ezh2_wt_input

Mapping stats: 92% aligned (47.0M aligned out of 51.0M total) 

Number of alignments in various mapping quality (MAPQ) intervals and number of unmapped sequences. The percentage and number of alignments in each category is given in brackets.

Mean Base Quality

Mean base quality of reads with low and high mapping quality.

Error Profile MAPQ >= 30

Mismatches Insertions Deletions

Error Profile MAPQ >= 20

Mismatches Insertions Deletions

Error Profile MAPQ >= 10

Mismatches Insertions Deletions

Error Profile MAPQ >= 3

Mismatches Insertions Deletions

Error Profile MAPQ < 3

Mismatches Insertions Deletions

Nucleotide Over-representation along read

Mer Q 1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
AAMAPQ >= 30 14.6 12.0 12.3 11.2 12.1 12.4 12.2 10.6 10.2 10.7 10.9 11.0 11.0 10.9 10.9 10.8 10.6 10.6 10.5 10.5 10.4 10.5 10.4 10.4 10.5 10.4 10.4 10.4 10.4 10.3 10.3 10.3 10.3 10.3 10.3 10.3 10.4 10.3 10.3 10.3 10.3 10.3 10.2 10.2 10.3 10.3 10.3 10.3 10.3 10.3 10.3 10.3 10.3 10.3 10.3 10.3 10.3 10.3 10.3 10.3 10.3 10.3 10.3 10.3 10.3 10.3 10.3 10.3 10.3 10.3 10.3 10.3 10.3 10.3
AAMAPQ >= 20 15.6 12.1 11.9 10.6 11.9 12.5 12.0 10.4 9.7 10.5 11.2 11.0 10.8 10.5 10.8 11.0 10.3 10.2 10.0 10.1 10.3 10.2 10.1 10.1 10.5 10.3 10.1 10.1 10.1 10.1 10.3 9.8 10.0 10.2 10.0 10.1 10.2 10.1 10.0 10.2 10.1 10.1 9.9 10.0 9.9 10.2 10.1 10.0 10.3 10.1 10.0 10.2 9.9 10.2 10.3 10.3 10.3 10.2 10.2 10.6 10.4 10.7 10.5 10.6 10.9 10.7 10.8 10.7 10.6 10.6 10.1 9.8 9.5 9.5
AAMAPQ >= 10 13.0 10.7 10.2 8.7 10.3 10.8 10.2 8.8 8.3 9.1 9.7 9.6 9.1 8.6 9.0 9.6 8.8 8.6 8.4 8.7 8.6 8.5 8.6 8.6 9.2 8.9 8.6 8.6 8.6 8.4 8.6 8.3 8.5 8.9 8.3 8.6 8.9 8.7 8.9 8.9 8.9 8.9 8.4 8.6 8.3 9.0 8.8 8.5 8.8 8.9 8.8 9.0 8.5 8.8 8.7 8.9 9.0 8.7 8.9 9.3 9.3 9.6 9.1 9.2 9.2 9.2 9.5 9.3 9.2 9.3 9.0 9.4 9.4 9.3
AAMAPQ >= 3 12.3 10.2 9.9 8.6 10.1 10.2 10.3 8.8 9.2 9.5 9.8 10.0 9.1 8.9 9.0 9.5 8.8 8.6 8.3 8.8 8.6 9.0 8.4 8.3 8.9 8.1 8.4 8.4 8.6 8.6 8.6 8.7 9.2 9.4 8.9 9.0 9.3 8.9 8.7 8.7 8.5 9.1 8.3 8.5 8.3 9.1 8.9 8.9 8.6 9.0 8.9 9.2 9.0 8.6 8.7 9.0 8.8 8.5 8.9 9.2 9.1 9.7 9.3 9.2 9.0 9.2 9.5 9.4 9.3 9.3 8.8 9.3 9.4 9.2
AAMAPQ < 3 13.9 11.6 11.1 9.6 10.9 11.5 11.1 9.5 8.8 9.8 10.7 10.4 10.1 9.7 10.2 10.5 9.8 9.6 9.2 9.6 9.7 9.5 9.6 9.6 9.9 9.8 9.6 9.8 9.6 9.6 9.9 9.5 9.6 9.7 9.5 9.7 9.8 9.8 9.8 9.9 9.7 9.8 9.5 9.6 9.4 9.8 9.5 9.3 9.6 9.5 9.6 9.7 9.4 9.6 9.7 9.8 9.8 9.6 9.6 9.8 9.8 10.0 9.8 9.9 9.9 9.8 10.2 10.1 10.0 10.0 9.6 9.7 9.7 9.5
AAUnmapped 18.0 13.8 13.5 12.2 13.9 14.5 13.9 11.8 10.9 12.1 13.2 13.0 12.7 12.6 13.1 13.3 12.7 12.1 11.6 12.2 12.7 12.4 12.2 12.1 12.8 12.9 12.3 12.0 11.6 12.2 12.6 12.0 11.7 11.5 12.2 12.4 12.3 12.0 11.6 12.3 12.3 12.2 11.7 11.4 11.8 12.0 11.7 11.3 10.9 11.2 11.4 11.3 10.8 10.8 11.3 11.7 11.4 10.9 10.5 11.1 11.3 11.1 10.7 10.3 10.9 10.8 10.8 10.3 9.9 10.2 10.1 9.7 9.2 8.9
ACMAPQ >= 30 4.5 4.1 5.4 5.0 5.6 5.1 5.3 4.5 4.5 4.6 4.8 4.8 4.9 4.9 5.0 5.1 5.1 5.0 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.2 5.2 5.2 5.1 5.1 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.1 5.1 5.2 5.1 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1
ACMAPQ >= 20 5.2 4.2 5.4 4.9 5.6 4.8 5.2 4.4 4.5 4.5 4.6 4.8 4.8 5.1 4.9 5.1 5.2 5.2 4.8 5.2 5.0 5.0 5.0 4.9 5.0 4.9 5.0 5.0 4.9 5.1 4.9 5.3 5.0 5.1 5.0 5.1 5.0 5.3 5.2 5.2 5.3 5.3 5.3 5.0 5.4 5.0 5.3 5.0 5.1 5.2 5.0 5.0 5.0 5.0 5.1 5.1 5.1 5.1 5.1 5.1 5.2 5.2 5.1 5.1 5.1 5.0 5.0 5.0 5.0 4.9 5.0 4.8 4.9 4.8
ACMAPQ >= 10 4.3 4.0 5.3 4.8 5.5 4.7 5.2 4.1 4.4 4.4 4.6 4.8 4.9 5.0 5.0 5.1 5.1 4.9 4.7 4.9 5.1 4.8 4.9 4.7 4.9 4.9 4.8 4.7 4.7 5.1 4.7 5.1 4.8 4.9 4.9 5.0 4.8 5.0 5.0 5.0 5.3 5.1 5.1 4.7 5.0 4.6 5.1 4.8 4.9 5.2 4.7 5.0 4.6 4.8 5.0 5.0 5.1 5.1 5.1 5.2 5.3 5.2 5.2 5.0 5.1 5.0 4.9 5.0 5.0 4.9 4.9 4.8 4.8 5.0
ACMAPQ >= 3 4.4 4.2 5.6 5.2 5.6 5.0 5.6 4.5 4.9 4.9 5.3 5.0 5.2 5.3 5.7 5.3 5.7 5.2 5.2 5.3 5.4 5.2 5.6 5.1 5.6 5.2 5.2 5.1 5.0 5.4 5.3 5.5 5.1 5.2 5.0 5.4 5.1 5.6 5.3 5.1 5.8 5.3 5.4 5.3 5.2 5.2 5.4 5.3 5.3 5.2 5.2 5.2 5.1 5.1 4.9 5.1 5.3 5.5 5.3 5.4 5.5 5.4 5.3 5.3 5.2 5.1 5.3 5.2 5.1 4.9 5.3 5.0 5.3 5.1
ACMAPQ < 3 4.3 4.0 5.3 4.7 5.4 4.7 5.1 4.3 4.4 4.4 4.6 4.6 4.8 4.9 4.9 4.9 5.1 5.0 4.8 5.0 4.9 4.8 4.9 4.7 5.0 4.9 4.9 4.9 4.9 5.0 4.8 5.1 4.9 4.9 4.8 5.0 4.8 4.9 5.1 5.1 5.2 5.0 5.1 4.8 5.1 4.9 5.1 4.9 5.0 5.0 4.8 5.0 4.9 5.0 5.0 5.0 5.0 5.2 5.2 5.3 5.1 5.0 5.1 5.1 5.0 5.0 4.9 5.0 4.9 4.9 4.9 4.8 4.9 4.9
ACUnmapped 5.6 4.1 5.3 4.5 5.4 4.6 4.9 4.4 4.3 4.4 4.5 4.6 4.6 4.7 4.8 4.8 5.0 4.9 4.8 4.9 4.9 4.8 4.6 4.5 4.8 4.8 4.8 4.8 4.8 4.9 5.0 5.0 4.8 4.7 4.7 5.0 4.7 4.9 4.9 4.9 5.0 4.9 4.9 4.5 5.0 4.7 4.9 4.6 4.7 4.7 4.7 4.7 4.7 4.7 4.8 4.8 4.7 4.9 4.8 4.9 4.9 4.8 4.8 4.6 4.5 4.8 4.6 4.6 4.4 4.5 4.4 4.3 4.2 4.1
AGMAPQ >= 30 10.8 5.8 6.7 8.0 7.4 6.9 5.6 5.6 5.8 6.3 6.6 6.7 6.8 6.9 7.0 7.0 7.1 7.2 7.2 7.2 7.1 7.2 7.3 7.2 7.2 7.2 7.2 7.3 7.2 7.3 7.2 7.2 7.2 7.2 7.2 7.3 7.2 7.2 7.2 7.3 7.2 7.3 7.2 7.3 7.2 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.4 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.4 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3
AGMAPQ >= 20 10.9 5.7 6.6 7.6 6.8 6.7 5.6 5.4 5.6 6.0 6.5 6.3 6.6 6.6 6.5 6.8 6.5 6.9 6.8 6.8 6.7 6.9 7.1 6.9 6.9 7.2 6.9 7.4 6.9 7.3 6.7 7.0 6.8 6.6 6.9 7.0 6.8 6.9 6.7 6.8 6.7 6.7 6.5 6.8 6.7 6.8 7.0 6.9 7.0 7.0 7.1 6.8 7.1 7.0 7.2 6.8 6.9 6.8 6.8 7.2 6.8 7.0 6.8 6.7 6.8 6.8 6.5 6.8 6.5 6.8 6.9 7.1 6.8 7.1
AGMAPQ >= 10 11.0 5.7 6.2 7.6 6.9 6.7 5.6 5.3 5.3 6.2 6.6 6.3 6.5 6.6 6.5 6.5 6.4 7.0 6.5 6.7 6.6 6.7 7.4 6.8 6.8 7.1 6.8 7.4 7.0 7.0 6.3 6.8 6.5 6.2 6.7 6.8 6.6 6.4 6.3 6.7 6.4 6.5 6.3 6.9 6.5 6.7 6.9 6.6 6.9 6.6 6.8 6.4 6.7 6.9 7.1 6.4 6.6 6.5 6.7 7.0 6.7 6.6 6.6 6.7 6.8 6.8 6.9 7.0 6.7 6.8 6.9 7.1 6.7 6.9
AGMAPQ >= 3 10.9 5.6 6.2 7.6 7.1 6.6 6.1 5.3 5.7 6.8 7.0 7.0 7.0 6.8 7.0 7.1 7.1 7.8 6.6 6.9 7.1 7.3 7.9 7.2 7.0 7.0 7.0 7.2 7.2 7.3 6.5 7.0 6.8 6.5 7.1 6.8 6.7 6.6 6.7 6.5 6.2 6.2 6.3 6.6 6.7 6.7 7.1 6.8 7.3 6.7 7.2 7.0 6.7 7.5 7.0 7.0 6.8 7.0 6.8 7.3 6.9 6.5 7.0 7.1 7.1 7.1 7.2 7.0 6.9 6.9 7.4 7.0 7.0 6.6
AGMAPQ < 3 10.5 5.5 6.4 7.5 6.7 6.5 5.4 5.2 5.4 6.0 6.4 6.3 6.6 6.6 6.5 6.8 6.6 6.8 6.4 6.4 6.5 6.7 6.9 6.6 6.5 6.7 6.7 6.9 6.8 6.7 6.4 6.7 6.5 6.5 6.5 6.6 6.5 6.6 6.4 6.6 6.5 6.5 6.3 6.7 6.4 6.6 6.7 6.5 6.7 6.5 6.7 6.4 6.7 6.6 6.7 6.5 6.6 6.5 6.5 6.9 6.5 6.7 6.6 6.6 6.7 6.8 6.5 6.9 6.7 6.7 7.0 6.9 6.6 6.6
AGUnmapped 9.9 5.2 6.3 6.7 6.3 6.1 5.1 5.3 5.1 5.5 5.9 5.7 6.1 6.0 6.2 6.2 6.0 6.2 6.2 6.2 6.3 6.3 6.4 6.2 6.3 6.5 6.5 6.6 6.5 6.4 6.6 6.4 6.4 6.3 6.4 6.5 6.3 6.6 6.2 6.4 6.5 6.3 6.3 6.4 6.3 6.3 6.5 6.3 6.6 6.5 6.8 6.4 6.7 6.4 6.6 6.5 6.5 6.4 6.5 6.7 6.6 6.8 6.7 6.7 6.8 7.0 6.8 7.3 7.3 7.5 7.8 7.8 7.8 7.9
ATMAPQ >= 30 18.2 8.4 12.5 8.5 9.5 9.6 10.7 9.7 8.3 8.4 8.4 8.3 8.3 8.2 8.1 8.2 8.1 8.1 8.1 8.1 8.0 8.0 8.0 7.9 7.9 7.9 7.8 7.9 7.9 7.8 7.9 7.8 7.8 7.9 7.8 7.8 7.9 7.9 7.9 7.9 7.9 7.9 7.9 7.8 7.8 7.8 7.8 7.8 7.8 7.8 7.8 7.8 7.8 7.7 7.8 7.8 7.8 7.8 7.7 7.7 7.8 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.8 7.8 7.8 7.8
ATMAPQ >= 20 18.9 8.8 12.2 8.5 9.0 10.1 10.9 9.4 8.3 8.1 9.1 8.7 8.6 8.3 8.0 8.7 8.5 8.2 8.4 8.1 8.3 8.4 8.0 8.2 7.8 8.0 8.3 8.0 8.0 7.9 7.9 8.2 8.0 8.0 7.9 8.0 8.3 8.0 7.9 8.1 8.0 8.3 7.9 7.9 8.1 7.9 8.2 7.6 7.6 8.2 8.1 7.9 8.1 7.5 8.1 8.2 7.8 8.1 7.6 7.9 8.2 7.8 8.2 7.8 8.1 8.2 8.1 8.3 8.1 8.6 8.6 8.5 8.5 8.1
ATMAPQ >= 10 16.7 8.8 11.1 8.0 8.0 9.6 10.4 8.6 7.5 7.4 8.8 8.5 7.9 7.9 7.2 8.4 8.2 7.7 7.9 7.8 7.9 7.9 7.5 8.0 7.2 7.7 8.1 7.7 8.0 7.8 7.6 8.0 8.0 7.9 7.6 7.5 8.3 8.2 7.9 7.9 7.8 8.2 7.7 7.6 8.0 7.6 8.1 7.4 7.3 8.1 8.0 7.6 8.1 7.2 8.2 7.9 7.6 8.1 7.2 7.7 8.1 7.6 8.0 7.6 7.6 7.7 7.5 8.0 7.3 7.7 8.0 7.7 8.1 7.6
ATMAPQ >= 3 16.6 8.0 10.6 7.9 7.9 8.5 9.5 8.3 6.6 7.5 7.6 7.8 7.4 7.0 6.7 7.3 7.1 7.0 7.0 7.0 7.0 7.3 7.2 6.6 6.9 7.5 6.8 7.2 7.1 6.8 7.1 7.2 7.3 7.2 6.8 7.2 7.4 7.8 7.4 7.2 7.5 7.5 7.1 6.8 7.1 7.0 6.9 7.1 7.0 7.3 7.3 7.1 7.1 7.1 7.2 7.0 7.5 7.5 6.8 7.2 7.6 7.2 7.3 7.2 7.0 7.0 7.0 7.5 6.8 7.3 7.4 7.3 7.4 7.3
ATMAPQ < 3 18.2 9.2 12.2 8.6 8.9 10.3 11.2 9.5 8.2 8.0 9.3 8.8 8.4 8.2 7.8 9.0 8.6 8.2 8.7 8.3 8.6 8.8 8.1 8.7 8.1 8.1 8.8 8.4 8.5 8.3 8.3 8.7 8.4 8.4 8.2 8.2 8.7 8.3 8.4 8.3 8.4 8.7 8.4 8.1 8.7 8.2 8.8 8.0 8.0 8.8 8.6 8.2 8.6 8.0 8.7 8.4 8.3 8.6 8.0 8.4 8.5 8.0 8.4 8.1 8.4 8.3 8.1 8.7 8.1 8.4 8.6 8.2 8.6 8.1
ATUnmapped 21.6 9.9 13.8 8.8 10.0 11.4 12.0 11.0 8.9 9.1 10.2 10.0 9.6 8.6 8.7 9.9 9.8 9.1 8.6 8.5 9.5 9.7 8.8 8.4 8.3 9.5 9.5 9.0 8.4 8.3 9.5 9.3 8.9 8.2 8.0 9.4 9.0 8.8 7.9 8.1 9.2 8.8 9.2 7.9 8.7 9.1 9.4 8.5 8.1 8.6 9.4 9.2 8.8 8.2 8.5 9.4 9.4 8.8 8.4 8.4 9.6 9.3 8.9 8.5 8.6 9.7 9.3 9.1 8.6 8.7 9.6 9.3 8.8 8.0
CAMAPQ >= 30 8.0 4.1 6.7 7.4 6.6 7.4 5.7 6.6 6.9 6.9 6.9 6.9 7.0 7.0 7.2 7.1 7.2 7.2 7.2 7.3 7.3 7.3 7.3 7.4 7.3 7.3 7.3 7.3 7.3 7.4 7.3 7.4 7.4 7.3 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.5 7.4 7.4 7.4 7.4 7.5 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.3 7.4 7.4 7.3 7.4 7.3
CAMAPQ >= 20 7.5 4.2 6.8 7.4 7.0 7.7 5.6 6.6 7.0 7.6 7.0 7.0 7.1 7.0 7.5 7.0 7.3 7.3 7.5 7.4 7.5 7.2 7.3 7.5 7.4 7.4 7.3 7.2 7.4 7.3 7.6 7.4 7.5 7.3 7.8 7.6 7.6 7.3 7.7 7.5 7.7 7.3 7.5 7.7 7.7 7.9 7.3 7.4 7.6 7.7 7.5 7.4 7.4 7.6 7.5 7.3 7.3 7.3 7.6 7.7 7.5 7.3 7.4 7.5 7.4 7.3 7.4 7.2 7.5 7.3 7.3 7.1 7.4 7.2
CAMAPQ >= 10 8.7 4.3 7.3 7.8 7.4 7.9 5.6 7.1 7.3 8.5 7.5 7.3 7.7 7.4 8.0 7.2 7.6 7.5 8.0 7.8 7.7 7.4 7.9 8.1 7.6 8.0 7.8 7.7 7.9 7.7 8.2 7.9 7.8 7.6 8.5 8.3 8.2 8.0 8.1 7.9 8.1 7.7 7.8 7.8 8.0 8.1 7.5 7.7 8.0 7.8 7.8 7.5 7.7 8.2 7.9 7.8 7.9 7.9 8.0 8.2 7.8 7.8 7.7 8.1 7.8 7.9 7.9 7.6 7.7 7.9 7.9 7.6 8.2 7.6
CAMAPQ >= 3 8.9 4.4 7.9 7.8 7.4 8.5 5.9 7.6 7.9 8.6 7.7 7.4 7.6 7.7 8.5 7.6 7.8 7.7 7.9 7.7 8.3 7.8 7.8 8.5 7.8 8.2 8.1 8.2 8.2 8.0 8.8 8.3 8.0 7.8 8.4 8.1 8.4 7.6 7.9 8.1 8.1 7.7 7.8 7.5 8.6 7.9 8.0 7.9 7.8 7.9 7.9 7.3 7.9 8.0 7.8 7.9 8.1 7.8 7.9 8.1 7.7 7.9 7.7 7.7 7.6 8.0 8.1 7.5 7.8 7.7 7.8 7.7 7.8 8.0
CAMAPQ < 3 8.5 4.3 7.2 7.8 7.3 8.1 5.8 7.0 7.4 8.2 7.4 7.3 7.3 7.4 7.9 7.4 7.3 7.6 7.8 7.6 7.9 7.4 7.7 7.8 7.5 7.9 7.9 7.6 7.7 7.7 8.1 7.8 7.8 7.7 8.0 8.0 7.9 7.6 7.8 7.7 7.9 7.6 7.6 7.9 7.9 7.9 7.5 7.7 8.0 7.9 7.7 7.6 7.7 7.9 7.8 7.7 7.9 7.7 8.1 8.1 7.8 7.7 7.7 7.9 7.8 7.7 7.9 7.5 7.7 7.7 7.7 7.6 7.8 7.6
CAUnmapped 6.8 4.2 6.1 7.1 7.0 7.4 5.4 5.9 6.6 7.5 6.7 6.6 6.1 6.7 7.2 6.6 6.5 6.3 7.0 7.6 7.1 6.6 6.3 6.8 7.3 6.9 6.7 6.3 6.8 7.5 7.1 6.8 6.4 6.8 7.6 7.0 6.9 6.3 7.1 7.4 7.1 6.8 6.4 7.1 7.3 7.2 6.4 6.5 6.9 7.6 7.0 6.7 6.4 6.8 7.4 6.8 6.5 6.3 6.9 7.4 6.9 6.4 6.2 6.7 7.1 6.5 6.3 6.0 6.4 6.8 6.4 5.9 5.8 6.3
CCMAPQ >= 30 3.8 2.8 4.0 3.2 3.5 3.8 4.2 4.5 4.2 4.3 4.3 4.4 4.4 4.7 4.6 4.6 4.7 4.8 4.8 4.8 4.8 4.8 4.8 4.8 4.8 4.8 4.8 4.8 4.8 4.8 4.7 4.8 4.8 4.9 4.9 4.8 4.9 4.8 4.9 4.9 4.9 4.9 4.9 4.9 4.9 4.9 4.9 4.9 4.9 4.9 4.9 4.9 4.9 4.8 4.9 4.9 4.9 4.9 4.9 5.0 4.9 4.9 5.0 4.9 4.9 4.9 4.9 4.9 4.9 4.9 4.8 4.9 4.8 4.9
CCMAPQ >= 20 3.3 2.7 3.9 3.6 3.7 3.8 4.2 4.5 4.7 4.5 4.3 4.2 4.2 4.8 4.5 4.6 4.7 4.7 4.9 4.9 4.7 4.7 4.6 4.6 4.8 4.7 4.8 4.8 4.7 4.7 4.6 4.7 4.9 4.9 5.1 4.8 4.9 4.8 5.0 5.0 4.8 4.9 5.0 5.1 5.0 4.9 4.8 5.0 5.1 5.1 4.8 4.7 5.0 4.9 4.8 4.8 4.8 4.9 5.0 5.1 4.9 4.9 5.0 5.0 4.8 5.0 4.8 4.9 4.9 4.8 4.8 4.9 4.9 5.2
CCMAPQ >= 10 4.3 3.1 4.7 4.3 4.3 4.3 5.0 5.4 5.8 5.4 4.9 4.8 4.8 5.9 5.2 5.4 5.7 5.5 5.7 5.8 5.5 5.6 5.5 5.3 5.7 5.5 5.8 5.7 5.3 5.4 5.4 5.5 5.7 5.7 5.9 5.7 5.9 5.5 5.7 5.7 5.5 5.9 6.0 6.1 6.1 6.2 5.8 6.2 6.2 6.0 5.6 5.5 6.0 5.6 5.7 5.7 5.8 5.8 6.0 6.1 5.5 5.7 6.1 5.9 5.6 5.9 5.8 5.8 5.9 5.7 5.5 5.9 5.8 6.1
CCMAPQ >= 3 4.5 3.4 4.8 4.7 4.6 4.5 5.3 6.1 5.9 5.5 5.0 4.8 5.1 6.1 5.5 6.0 5.9 6.1 6.0 6.1 5.9 5.6 5.7 5.9 6.2 5.9 6.0 6.0 5.5 6.0 5.7 5.6 6.0 6.2 6.1 6.1 5.8 5.7 6.2 6.1 5.7 6.1 6.3 6.8 6.7 7.0 6.3 6.5 7.0 6.5 6.0 6.1 6.2 5.7 5.9 6.0 5.9 6.0 6.3 6.1 5.7 6.0 5.9 5.9 5.7 6.0 5.9 6.0 5.9 5.8 5.8 6.4 6.6 6.7
CCMAPQ < 3 4.0 2.8 4.2 4.1 4.0 3.9 4.5 4.8 5.1 4.9 4.5 4.4 4.5 5.1 4.8 4.8 5.0 5.0 5.1 5.1 5.0 5.0 4.9 5.0 5.1 5.0 5.1 4.9 4.9 5.1 4.9 4.8 5.1 5.1 5.3 5.1 5.0 4.8 5.0 5.2 4.9 5.0 5.3 5.2 5.2 5.2 5.1 5.4 5.3 5.2 5.0 5.0 5.2 5.0 5.1 5.2 5.0 5.2 5.3 5.3 5.1 5.1 5.2 5.2 5.1 5.1 5.0 5.0 5.1 4.9 5.0 5.1 5.2 5.3
CCUnmapped 2.7 2.4 3.6 3.8 3.7 3.4 3.5 3.9 4.5 4.0 3.7 3.5 3.8 4.5 4.1 3.8 3.6 4.1 4.7 4.4 4.1 3.7 4.1 4.7 4.3 4.1 3.8 4.3 4.8 4.4 4.2 3.9 4.4 5.0 4.7 4.3 4.2 4.5 5.1 4.9 4.5 4.2 4.6 5.2 4.8 4.4 4.4 4.8 5.3 5.0 4.6 4.3 4.7 5.2 4.7 4.5 4.1 4.5 5.1 4.8 4.4 4.2 4.5 5.0 4.6 4.3 4.0 4.3 4.9 4.4 4.2 3.9 4.3 4.9
CGMAPQ >= 30 0.6 0.4 0.4 0.7 0.6 0.7 0.5 0.8 0.8 0.7 0.7 0.8 0.8 0.8 1.0 0.9 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.8 0.9 0.8 0.8 0.9 0.9 0.9 0.9 0.8 0.9 0.9 0.8 0.9 0.9 0.9 0.8 0.8 0.9 0.8 0.8 0.8 0.9 0.8 0.8 0.9 0.9 0.8 0.9 0.9 0.9 0.8 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9 0.9
CGMAPQ >= 20 1.0 0.5 0.7 1.3 1.2 1.4 0.8 1.4 1.6 1.3 1.2 1.1 1.3 1.4 1.6 1.5 1.3 1.3 1.4 1.3 1.4 1.5 1.4 1.4 1.4 1.4 1.4 1.3 1.4 1.5 1.5 1.6 1.4 1.4 1.7 1.5 1.5 1.5 1.6 1.6 1.5 1.5 1.5 1.5 1.6 1.4 1.4 1.5 1.4 1.5 1.4 1.4 1.5 1.5 1.5 1.5 1.5 1.7 1.5 1.5 1.5 1.6 1.6 1.5 1.6 1.5 1.4 1.5 1.5 1.5 1.5 1.5 1.6 1.6
CGMAPQ >= 10 1.4 0.6 0.9 1.8 1.6 1.8 1.1 1.9 2.1 1.6 1.6 1.6 1.7 2.0 2.1 2.0 1.7 1.7 1.9 1.9 1.8 2.0 1.8 1.8 1.8 1.8 1.8 1.6 1.7 1.9 1.8 2.1 1.9 1.6 2.0 1.9 1.9 1.9 1.8 2.1 1.8 2.0 1.8 1.7 1.8 1.8 1.8 1.8 1.7 1.9 1.8 1.8 1.9 1.9 1.9 1.8 1.8 2.1 2.0 2.0 1.8 1.9 1.9 2.0 2.0 1.8 1.9 1.8 1.8 1.9 1.9 1.7 1.7 1.9
CGMAPQ >= 3 1.1 0.6 0.7 1.1 1.4 1.3 0.9 1.6 1.4 1.0 1.3 1.4 1.3 1.3 1.5 1.5 1.3 1.6 1.3 1.6 1.5 1.7 1.5 1.5 1.5 1.6 1.5 1.4 1.6 1.5 1.6 1.5 1.6 1.3 1.6 1.5 1.5 1.6 1.5 1.7 1.4 1.5 1.5 1.4 1.5 1.5 1.5 1.3 1.4 1.6 1.5 1.4 1.6 1.7 1.4 1.4 1.5 1.4 1.5 1.3 1.5 1.4 1.5 1.3 1.4 1.3 1.4 1.4 1.5 1.6 1.4 1.3 1.3 1.5
CGMAPQ < 3 1.1 0.5 0.7 1.4 1.3 1.5 0.8 1.5 1.8 1.4 1.3 1.3 1.4 1.6 1.7 1.6 1.4 1.4 1.6 1.5 1.5 1.6 1.5 1.5 1.6 1.6 1.6 1.4 1.5 1.6 1.5 1.7 1.5 1.5 1.7 1.6 1.6 1.6 1.6 1.7 1.5 1.6 1.5 1.5 1.6 1.5 1.5 1.6 1.5 1.6 1.5 1.5 1.6 1.5 1.6 1.5 1.5 1.6 1.5 1.5 1.6 1.5 1.6 1.5 1.6 1.5 1.5 1.5 1.5 1.5 1.6 1.4 1.5 1.5
CGUnmapped 0.9 0.6 0.8 1.4 1.2 1.2 0.8 1.3 1.5 1.3 1.2 1.3 1.3 1.5 1.7 1.4 1.3 1.3 1.5 1.4 1.4 1.3 1.4 1.5 1.6 1.5 1.4 1.5 1.8 1.7 1.6 1.5 1.6 1.7 1.8 1.7 1.6 1.7 1.8 1.8 1.7 1.6 1.7 1.8 1.7 1.7 1.7 1.8 1.8 1.9 1.8 1.7 1.9 2.1 2.0 1.9 1.9 2.1 2.2 2.2 2.2 2.1 2.3 2.4 2.5 2.4 2.4 2.6 2.8 2.8 2.9 3.0 3.3 3.5
CTMAPQ >= 30 13.6 4.2 6.2 6.4 6.0 6.7 6.9 7.4 6.6 6.8 6.7 6.8 6.7 6.6 6.7 6.6 6.7 6.8 6.7 6.7 6.7 6.7 6.7 6.7 6.8 6.8 6.7 6.8 6.8 6.7 6.8 6.8 6.9 6.8 6.8 6.7 6.8 6.8 6.8 6.8 6.8 6.9 6.8 6.9 6.8 6.8 6.8 6.8 6.8 6.8 6.9 6.8 6.8 6.8 6.8 6.8 6.8 6.9 6.8 6.8 6.9 6.8 6.8 6.8 6.8 6.8 6.8 6.8 6.8 6.8 6.8 6.7 6.8 6.7
CTMAPQ >= 20 11.8 4.1 6.1 6.1 5.7 6.4 6.6 7.2 6.2 6.6 6.4 6.5 6.5 6.2 6.4 6.4 6.2 6.8 6.4 6.5 6.7 6.5 6.6 6.3 6.5 6.5 6.4 6.5 6.3 6.3 6.3 6.2 6.5 6.2 6.4 6.2 6.3 6.3 6.3 6.5 6.4 6.8 6.7 6.6 6.5 6.6 6.6 6.5 6.4 6.6 6.6 6.5 6.4 6.1 6.5 6.2 6.5 6.5 6.4 6.3 6.6 6.2 6.2 6.1 6.5 6.3 6.4 6.2 6.4 6.0 6.2 6.1 6.3 6.2
CTMAPQ >= 10 13.0 4.0 6.1 6.6 5.9 6.7 6.6 7.6 6.2 6.7 6.4 6.6 6.7 6.2 6.7 6.6 6.3 7.0 6.2 6.5 6.7 6.5 6.6 6.0 6.5 6.4 6.4 6.5 6.4 6.2 6.3 6.2 6.9 6.2 6.6 6.1 6.3 6.5 6.4 6.5 6.4 7.1 6.7 7.0 6.5 6.7 6.9 6.6 6.6 7.0 7.0 6.7 6.8 6.0 6.6 6.4 6.8 6.9 6.4 6.7 7.1 6.6 6.5 6.4 6.8 6.6 7.0 6.8 6.7 6.3 6.4 6.0 6.4 6.2
CTMAPQ >= 3 13.9 4.1 6.5 6.7 6.6 7.1 6.6 7.7 6.3 6.4 6.6 6.9 6.9 6.4 6.9 6.7 6.6 7.2 6.6 6.6 6.8 6.4 6.3 5.9 7.3 6.5 6.5 6.7 6.4 6.1 6.3 6.4 6.7 6.3 6.7 6.4 6.6 6.7 6.6 6.8 6.5 7.4 6.9 7.6 6.6 6.7 7.2 6.6 6.8 7.2 7.3 6.9 7.2 6.5 7.0 6.8 6.9 7.2 7.0 7.2 7.2 7.0 7.0 6.8 7.0 6.8 6.9 7.2 6.6 6.5 6.4 6.2 6.6 6.4
CTMAPQ < 3 12.6 3.8 5.9 6.2 5.8 6.5 6.5 7.1 6.1 6.5 6.3 6.2 6.4 6.1 6.2 6.4 6.2 6.7 6.2 6.4 6.5 6.3 6.4 6.0 6.4 6.3 6.1 6.3 6.2 6.1 6.4 6.2 6.5 6.1 6.4 6.2 6.4 6.2 6.2 6.3 6.3 6.6 6.5 6.6 6.3 6.5 6.4 6.4 6.3 6.5 6.6 6.4 6.5 6.1 6.4 6.3 6.3 6.4 6.4 6.3 6.8 6.4 6.4 6.3 6.5 6.4 6.5 6.4 6.3 6.2 6.4 6.1 6.3 6.3
CTUnmapped 9.9 3.8 5.6 5.5 5.4 5.9 6.0 6.3 5.6 5.8 5.7 5.5 5.7 5.3 5.4 5.5 5.6 5.8 5.6 5.6 5.8 5.6 5.8 5.3 5.5 5.4 5.4 5.3 5.4 5.2 5.5 5.5 5.6 5.2 5.4 5.3 5.5 5.3 5.3 5.3 5.5 5.5 5.6 5.4 5.5 5.5 5.4 5.4 5.4 5.3 5.6 5.3 5.4 5.1 5.4 5.2 5.5 5.2 5.3 5.2 5.4 5.3 5.3 5.1 5.2 5.1 5.3 5.1 5.1 4.9 5.1 4.9 4.9 4.8
GAMAPQ >= 30 3.7 7.2 5.8 6.0 7.2 6.4 5.5 4.1 5.0 5.5 5.6 5.8 5.8 5.9 5.9 6.1 6.1 6.1 6.1 6.1 6.2 6.2 6.2 6.2 6.2 6.1 6.2 6.3 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.3 6.2 6.3 6.2 6.3 6.2 6.2 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.4 6.3 6.3 6.3 6.3 6.3 6.3 6.3
GAMAPQ >= 20 4.3 7.8 6.1 6.6 8.3 7.0 6.1 4.6 5.5 6.8 6.1 6.5 6.4 6.4 6.8 6.5 6.6 6.5 6.5 6.7 6.6 6.9 6.8 6.7 6.8 6.7 7.4 7.0 7.2 6.7 6.7 7.0 6.8 6.7 6.6 6.8 6.8 6.6 6.9 6.8 6.9 6.6 6.7 6.6 6.8 6.9 6.5 6.8 7.0 6.8 6.8 6.8 6.8 7.2 7.0 6.9 6.9 6.7 7.4 6.7 7.2 6.8 6.8 6.9 6.9 6.8 7.0 6.5 6.9 6.6 6.8 6.7 6.6 7.0
GAMAPQ >= 10 4.7 8.1 6.3 6.9 8.5 7.5 6.4 4.5 6.0 7.0 6.4 6.5 6.4 6.6 7.3 6.9 7.0 6.7 6.8 6.9 7.0 7.5 7.1 6.9 7.2 6.8 7.6 7.4 7.4 6.8 7.0 7.1 7.2 6.6 6.8 7.1 6.6 7.0 6.9 7.1 7.3 6.8 7.1 7.0 7.1 7.2 6.6 7.0 7.4 7.1 6.8 6.9 7.1 7.4 7.3 7.1 7.0 6.8 7.6 7.4 7.3 6.9 7.0 6.8 7.1 6.9 7.3 6.8 7.1 7.2 7.5 7.4 7.0 7.1
GAMAPQ >= 3 3.8 7.0 5.7 6.2 6.8 6.7 5.7 4.2 5.4 5.9 6.1 5.7 5.9 5.9 5.9 6.2 6.6 5.8 6.3 6.2 6.8 7.0 6.2 6.6 6.3 6.1 6.8 6.6 6.5 6.2 6.4 6.6 6.3 6.1 6.4 6.3 6.2 6.6 6.0 6.5 6.5 5.7 6.1 6.3 6.1 6.5 6.2 6.3 6.6 6.4 6.4 6.3 6.6 6.4 6.8 6.3 6.5 6.5 6.9 6.8 6.7 6.3 6.5 6.2 6.4 6.5 6.6 6.1 6.3 6.9 6.8 7.0 6.2 6.5
GAMAPQ < 3 4.7 8.1 6.2 6.7 8.6 7.4 6.3 4.6 5.7 7.1 6.4 6.7 6.6 6.8 7.3 6.9 6.9 6.8 6.8 7.1 6.9 7.2 7.2 6.9 7.0 6.9 7.4 7.2 7.2 7.1 6.9 7.0 7.0 6.6 6.9 7.0 6.9 7.0 7.0 7.0 7.2 6.9 6.9 7.0 7.0 7.2 6.5 7.1 7.2 7.0 6.9 7.0 7.0 7.3 7.2 6.9 7.0 6.9 7.3 6.8 7.1 7.0 7.0 7.0 6.9 7.0 7.4 6.9 7.2 7.1 7.2 7.3 6.7 7.1
GAUnmapped 4.3 7.5 5.5 6.3 8.0 6.9 5.8 4.3 5.4 6.7 6.0 6.3 5.9 6.5 6.9 6.6 6.3 6.0 6.3 7.0 6.7 6.5 6.2 6.8 7.2 6.9 7.0 6.5 7.0 7.6 7.0 6.8 6.4 6.8 7.2 6.9 6.7 6.2 7.0 7.2 7.0 6.9 6.4 6.8 7.1 6.9 6.5 6.4 6.8 7.3 7.0 6.9 6.6 7.2 7.4 7.2 7.0 6.6 7.3 7.5 7.5 7.1 6.9 7.5 7.8 7.9 7.7 7.3 8.1 8.6 8.5 8.3 8.1 9.0
GCMAPQ >= 30 1.4 2.3 2.8 3.0 3.7 3.1 3.6 3.0 3.3 3.6 3.7 3.8 3.9 3.9 3.9 4.0 4.1 4.0 4.1 4.0 4.0 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.2 4.2 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.2 4.1 4.1 4.1 4.1 4.2 4.1 4.2 4.2 4.1 4.1 4.2 4.1 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.1 4.2 4.2 4.2 4.2 4.1 4.2 4.2 4.2 4.1 4.1
GCMAPQ >= 20 1.3 2.3 2.8 3.0 3.5 3.0 3.5 2.9 3.3 3.5 3.5 3.7 3.6 3.8 3.7 3.8 4.0 3.8 3.9 4.0 4.0 4.1 4.0 4.2 4.0 3.9 3.9 3.9 3.9 4.1 4.2 4.1 3.9 4.0 4.0 3.9 4.1 4.0 4.0 3.9 4.1 4.0 4.0 3.9 3.9 4.0 3.9 4.0 4.1 4.0 3.9 4.1 4.0 4.0 4.1 4.1 4.1 4.1 4.1 4.1 3.9 4.0 4.0 3.9 4.1 4.0 4.0 3.9 3.8 3.8 3.8 3.9 3.9 3.8
GCMAPQ >= 10 1.7 2.7 3.4 3.4 4.0 3.4 4.4 3.2 3.7 3.9 3.9 4.5 4.2 4.3 4.3 4.2 4.4 4.3 4.4 4.6 4.4 4.6 4.3 4.9 4.5 4.5 4.5 4.4 4.5 4.7 5.0 4.7 4.2 4.6 4.5 4.3 4.6 4.6 4.3 4.2 4.7 4.4 4.3 4.5 4.5 4.5 4.4 4.6 4.4 4.4 4.2 4.6 4.3 4.4 4.7 4.8 4.7 4.4 4.5 4.5 4.4 4.5 4.5 4.3 4.8 4.8 4.6 4.5 4.3 4.4 4.5 4.7 4.5 4.4
GCMAPQ >= 3 1.9 3.0 3.7 3.6 4.1 3.7 4.9 3.7 3.8 4.1 4.2 4.9 4.5 4.9 4.6 4.6 4.7 4.3 4.7 4.8 4.5 4.8 4.6 5.3 4.8 4.7 4.6 4.6 4.6 5.0 5.3 4.7 4.4 4.6 4.8 4.4 4.7 4.6 4.4 4.4 4.7 4.9 4.3 4.9 4.5 4.7 4.2 4.7 4.5 4.8 4.3 4.8 4.4 4.6 5.0 4.9 4.7 4.6 4.5 4.7 5.0 4.8 4.5 4.5 5.2 5.0 5.2 4.9 4.7 4.8 4.9 5.0 4.9 4.6
GCMAPQ < 3 1.4 2.3 2.9 3.0 3.6 3.0 3.6 2.9 3.3 3.5 3.5 3.8 3.7 3.9 3.8 3.8 4.1 3.8 4.0 4.1 3.9 4.0 3.9 4.1 4.0 3.9 3.9 4.0 3.9 4.1 4.1 4.0 3.9 4.0 4.0 3.8 4.0 4.0 3.8 3.8 3.9 3.9 3.9 3.9 3.9 3.9 3.9 4.0 4.0 4.0 3.7 4.0 3.8 4.0 4.0 3.9 4.0 4.0 3.9 4.1 4.0 3.9 4.0 3.9 4.1 4.1 4.0 3.9 3.8 3.9 3.9 4.1 4.0 3.9
GCUnmapped 1.0 1.8 2.3 2.5 3.0 2.5 2.7 2.4 2.7 2.9 2.9 2.9 2.9 3.0 3.0 3.1 3.1 3.3 3.5 3.4 3.2 3.2 3.2 3.4 3.3 3.2 3.3 3.4 3.3 3.4 3.3 3.3 3.2 3.4 3.3 3.3 3.3 3.4 3.4 3.3 3.3 3.3 3.4 3.3 3.4 3.2 3.4 3.4 3.6 3.6 3.4 3.6 3.5 3.6 3.6 3.4 3.5 3.5 3.5 3.5 3.3 3.5 3.5 3.5 3.4 3.4 3.4 3.4 3.4 3.4 3.4 3.5 3.6 3.8
GGMAPQ >= 30 3.3 4.2 4.3 3.7 4.1 4.0 3.5 3.2 3.9 4.3 4.4 4.4 4.5 4.6 4.8 4.8 4.9 5.0 5.0 5.1 5.1 5.0 5.0 5.1 5.0 5.1 5.1 5.1 5.1 5.2 5.2 5.1 5.1 5.1 5.1 5.2 5.2 5.1 5.1 5.2 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.2 5.2 5.2 5.2 5.2 5.1 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.3 5.3 5.3 5.3 5.3 5.3 5.3 5.3 5.3
GGMAPQ >= 20 3.3 4.3 4.6 4.1 4.4 4.2 3.5 3.4 4.2 4.4 4.6 4.4 4.4 4.8 4.8 4.9 4.8 4.9 5.3 5.1 5.2 4.9 5.2 5.5 5.2 5.4 5.3 5.3 5.4 5.5 5.6 5.2 5.3 5.4 5.2 5.5 5.5 5.2 5.3 5.5 5.4 5.2 5.2 5.1 5.3 5.0 5.3 5.2 5.2 5.1 5.2 5.4 5.3 5.4 5.4 5.4 5.3 5.4 5.3 5.4 5.5 5.3 5.5 5.5 5.4 5.4 5.3 5.2 5.3 5.4 5.2 5.1 5.3 5.2
GGMAPQ >= 10 4.3 5.4 5.7 4.7 5.2 5.3 4.1 4.0 5.1 5.2 5.5 5.0 4.9 5.5 5.8 5.5 5.4 5.8 6.5 6.3 6.5 5.6 6.0 6.7 6.0 6.4 6.2 6.4 6.6 6.6 6.5 5.8 5.8 6.1 5.7 6.1 6.0 5.5 5.8 6.2 5.8 5.5 5.6 5.5 5.9 5.3 5.8 5.7 5.7 5.4 5.7 5.9 5.7 5.8 6.0 5.8 5.4 5.7 5.6 5.9 5.9 5.5 5.5 5.8 5.7 5.7 5.4 5.6 5.7 6.2 5.9 5.7 5.7 5.7
GGMAPQ >= 3 4.3 5.4 5.7 4.4 5.1 5.5 4.3 3.9 4.9 5.6 5.3 5.2 5.4 5.5 6.0 5.9 5.7 6.3 7.1 6.8 6.6 5.8 6.8 7.1 6.5 6.7 6.5 7.0 7.2 7.5 6.8 6.2 6.3 6.5 5.8 6.4 6.2 5.5 6.1 6.4 5.9 5.6 5.9 5.3 5.9 5.7 5.9 6.0 5.8 5.7 5.6 6.1 5.8 6.2 6.4 6.3 6.2 6.3 6.3 6.0 6.1 5.7 5.9 6.0 6.0 6.0 5.7 5.8 5.9 6.4 6.2 6.2 6.1 6.0
GGMAPQ < 3 3.8 4.4 4.7 4.3 4.7 4.4 3.6 3.4 4.4 4.6 4.7 4.5 4.7 5.1 5.0 5.0 4.9 5.2 5.5 5.2 5.4 5.0 5.2 5.5 5.2 5.4 5.3 5.3 5.6 5.5 5.4 5.1 5.1 5.3 5.2 5.4 5.3 5.0 5.3 5.3 5.3 5.0 5.1 5.1 5.2 4.9 5.3 5.1 5.2 5.0 5.1 5.2 5.1 5.3 5.2 5.2 5.2 5.2 5.2 5.4 5.3 5.1 5.2 5.3 5.3 5.3 5.1 5.1 5.1 5.3 5.3 5.3 5.5 5.3
GGUnmapped 2.8 3.4 3.9 4.0 4.1 3.6 3.1 3.2 4.1 4.1 4.1 3.9 4.2 4.6 4.5 4.4 4.2 4.5 5.0 4.8 4.8 4.5 4.9 5.3 5.1 5.0 4.8 5.2 5.6 5.4 5.3 5.0 5.5 5.8 5.6 5.6 5.3 5.6 5.9 5.8 5.7 5.4 5.5 5.8 5.6 5.3 5.2 5.6 5.7 5.6 5.5 5.3 5.7 6.0 5.9 5.7 5.5 5.9 6.1 6.0 6.0 5.6 6.1 6.3 6.3 6.1 5.7 6.2 6.5 6.4 6.3 6.1 6.6 7.0
GTMAPQ >= 30 4.8 4.0 4.3 4.2 5.1 4.7 5.5 4.5 4.3 4.8 4.8 4.8 4.8 4.8 4.9 5.0 5.0 5.0 5.0 5.0 5.1 5.0 5.0 5.0 5.1 5.0 5.0 5.1 5.1 5.1 5.2 5.1 5.1 5.1 5.1 5.1 5.2 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.0 5.1 5.1 5.0 5.0 5.0 5.0 5.0 5.0 5.0 5.0 5.0 5.0 5.1 5.0 5.0 5.0 5.0 5.0 5.0 5.0
GTMAPQ >= 20 4.6 4.1 4.4 4.2 4.9 4.6 5.4 4.4 4.4 4.8 4.7 4.7 4.6 4.8 4.8 4.9 4.9 4.8 4.7 4.9 4.8 4.8 4.8 4.9 5.3 4.9 5.2 4.9 5.3 5.1 5.6 5.1 5.2 5.3 5.0 5.1 5.1 5.2 4.9 4.9 5.1 5.0 4.9 5.0 5.0 5.0 4.9 5.0 4.9 5.0 5.0 4.9 5.1 4.8 5.1 5.0 4.9 4.7 4.9 4.6 4.9 4.7 4.8 4.7 4.6 4.6 4.7 4.5 4.8 4.6 5.0 4.8 5.0 4.8
GTMAPQ >= 10 4.8 4.1 4.5 4.4 4.9 4.7 5.8 4.5 4.4 5.0 4.5 5.0 4.8 5.1 4.7 5.0 4.8 4.8 4.7 4.9 4.9 4.9 4.9 4.8 5.3 4.9 5.0 4.7 4.9 5.0 5.4 5.0 5.0 5.0 4.8 5.0 5.1 5.1 4.8 4.7 5.3 4.9 4.8 4.9 4.9 5.0 4.9 5.0 4.9 5.1 4.7 4.7 5.2 4.7 5.1 4.8 4.9 4.4 4.5 4.3 4.5 4.8 4.8 4.7 4.7 4.6 4.6 4.7 5.0 4.7 4.8 4.6 4.8 4.8
GTMAPQ >= 3 5.3 4.3 5.0 4.8 5.1 4.9 5.7 4.9 4.4 5.2 4.8 4.9 5.1 5.2 4.9 5.1 4.8 5.1 4.8 5.1 5.0 5.2 5.0 5.0 5.5 5.1 5.1 5.1 5.0 5.3 5.7 5.2 5.3 5.4 5.1 5.2 5.3 5.3 5.0 5.2 5.8 5.2 5.2 5.3 5.0 5.4 5.3 5.3 5.1 5.2 5.0 4.7 5.4 4.9 5.3 4.8 5.3 4.4 4.6 4.6 4.5 5.0 4.8 5.2 5.1 5.0 4.8 5.2 5.3 5.1 5.2 4.9 5.0 5.0
GTMAPQ < 3 4.8 4.0 4.3 4.2 4.9 4.6 5.5 4.4 4.3 4.8 4.6 4.8 4.7 4.8 4.8 4.9 4.8 4.8 4.8 4.9 4.8 4.9 4.8 4.9 5.2 4.9 4.9 4.8 4.8 4.9 5.1 4.9 4.9 5.0 4.8 4.9 4.9 5.0 4.9 4.7 5.1 4.8 4.8 4.9 4.9 4.9 5.0 4.9 4.9 4.9 4.9 4.8 4.9 4.7 5.0 4.8 4.8 4.6 4.6 4.5 4.8 4.7 4.7 4.7 4.9 4.8 4.9 4.7 5.0 4.8 4.9 4.8 4.9 4.9
GTUnmapped 4.2 3.6 3.9 3.7 4.4 4.1 4.8 4.0 4.1 4.4 4.4 4.4 4.3 4.4 4.5 4.6 4.7 4.3 4.5 4.6 4.6 4.6 4.6 4.5 4.7 4.5 4.7 4.5 4.6 4.5 4.8 4.7 4.6 4.8 4.5 4.6 4.7 4.6 4.7 4.4 4.7 4.5 4.7 4.6 4.7 4.7 4.6 4.7 4.5 4.5 4.7 4.7 4.7 4.5 4.7 4.5 4.7 4.4 4.5 4.2 4.5 4.5 4.3 4.2 4.3 4.3 4.6 4.0 4.3 4.1 4.4 4.3 4.3 4.2
TAMAPQ >= 30 3.9 13.8 7.9 10.0 8.1 7.5 7.0 7.4 8.2 7.5 7.4 7.2 7.1 7.1 7.2 7.0 7.0 6.9 6.9 6.9 6.8 6.8 6.8 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.6 6.7 6.6 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.6 6.6 6.6 6.7 6.6 6.6 6.7 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.5 6.5 6.5 6.5 6.5 6.6 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.6
TAMAPQ >= 20 3.4 12.0 6.7 8.8 6.9 6.5 6.0 6.5 6.9 6.6 6.4 6.4 6.2 6.3 6.5 6.0 6.2 6.0 6.2 6.0 6.1 6.0 5.8 5.8 5.8 5.8 5.7 5.6 5.7 5.6 5.7 5.7 5.6 5.7 5.8 5.7 5.7 5.7 5.7 5.6 5.8 5.6 5.7 5.7 5.6 5.6 5.6 5.6 5.6 5.6 5.7 5.7 5.6 5.7 5.5 5.6 5.6 5.5 5.6 5.5 5.6 5.6 5.6 5.7 5.5 5.6 5.6 5.8 5.9 6.0 6.1 6.1 6.0 6.4
TAMAPQ >= 10 2.7 9.7 5.3 7.2 5.7 5.2 4.7 5.1 5.6 5.3 5.4 5.1 5.0 5.2 5.3 4.8 4.9 4.7 4.9 4.8 4.6 5.0 4.5 4.6 4.6 4.6 4.4 4.6 4.5 4.3 4.5 4.5 4.3 4.4 4.4 4.5 4.6 4.4 4.5 4.5 4.4 4.3 4.5 4.5 4.5 4.7 4.5 4.8 4.6 4.6 4.6 4.6 4.3 4.5 4.3 4.6 4.6 4.5 4.6 4.6 4.7 4.5 4.7 4.6 4.5 4.7 4.6 4.5 4.5 4.4 4.5 4.4 4.3 4.6
TAMAPQ >= 3 3.0 10.9 5.8 8.1 6.1 6.0 5.0 5.8 6.2 5.7 6.2 5.5 5.4 5.8 5.7 5.3 5.4 5.0 5.4 5.4 5.0 5.2 4.9 4.9 4.8 5.0 4.6 4.8 4.7 4.6 4.7 4.8 4.8 4.5 4.7 4.9 5.0 5.0 5.0 4.7 4.9 4.7 4.9 5.0 5.0 5.0 5.0 5.1 5.1 5.3 5.3 5.1 4.8 4.9 4.8 5.1 5.1 5.0 5.5 5.0 5.4 5.0 5.4 5.3 5.5 5.2 5.1 5.1 5.1 5.0 5.1 5.0 4.8 5.1
TAMAPQ < 3 3.1 11.1 5.9 7.9 6.1 5.8 5.3 5.7 6.3 5.8 5.7 5.6 5.4 5.6 5.8 5.3 5.5 5.2 5.6 5.4 5.3 5.4 5.2 5.2 5.1 5.3 5.1 5.1 5.1 5.0 5.0 5.2 5.1 5.0 5.1 5.1 5.2 5.3 5.2 5.2 5.1 5.1 5.1 5.2 5.2 5.2 5.1 5.2 5.1 5.2 5.2 5.3 5.1 5.2 5.1 5.2 5.3 5.0 5.3 5.1 5.1 5.1 5.1 5.2 5.1 5.2 5.2 5.2 5.2 5.2 5.1 5.1 5.0 5.2
TAUnmapped 3.8 13.5 7.2 9.9 7.8 7.1 7.3 7.1 8.2 7.4 7.5 7.2 7.0 7.0 7.1 7.0 6.8 6.8 6.8 6.7 6.7 6.5 6.6 6.4 6.5 6.5 6.3 6.5 6.3 6.4 6.1 6.2 6.3 6.1 6.4 6.0 6.2 6.0 6.1 6.2 5.9 6.2 5.8 6.5 6.0 6.4 6.1 6.1 6.4 6.1 6.2 6.2 6.3 6.3 6.3 6.2 6.2 6.3 6.3 6.5 6.2 6.4 6.4 6.3 6.5 6.4 6.4 6.5 6.4 6.4 6.1 6.1 5.8 5.8
TCMAPQ >= 30 1.6 8.0 5.4 5.5 5.9 5.4 6.2 6.5 6.7 6.1 6.1 5.9 5.9 5.8 5.7 5.7 5.7 5.7 5.7 5.7 5.7 5.7 5.7 5.8 5.7 5.8 5.8 5.7 5.8 5.7 5.7 5.8 5.7 5.8 5.8 5.8 5.7 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.8 5.7 5.8 5.8 5.8 5.8 5.7 5.8 5.8 5.8 5.7 5.8 5.7 5.7 5.7 5.7 5.7 5.7 5.7 5.7 5.7
TCMAPQ >= 20 1.7 8.3 6.3 6.1 6.5 5.6 6.8 7.6 7.6 6.5 6.5 6.3 6.8 6.3 6.3 6.1 6.3 6.5 6.4 6.3 6.1 6.2 6.2 6.5 6.3 6.3 6.0 6.1 6.3 6.1 6.0 6.3 6.0 6.9 6.2 6.3 6.0 6.4 6.5 6.2 6.3 6.4 6.6 6.8 6.5 6.3 6.5 6.5 6.5 6.1 6.3 6.5 6.1 6.4 5.9 6.1 6.4 6.4 6.4 6.1 6.0 6.2 6.0 6.2 6.1 6.1 6.2 6.4 6.0 6.3 5.9 6.4 6.5 6.5
TCMAPQ >= 10 1.7 9.2 7.1 6.7 7.1 5.8 7.5 8.6 8.4 6.7 6.8 6.8 7.5 6.8 6.7 6.6 6.6 7.2 7.1 6.6 6.5 6.7 6.6 6.7 6.6 6.8 6.5 6.5 6.8 6.5 6.5 7.0 6.4 7.8 6.7 7.2 6.5 6.9 7.3 6.9 7.0 7.0 7.2 7.2 7.2 6.6 7.0 7.0 7.0 6.6 7.0 7.4 6.8 7.3 6.4 6.8 7.1 7.1 7.2 6.5 6.7 6.8 6.6 6.9 6.7 6.9 6.7 6.9 6.5 6.7 6.4 6.6 6.7 6.7
TCMAPQ >= 3 1.7 9.4 6.1 6.4 6.9 5.5 7.3 7.2 7.0 6.1 6.1 6.2 6.7 6.1 6.0 5.8 6.2 6.3 6.1 6.3 5.8 5.8 5.9 6.4 5.7 6.2 6.6 6.0 6.5 6.0 5.5 6.4 6.1 6.9 6.1 6.4 6.0 6.3 6.7 6.2 6.4 6.3 7.2 6.4 6.8 6.1 6.4 6.4 6.4 6.2 6.2 6.8 6.2 6.6 6.4 6.3 6.5 6.5 6.6 5.9 6.0 6.0 6.0 6.0 6.0 6.2 5.8 5.6 5.8 5.9 5.6 5.9 5.8 6.1
TCMAPQ < 3 1.7 9.0 7.1 6.7 7.0 6.0 7.3 8.3 8.1 6.8 6.7 6.8 7.3 6.7 6.5 6.4 6.5 6.9 6.7 6.6 6.5 6.7 6.6 6.8 6.7 6.8 6.4 6.5 6.9 6.6 6.7 6.9 6.5 7.4 6.7 7.0 6.4 6.8 7.0 6.6 6.7 7.0 6.9 7.0 6.8 6.5 7.0 7.0 6.9 6.5 6.8 7.1 6.6 6.9 6.6 6.6 7.0 6.9 6.8 6.6 6.6 6.8 6.6 6.8 6.7 6.6 6.6 6.7 6.4 6.9 6.3 6.8 6.7 6.9
TCUnmapped 1.7 7.7 6.6 6.3 5.9 5.4 6.2 7.4 7.2 6.1 5.7 6.0 6.6 6.2 5.5 5.3 5.8 6.6 6.0 5.7 5.1 5.8 6.3 6.1 5.6 5.2 5.6 6.2 5.9 5.6 5.2 5.9 6.3 6.4 5.6 5.5 5.6 6.6 6.2 5.7 5.4 5.9 6.4 6.3 5.7 5.5 5.8 6.6 6.2 5.7 5.4 5.8 6.3 6.1 5.4 5.4 5.7 6.6 6.2 5.7 5.3 5.8 6.5 6.2 5.7 5.5 5.9 6.9 6.2 6.3 5.7 6.6 7.3 7.0
TGMAPQ >= 30 3.0 7.0 5.6 7.7 6.2 6.3 5.2 6.9 7.8 7.2 7.2 7.1 7.2 7.2 7.2 7.2 7.2 7.3 7.3 7.3 7.2 7.3 7.3 7.3 7.2 7.3 7.3 7.3 7.3 7.4 7.3 7.4 7.4 7.3 7.4 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.4 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.2 7.3 7.4 7.3 7.3 7.3 7.3 7.2
TGMAPQ >= 20 3.1 7.3 6.0 8.1 6.4 6.2 5.4 7.2 8.0 7.1 7.1 7.2 7.5 7.4 7.1 7.1 7.3 7.3 7.3 7.4 7.3 7.5 7.6 7.6 7.4 7.8 7.6 7.8 7.5 7.9 7.6 7.4 7.8 7.4 7.6 7.4 7.4 7.5 7.6 7.5 7.2 7.3 7.6 7.5 7.4 7.3 7.4 7.6 7.3 7.3 7.4 7.6 7.6 7.7 7.2 7.5 7.3 7.7 7.3 7.3 7.0 7.4 7.2 7.3 7.1 7.2 6.9 7.2 7.1 7.1 6.9 6.9 7.1 6.8
TGMAPQ >= 10 3.6 8.2 6.7 8.4 7.2 6.7 5.6 8.0 8.6 7.3 7.3 7.4 8.3 8.1 7.3 7.5 8.0 7.9 7.8 7.8 7.7 8.0 8.1 7.8 7.8 7.9 8.0 8.0 7.8 8.4 7.9 7.6 8.2 7.9 8.0 7.7 7.7 7.9 8.2 8.1 7.7 7.8 8.1 8.2 7.9 7.8 7.7 8.2 7.7 7.5 7.9 8.0 8.1 8.4 7.5 7.9 7.6 7.9 7.9 7.3 7.1 7.8 7.6 7.9 7.7 7.6 7.4 7.9 8.2 8.0 7.6 7.5 7.9 7.7
TGMAPQ >= 3 3.3 8.4 6.4 7.9 7.3 7.1 5.5 7.6 8.7 7.0 7.1 7.3 7.9 7.8 7.3 7.3 7.4 7.3 7.8 7.6 7.6 7.8 7.8 7.3 7.6 7.7 8.2 7.7 7.9 8.0 7.9 7.6 7.8 7.9 7.8 7.7 7.7 7.8 8.2 8.3 7.9 8.3 8.0 8.2 8.2 7.7 7.7 8.0 7.6 7.3 7.6 7.7 7.9 8.1 7.6 7.9 7.4 7.6 7.5 7.6 7.2 8.0 7.5 8.3 8.0 7.9 7.7 8.0 9.0 8.2 8.0 7.6 7.8 7.7
TGMAPQ < 3 3.4 7.7 6.2 8.5 6.7 6.6 5.5 7.6 8.3 7.3 7.3 7.5 7.9 7.7 7.3 7.3 7.7 7.7 7.6 7.9 7.7 7.8 7.8 7.8 7.8 7.8 7.8 7.8 7.7 7.9 7.6 7.3 7.9 7.6 7.6 7.5 7.6 7.7 7.7 7.9 7.4 7.6 7.9 7.8 7.7 7.7 7.6 8.0 7.6 7.5 7.7 7.8 7.9 7.9 7.3 7.9 7.4 7.7 7.6 7.5 7.3 7.6 7.5 7.7 7.6 7.8 7.5 7.7 7.8 7.8 7.6 7.5 7.7 7.5
TGUnmapped 2.7 6.4 5.5 7.3 5.5 5.5 4.8 6.6 7.4 6.4 6.2 6.4 6.9 6.9 6.5 6.2 6.7 7.3 7.0 6.9 6.4 6.8 7.3 7.3 6.7 6.8 6.9 7.2 7.0 6.7 6.3 6.7 7.3 6.8 6.5 6.2 6.6 7.0 6.9 6.6 6.2 6.6 6.9 6.9 6.5 6.4 6.6 7.1 6.8 6.6 6.4 6.9 7.1 7.1 6.3 6.5 6.4 7.0 6.5 6.4 5.9 6.3 6.6 6.4 6.2 5.9 6.0 6.4 6.0 5.8 5.3 5.7 6.1 5.6
TTMAPQ >= 30 4.0 11.9 9.5 9.4 8.4 9.8 12.5 14.8 13.7 12.1 11.6 11.3 11.0 10.6 10.2 9.9 9.8 9.7 9.6 9.4 9.5 9.5 9.5 9.5 9.5 9.5 9.4 9.4 9.4 9.3 9.3 9.3 9.3 9.3 9.3 9.3 9.2 9.3 9.3 9.2 9.2 9.3 9.3 9.2 9.2 9.2 9.2 9.2 9.2 9.2 9.2 9.2 9.2 9.2 9.2 9.2 9.2 9.2 9.1 9.1 9.1 9.2 9.2 9.2 9.2 9.1 9.1 9.2 9.2 9.2 9.3 9.3 9.3 9.4
TTMAPQ >= 20 3.9 11.6 9.5 9.1 8.2 9.5 12.4 14.1 12.5 11.3 10.9 11.2 10.6 10.3 9.7 9.6 9.8 9.6 9.3 9.1 9.2 9.3 9.4 9.0 9.0 8.7 8.9 9.1 8.9 8.9 8.9 9.2 9.3 9.0 9.0 8.8 9.1 9.1 8.9 8.6 8.7 8.9 9.2 8.7 8.8 9.0 9.1 9.1 8.8 8.7 9.2 9.1 9.0 8.8 8.7 9.2 9.3 8.9 8.9 8.8 9.0 9.5 9.4 9.4 9.3 9.5 9.9 9.7 9.7 9.5 9.8 10.1 9.8 9.9
TTMAPQ >= 10 3.8 11.2 9.1 8.4 7.6 8.8 12.0 13.2 11.4 10.3 9.9 10.4 9.7 9.1 8.9 8.5 9.0 8.7 8.4 8.1 8.5 8.3 8.3 8.3 8.1 7.8 7.8 8.2 8.0 8.2 8.3 8.4 8.7 8.6 8.5 8.2 8.0 8.4 8.1 7.8 7.7 8.1 8.4 7.8 7.8 8.1 8.2 8.2 7.7 7.8 8.5 8.3 8.1 8.0 7.7 8.2 8.1 8.0 7.8 7.5 7.8 8.3 8.3 8.2 7.9 7.8 8.1 8.0 8.2 8.0 8.1 8.7 8.3 8.6
TTMAPQ >= 3 4.0 11.1 9.2 8.9 8.0 8.9 11.6 12.8 11.8 10.2 10.0 10.0 9.6 9.2 8.9 8.9 8.9 8.9 8.9 8.0 8.2 8.1 8.4 8.3 7.7 8.5 8.2 8.1 7.9 7.7 7.9 8.2 8.4 8.4 8.7 8.2 8.2 8.4 8.3 8.0 8.1 8.6 8.5 8.2 7.9 7.9 7.9 7.8 7.7 7.8 8.3 8.2 8.0 8.2 7.8 8.0 7.8 8.2 7.7 7.6 8.0 8.2 8.5 8.0 7.9 7.7 7.9 8.0 8.1 7.7 7.8 8.2 8.2 8.3
TTMAPQ < 3 3.9 11.8 9.4 8.8 7.9 9.2 12.5 14.1 12.4 11.1 10.6 11.0 10.3 9.7 9.3 9.1 9.5 9.3 9.1 8.9 9.0 9.1 9.3 8.9 8.8 8.6 8.6 9.0 8.7 8.8 8.8 9.2 9.4 9.2 9.2 9.0 9.0 9.2 8.9 8.7 8.9 8.9 9.1 8.8 8.7 9.2 9.0 8.9 8.7 8.8 9.2 9.2 8.9 8.9 8.6 9.1 9.0 8.8 8.7 8.6 8.7 9.2 9.0 8.8 8.4 8.6 8.9 8.7 9.0 8.5 8.9 9.4 9.0 9.2
TTUnmapped 3.9 11.9 9.9 9.6 8.5 10.3 13.4 15.1 13.5 12.2 12.1 12.8 12.2 11.7 11.0 11.2 12.0 11.4 10.8 10.2 10.8 11.6 11.4 10.7 10.1 10.3 11.0 10.6 10.0 9.6 10.1 11.0 10.7 10.3 10.0 10.1 11.0 10.5 10.1 9.5 9.9 10.7 10.3 10.0 9.8 10.3 11.0 10.7 9.9 9.6 9.9 10.7 10.2 9.7 9.5 9.9 10.8 10.5 9.8 9.5 9.8 10.8 10.4 10.0 9.5 9.8 10.7 10.1 9.7 9.1 9.6 10.3 9.6 9.1
Percentage of 2-mers at each position of the read for each alignment quality interval. Numbers shown in bold corresponds to p-values of <= 1e-100.

Error Distribution

MAPQ >= 30 MAPQ >= 20 MAPQ >= 10 MAPQ >= 3 MAPQ < 3

Nucleotide Composition MAPQ >= 30

A C G T N

Nucleotide Composition MAPQ >= 20

A C G T N

Nucleotide Composition MAPQ >= 10

A C G T N

Nucleotide Composition MAPQ >= 3

A C G T N

Nucleotide Composition MAPQ < 3

A C G T N

Nucleotide Composition Unmapped

A C G T N

Length Distribution MAPQ >= 30

Length Distribution MAPQ >= 20

Length Distribution MAPQ >= 10

Length Distribution MAPQ >= 3

Length Distribution MAPQ < 3

Length Distribution Unmapped

Top 5 over-represented 2-mers MAPQ >= 30

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
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TT

AT

CA

TG

AA

TT

AT

CA

AG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

AG

AA

TT

AT

CA

AG

AA

TT

AT

CA

AG

AA

TT

AT

CA

AG

AA

TT

AT

CA

AG

AA

TT

AT

CA

AG

AA

TT

AT

AG

CA

AA

TT

AT

CA

AG

AA

TT

AT

CA

AG

AA

TT

AT

TG

AG

AA

TT

AT

CA

TG

AA

TT

AT

CA

AG

AA

TT

AT

CA

AG

AA

TT

AT

CA

AG

AA

TT

AT

AG

CA

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ >= 20

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

AT

AA

CT

AG

CA

AA

TA

TT

AT

TC

AT

AA

TT

CA

TA

AA

TT

TA

AT

TG

AA

AT

GA

TT

CA

AA

AT

TT

CA

GA

TT

AA

AT

TC

CT

TT

AA

AT

TC

TG

TT

AA

AT

TG

TC

TT

AA

AT

CA

TG

AA

TT

AT

TG

CA

TT

AA

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

TG

GA

AA

TT

AT

TG

AG

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

TG

AT

CA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

TG

CA

AT

AA

TT

AT

CA

AG

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

CA

GA

AA

TT

AT

CA

TG

AA

TT

AT

CA

GA

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

GA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

AG

TT

AA

AT

CA

AG

TT

AA

AT

CA

TG

TT

AA

AT

CA

AG

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ >= 10

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

AT

AA

CT

AG

CA

TT

AA

TA

TC

AT

AT

AA

TT

CA

TC

AA

TT

TG

AT

CA

AA

GA

AT

TT

CA

AA

AT

TT

CA

GA

TT

AT

AA

TC

CT

TT

AA

AT

TC

TG

TT

TG

TC

AA

AT

TT

AA

CA

AT

TG

TT

AA

AT

CA

TG

TT

AA

AT

TG

CA

TT

AA

TG

AT

CA

TT

AA

TG

AT

CA

AA

TT

CA

GA

TG

AA

TT

AT

TG

CA

TT

AA

AT

TG

CA

TT

AA

TG

AT

CA

TT

AA

CA

AT

TG

AA

TT

TG

AT

CA

AA

TT

AT

CA

TG

AA

TT

TG

AT

GA

AA

TT

TG

CA

AT

AA

TT

CA

AT

TG

AA

TT

TG

CA

AT

AA

CA

TG

TT

AT

AA

AT

TG

TT

CA

AA

TT

TG

AT

CA

AA

AT

TT

CA

TG

AA

TG

TT

AT

CA

AA

TT

CA

TG

AT

TT

AA

AT

CA

TG

TT

AA

TG

AT

CA

AA

TT

AT

TG

TC

TT

CA

AA

TG

AT

AA

CA

TT

TG

AT

AA

AT

CA

TT

TG

AA

TT

AT

CA

TG

AA

TG

TT

CA

AT

AA

TG

CA

AT

TT

AA

CA

AT

TT

TG

AA

AT

TT

TG

CA

AA

TT

TG

CA

AT

AA

TG

TT

CA

AT

AA

CA

AT

TG

TT

AA

TT

CA

TG

AT

AA

TT

AT

TG

CA

AA

TG

TT

CA

AT

AA

CA

TT

TG

GA

AA

AT

TT

CA

TG

AA

TT

AT

TG

CA

AA

TT

TG

AT

CA

AA

TT

AT

TG

CA

AA

TG

CA

TT

GA

AA

AT

CA

TT

TG

AA

TT

TG

AT

CA

AA

TT

CA

AT

TG

AA

AT

TT

TG

CA

AA

CA

TG

TT

GA

AA

CA

AT

TT

GA

AA

AT

CA

TT

GA

AA

TT

CA

TG

AT

AA

TT

AT

CA

TG

AA

TT

CA

TG

AT

AA

TT

CA

TG

AT

AA

CA

TT

AT

TG

AA

TT

CA

AT

TG

AA

TT

AT

TG

CA

AA

TG

TT

CA

AT

AA

TG

TT

CA

AT

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

CA

AT

TG

AA

TT

TG

AT

CA

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ >= 3

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

AT

CT

AA

AG

CA

TT

TA

AA

TC

TG

AT

AA

TT

CA

CT

TT

AA

TA

AT

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

TT

AA

AT

TC

CT

TT

AA

AT

CT

CA

TT

AA

TG

CA

TC

TT

AA

CA

AT

TG

TT

AA

CA

AT

TG

AA

TT

AT

CA

TG

TT

AA

TG

CA

AT

TT

AA

TG

CA

AT

AA

TT

CA

TG

AG

AA

TT

CA

TG

AT

TT

AA

CA

TG

AG

TT

AA

AG

CA

TG

TT

AA

CA

TG

GG

AA

TT

CA

TG

AT

AA

CA

TT

TG

AG

AA

TT

TG

CA

AG

TT

AA

AG

CA

TG

CA

AA

TT

TG

AG

AA

CA

TT

TG

CT

TT

CA

AA

TG

AT

AA

TG

TT

CA

AG

AA

CA

TT

TG

AG

AA

CA

TG

TT

GG

AA

TG

CA

TT

GG

CA

AA

TT

TG

AT

AA

CA

TT

TG

AT

AA

TT

CA

TG

AT

AA

TT

TG

CA

AT

AA

TT

CA

TG

AG

AA

TT

CA

TG

AT

AA

CA

TT

TG

AT

AA

TT

TG

AT

CA

AA

TT

TG

CA

AT

AA

TG

CA

TT

AT

AA

CA

TT

TG

AT

AA

TT

TG

CA

AT

TT

AA

TG

CA

TC

AA

TG

TT

CT

CA

CA

AA

TG

TT

AT

AA

TT

CA

TG

AT

AA

CA

TT

TG

CT

AA

TG

CA

TT

AT

AA

CA

TT

TG

AG

AA

CA

TT

AT

TG

AA

TT

CA

TG

AT

AA

TT

TG

CA

AT

AA

TT

CA

TG

CT

AA

TT

TG

CA

AG

AA

TT

CA

TG

AT

AA

TT

CA

TG

AG

AA

CA

TT

AT

TG

AA

TT

CA

TG

AT

AA

CA

TT

TG

CT

AA

CA

TT

TG

AG

AA

TT

CA

AT

TG

AA

TT

TG

CA

AT

AA

TT

CA

TG

AT

AA

TG

TT

CA

AT

AA

TG

TT

CA

AG

AA

CA

TG

TT

AG

AA

CA

TT

TG

AG

AA

TT

TG

CA

AT

AA

TG

TT

CA

AG

AA

TG

CA

TT

AT

AA

TG

CA

TT

AG

AA

TT

CA

TG

AT

AA

TT

TG

CA

AT

AA

TT

CA

TG

AT

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ < 3

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

AT

AA

CT

AG

CA

TT

AA

TA

AT

TC

AT

AA

TT

CA

TC

AA

TT

AT

TG

TA

AA

AT

GA

TT

CA

AA

AT

TT

CA

GA

TT

AT

AA

TC

CT

TT

AA

AT

TC

TG

TT

AA

TG

AT

TC

TT

AA

CA

AT

TG

AA

TT

AT

CA

TG

TT

AA

AT

TG

CA

TT

AA

AT

TG

TC

AA

TT

AT

TG

CA

AA

TT

CA

AT

GA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

AT

TT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

TG

AT

CA

AA

TT

AT

CA

TG

AA

AT

TT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

AT

TT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

CA

AT

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers Unmapped

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

AT

AA

AG

CT

CA

AA

TA

TT

AT

TC

AT

AA

TT

TA

TC

AA

TA

TT

AT

TG

AA

AT

TT

GA

TA

AA

AT

TT

CA

TA

AA

TT

AT

TA

TC

TT

AA

AT

TC

TA

TT

AA

AT

TA

TG

TT

AA

AT

CA

TA

AA

TT

AT

TA

CA

AA

TT

AT

TA

CA

AA

TT

AT

TA

TG

AA

TT

AT

TA

TG

AA

TT

AT

CA

TA

AA

TT

AT

TA

GA

AA

TT

AT

TA

TG

AA

TT

AT

TG

TA

AA

TT

AT

TG

CA

AA

TT

AT

CA

GA

AA

TT

AT

CA

GA

AA

TT

AT

TG

CA

AA

TT

AT

TG

TA

AA

TT

AT

TG

CA

AA

TT

AT

CA

GA

AA

TT

AT

CA

GA

AA

TT

AT

GA

TG

AA

TT

AT

TG

AG

AA

TT

AT

TG

GA

AA

TT

AT

GA

CA

AA

TT

AT

CA

GA

AA

TT

AT

GA

CA

AA

TT

AT

TG

CA

AA

TT

AT

TG

GA

AA

TT

AT

CA

GA

AA

TT

AT

CA

GA

AA

TT

AT

CA

GA

AA

TT

AT

TG

AG

AA

TT

AT

CA

GA

AA

TT

AT

CA

GA

AA

TT

AT

CA

GA

AA

TT

AT

GA

CA

AA

TT

AT

TG

TC

AA

TT

AT

CA

TG

AA

TT

AT

CA

GA

AA

TT

AT

CA

GA

AA

TT

AT

TG

AG

AA

TT

AT

TG

TC

AA

TT

AT

CA

TG

AA

TT

AT

CA

GA

AA

TT

AT

CA

GA

AA

TT

AT

TG

GA

AA

TT

AT

TG

AG

AA

TT

AT

GA

TG

AA

TT

AT

GA

CA

AA

TT

AT

GA

CA

AA

TT

AT

GA

AG

AA

TT

AT

TG

GA

AA

TT

AT

GA

CA

AA

TT

AT

GA

CA

AA

TT

AT

GA

CA

AA

TT

AT

GA

AG

AA

TT

AT

GA

AG

AA

TT

AT

GA

AG

AA

TT

AT

GA

CA

AA

TT

AT

GA

AG

AA

TT

AT

GA

AG

AA

TT

AT

GA

AG

AA

TT

AT

GA

AG

AA

TT

AT

GA

AG

AA

TT

AT

GA

AG

TT

AA

AT

GA

AG

TT

AA

AT

GA

AG

TT

GA

AA

AT

AG

 
Top 5 enriched 2-mers at each positon withion reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 20 over-represented 10-mers

MAPQ >= 30 MAPQ >= 20 MAPQ >= 10 MAPQ >= 3 MAPQ < 3 Unmapped
SeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-value
TAATCCCAGC 315115 0.0e+00 AAAAAAAAAA 90094 0.0e+00 GATTCCATTC 35981 0.0e+00 ATTCCATTCC 5333 0.0e+00 GAATGGAATC 171024 0.0e+00 TTTTTTTTTT 1323811 0.0e+00
GTAATCCCAG 300005 0.0e+00 TTTTTTTTTT 75194 0.0e+00 GAATGGAATC 34488 0.0e+00 CATTCCATTC 5275 0.0e+00 GATTCCATTC 166843 0.0e+00 AAAAAAAAAA 1123184 0.0e+00
GCCTGTAATC 230394 0.0e+00 ATTCCATTCC 60217 0.0e+00 TGATTCCATT 29937 0.0e+00 CCATTCCATT 5273 0.0e+00 TGATTCCATT 146684 0.0e+00 ATTCCATTCC 644420 0.0e+00
TGGGATTACA 228492 0.0e+00 TTCCATTCCA 58310 0.0e+00 AATGGAATCA 29341 0.0e+00 TTCCATTCCA 5246 0.0e+00 AATGGAATCA 144961 0.0e+00 TTCCATTCCA 635341 0.0e+00
GGGATTACAG 218864 0.0e+00 TCCATTCCAT 56153 0.0e+00 ATTCCATTCC 28551 0.0e+00 TCCATTCCAT 5202 0.0e+00 ATTCCATTCG 141063 0.0e+00 CCATTCCATT 620836 0.0e+00
AGGCTGGAGT 197310 0.0e+00 CCATTCCATT 56150 0.0e+00 TTCCATTCCA 27263 0.0e+00 CTCCTGACCT 4978 0.0e+00 CGAATGGAAT 138700 0.0e+00 AATGGAATGG 619469 0.0e+00
AAAAGAAAAA 193338 0.0e+00 GATTCCATTC 53164 0.0e+00 ATTCCATTCG 26520 0.0e+00 GGAGGCTGAG 4426 0.0e+00 ATTCCATTCC 133074 0.0e+00 TCCATTCCAT 617276 0.0e+00
ATCCCAGCAC 192469 0.0e+00 GGAATGGAAT 52889 0.0e+00 ATCGAATGGA 26308 0.0e+00 TCCTGACCTC 4416 0.0e+00 TTCCATTCCA 132680 0.0e+00 TGGAATGGAA 616643 0.0e+00
TCCCAGCACT 189846 0.0e+00 GAATGGAATC 51999 0.0e+00 TCCATTCCAT 26151 0.0e+00 GAGGCTGAGG 4385 0.0e+00 TTCCATTCGA 131920 0.0e+00 GGAATGGAAT 615935 0.0e+00
CCCAGCACTT 183998 0.0e+00 TGGAATGGAA 51714 0.0e+00 TCCATTCGAT 26103 0.0e+00 AATGGAATGG 4205 0.0e+00 TCGAATGGAA 131278 0.0e+00 ATGGAATGGA 614891 0.0e+00
CTGGAGTGCA 182750 0.0e+00 CATTCCATTC 51432 0.0e+00 GGAATGGAAT 25954 0.0e+00 AGGCTGAGGC 4177 0.0e+00 TCCATTCCAT 128624 0.0e+00 CATTCCATTC 609504 0.0e+00
GGCTGGAGTG 181143 0.0e+00 ATGGAATGGA 50748 0.0e+00 CCATTCCATT 25732 0.0e+00 GAATGGAATG 4138 0.0e+00 ATCGAATGGA 126746 0.0e+00 GAATGGAATG 594759 0.0e+00
AAAAATAAAA 176918 0.0e+00 AATGGAATGG 50650 0.0e+00 ATGATTCCAT 25436 0.0e+00 ATGGAATGGA 4102 0.0e+00 CCATTCCATT 126708 0.0e+00 AGATCGGAAG 300121 0.0e+00
GCCTCCCAAA 176564 0.0e+00 TGATTCCATT 49587 0.0e+00 TGGAATGGAA 25268 0.0e+00 GGAATGGAAT 4070 0.0e+00 ATGATTCCAT 122873 0.0e+00 GATCGGAAGA 276455 0.0e+00
CCAGCCTGGG 173482 0.0e+00 AATGGAATCA 49449 0.0e+00 ATGGAATGGA 24915 0.0e+00 TGGAATGGAA 4055 0.0e+00 CATTCCATTC 121861 0.0e+00 ATCGGAAGAG 254728 0.0e+00
AAAGAAAAAA 172988 0.0e+00 GAATGGAATG 46232 0.0e+00 TTCCATTCGA 24866 0.0e+00 GGCTGAGGCA 3908 0.0e+00 TGGAATGGAA 121522 0.0e+00 TCGGAAGAGC 231309 0.0e+00
CCTCCCAAAG 170214 0.0e+00 ATTCCATTCG 44275 0.0e+00 ATGGAATCAT 24579 0.0e+00 CCCAGCTACT 3826 0.0e+00 TCCATTCGAT 121046 0.0e+00 CGGAAGAGCG 213119 0.0e+00
GCCCAGGCTG 169320 0.0e+00 TCCATTCGAT 41317 0.0e+00 AATGGAATGG 24508 0.0e+00 TCCCAGCTAC 3820 0.0e+00 ATGGAATGGA 120555 0.0e+00 TAGATCGGAA 202585 0.0e+00
CTCCCAAAGT 168375 0.0e+00 TTCCATTCGA 41275 0.0e+00 CGAATGGAAT 24299 0.0e+00 GCTGAGGCAG 3766 0.0e+00 ATGGAATCAT 120414 0.0e+00 GGAAGAGCGG 199820 0.0e+00
TCCCAAAGTG 166304 0.0e+00 CGAATGGAAT 41212 0.0e+00 TCGAATGGAA 23471 0.0e+00 CTGAGGCAGG 3691 0.0e+00 GGAATGGAAT 119874 0.0e+00 GAAGAGCGGT 182916 0.0e+00