6029941522 characters processed.
[BWTIncConstructFromPacked] 630 iterations done. 6076413890 characters processed.
[BWTIncConstructFromPacked] 640 iterations done. 6117714626 characters processed.
[BWTIncConstructFromPacked] 650 iterations done. 6154418802 characters processed.
[BWTIncConstructFromPacked] 660 iterations done. 6187037554 characters processed.
[BWTIncConstructFromPacked] 670 iterations done. 6216025154 characters processed.
[BWTIncConstructFromPacked] 680 iterations done. 6241785362 characters processed.
[BWTIncConstructFromPacked] 690 iterations done. 6264677074 characters processed.
[bwt_gen] Finished constructing BWT in 695 iterations.
[bwa_index] 3503.26 seconds elapse.
[bwa_index] Update BWT... 17.00 sec
[bwa_index] Pack forward-only FASTA... 15.43 sec
[bwa_index] Construct SA from BWT and Occ... 1125.05 sec
[main] Version: 0.7.17-r1188
[main] CMD: bwa index -p genomes/hs37d5/bwa_index/bwa-0.7.17/genome.fa genomes/hs37d5/genome_fasta/genome.fa
[main] Real time: 4764.973 sec; CPU: 4686.034 sec