ezh2_wt_k4

Mapping stats: 92% aligned (97.1M aligned out of 106.0M total) 

Number of alignments in various mapping quality (MAPQ) intervals and number of unmapped sequences. The percentage and number of alignments in each category is given in brackets.

Mean Base Quality

Mean base quality of reads with low and high mapping quality.

Error Profile MAPQ >= 30

Mismatches Insertions Deletions

Error Profile MAPQ >= 20

Mismatches Insertions Deletions

Error Profile MAPQ >= 10

Mismatches Insertions Deletions

Error Profile MAPQ >= 3

Mismatches Insertions Deletions

Error Profile MAPQ < 3

Mismatches Insertions Deletions

Nucleotide Over-representation along read

Mer Q 1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
AAMAPQ >= 30 5.9 5.7 5.4 5.2 5.3 5.2 5.1 4.9 4.9 5.1 5.1 5.0 5.0 4.9 4.9 4.8 4.7 4.7 4.7 4.7 4.7 4.7 4.8 4.8 4.8 4.7 4.7 4.6 4.6 4.6 4.6 4.7 4.7 4.7 4.7 4.7 4.7 4.6 4.6 4.6 4.6 4.6 4.6 4.7 4.7 4.7 4.6 4.6 4.6 4.6 4.5 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.5 4.5 4.5 4.6 4.6 4.6 4.6 4.6 4.6 4.5 4.5 4.5 4.5 4.5 4.6
AAMAPQ >= 20 5.6 5.2 4.9 4.7 4.8 4.7 4.7 4.5 4.5 4.6 4.6 4.6 4.5 4.5 4.4 4.3 4.2 4.2 4.2 4.2 4.2 4.3 4.3 4.3 4.3 4.3 4.2 4.2 4.2 4.1 4.2 4.2 4.2 4.3 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.3 4.2 4.2 4.2 4.2 4.1 4.2 4.2 4.2 4.3 4.3 4.3 4.2 4.3 4.3 4.3 4.3 4.4 4.4 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5
AAMAPQ >= 10 6.5 6.3 5.9 5.6 5.8 5.7 5.7 5.5 5.5 5.7 5.7 5.6 5.5 5.3 5.2 5.2 5.2 5.0 5.1 5.0 5.1 5.1 5.2 5.3 5.3 5.3 5.2 5.1 5.2 5.2 5.1 5.1 5.2 5.3 5.2 5.3 5.5 5.4 5.4 5.3 5.5 5.4 5.1 5.3 5.3 5.5 5.5 5.5 5.5 5.5 5.6 5.7 5.6 5.7 5.8 5.8 5.9 5.8 5.8 5.9 5.9 6.0 6.0 6.1 6.2 6.1 6.1 6.2 6.0 6.0 6.1 6.2 6.2 6.2
AAMAPQ >= 3 6.5 6.4 5.8 5.7 5.7 5.6 5.6 5.6 5.8 5.8 5.9 5.8 5.7 5.5 5.2 5.4 5.5 5.3 5.0 5.0 5.0 5.1 4.9 5.1 5.0 5.1 5.2 5.2 5.1 5.3 5.3 5.3 5.5 5.3 5.5 5.4 5.9 5.6 5.3 5.2 5.5 5.3 5.1 5.3 5.1 5.7 5.8 5.7 5.6 5.7 5.7 5.8 6.0 6.1 6.6 6.4 6.6 6.4 6.1 6.2 6.2 6.5 6.8 6.6 6.5 6.6 6.6 6.8 6.5 6.5 6.7 6.8 6.8 6.6
AAMAPQ < 3 5.8 5.6 5.2 5.0 5.1 5.0 5.0 4.8 4.8 5.0 5.0 5.0 4.9 4.8 4.8 4.8 4.7 4.6 4.6 4.6 4.6 4.7 4.7 4.7 4.7 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.7 4.7 4.7 4.7 4.6 4.6 4.6 4.6 4.7 4.6 4.6 4.7 4.7 4.7 4.6 4.7 4.7 4.7 4.7 4.7 4.7 4.8 4.8 4.8 4.8 4.7 4.7 4.7 4.8 4.8 4.9 4.9 4.9 4.9 4.8 4.8 4.8 4.8 4.8 4.8 4.8
AAUnmapped 5.6 5.3 4.8 4.6 4.7 4.9 36.8 4.6 4.5 4.7 4.6 4.7 4.8 4.5 4.5 4.5 4.5 4.4 4.3 4.4 4.5 4.4 4.5 36.4 4.5 4.4 4.4 4.3 4.3 4.5 4.4 4.4 4.4 4.4 4.4 4.4 4.4 4.3 4.3 4.3 4.3 4.3 4.3 4.3 4.3 4.3 4.4 4.3 4.2 4.3 4.3 4.3 4.2 4.2 4.4 4.4 4.3 4.3 4.3 4.3 4.3 4.3 4.3 4.3 4.4 4.6 35.1 35.9 36.0 35.8 35.2 32.5 29.2 26.5
ACMAPQ >= 30 4.9 4.7 4.6 4.5 4.7 4.6 4.7 4.5 4.4 4.5 4.6 4.5 4.5 4.5 4.5 4.5 4.6 4.5 4.6 4.6 4.5 4.6 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.6 4.5 4.6 4.5 4.6 4.5 4.5 4.6 4.6 4.6 4.5 4.6 4.5 4.6 4.6 4.5 4.6 4.6 4.5 4.6 4.6 4.6 4.6 4.5 4.5 4.5 4.5 4.5 4.5 4.6 4.5 4.6 4.6 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5
ACMAPQ >= 20 4.9 4.6 4.4 4.4 4.6 4.5 4.5 4.3 4.3 4.4 4.4 4.3 4.3 4.3 4.3 4.4 4.4 4.3 4.3 4.3 4.3 4.3 4.3 4.2 4.2 4.3 4.3 4.2 4.2 4.3 4.2 4.3 4.3 4.3 4.3 4.3 4.3 4.3 4.2 4.2 4.3 4.2 4.3 4.3 4.2 4.3 4.3 4.2 4.2 4.2 4.2 4.2 4.2 4.1 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.1 4.1 4.2 4.2 4.1 4.1 4.2 4.1 4.1 4.1 4.2 4.2
ACMAPQ >= 10 4.9 4.7 4.5 4.7 4.9 4.8 4.9 4.5 4.7 4.7 4.8 4.7 4.7 4.7 4.9 4.8 4.9 4.8 4.7 4.8 4.8 4.8 4.6 4.6 4.6 4.7 4.7 4.6 4.7 4.9 4.8 4.9 4.8 4.8 4.6 4.8 4.7 4.8 4.7 4.6 4.8 4.8 4.7 4.6 4.5 4.5 4.7 4.6 4.9 4.9 4.8 4.8 4.7 4.8 4.9 4.8 4.9 5.0 5.0 5.0 5.3 5.1 5.1 5.1 5.0 5.1 4.9 4.9 5.0 4.8 4.8 4.9 4.8 5.0
ACMAPQ >= 3 4.8 4.5 4.5 4.6 4.8 4.7 4.9 4.5 5.0 4.7 5.1 4.9 5.0 4.8 5.1 4.9 4.9 5.0 5.0 4.7 5.2 5.1 4.8 4.9 4.9 4.9 4.8 4.9 4.9 4.9 5.1 5.1 5.1 5.0 4.8 5.0 4.8 4.8 5.1 4.8 5.1 4.8 5.0 4.8 4.7 4.6 4.8 4.6 5.0 4.9 4.7 4.8 4.6 4.5 4.8 4.7 4.7 5.0 5.2 5.0 5.5 5.1 5.1 5.2 5.2 5.0 5.0 5.0 5.2 4.9 4.8 5.0 5.0 5.2
ACMAPQ < 3 4.8 4.7 4.5 4.6 4.7 4.6 4.7 4.5 4.5 4.5 4.7 4.6 4.6 4.6 4.6 4.6 4.7 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.5 4.6 4.7 4.6 4.7 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.7 4.6 4.6 4.7 4.5 4.6 4.6 4.6 4.7 4.7 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.7 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.5 4.5 4.6
ACUnmapped 3.7 3.6 3.3 3.4 3.4 3.4 3.4 3.3 3.2 3.3 3.3 3.2 3.2 3.2 3.2 3.3 3.3 3.3 3.2 3.2 3.3 3.2 3.2 3.1 3.2 3.2 3.1 3.2 3.1 3.2 3.1 3.3 34.8 3.2 3.1 3.2 34.7 3.1 3.0 3.0 3.0 2.9 3.0 3.0 3.0 3.1 3.0 3.0 3.0 3.0 3.0 3.0 3.1 3.0 3.0 3.1 3.1 3.0 3.1 3.1 3.1 3.2 3.1 3.1 3.2 3.1 3.2 3.2 3.3 3.3 3.4 4.4 4.6 4.9
AGMAPQ >= 30 8.3 8.0 7.4 7.6 7.4 7.3 7.0 7.0 6.9 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.2 7.2 7.2 7.1 7.1 7.1 7.1 7.1 7.2 7.2 7.2 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.2 7.2 7.2 7.2 7.2 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.0 7.1
AGMAPQ >= 20 8.3 7.7 7.2 7.4 7.2 7.1 6.8 6.8 6.8 6.9 7.0 6.8 6.9 6.9 7.0 6.9 7.0 6.9 7.0 6.9 6.9 6.9 6.9 6.9 7.0 7.0 6.9 7.0 7.0 7.1 6.9 6.9 6.9 6.8 6.9 6.8 6.8 6.8 6.8 6.8 6.9 6.7 6.7 6.8 6.9 6.9 6.9 6.8 6.9 6.9 6.8 6.7 6.8 6.7 6.7 6.7 6.6 6.5 6.5 6.4 6.4 6.3 6.3 6.3 6.3 6.3 6.2 6.4 6.4 6.3 6.4 6.4 6.3 6.2
AGMAPQ >= 10 8.7 8.1 7.5 7.7 7.6 7.4 7.2 7.4 7.3 7.4 7.5 7.4 7.2 7.4 7.4 7.2 7.2 7.5 7.4 7.4 7.3 7.3 7.5 7.5 7.7 7.6 7.4 7.6 7.6 7.7 7.4 7.5 7.6 7.3 7.2 7.3 7.3 7.1 7.2 7.3 7.1 7.2 7.1 7.2 7.2 7.4 7.4 7.2 7.4 7.5 7.3 7.2 7.3 7.4 7.3 7.1 7.3 7.3 7.1 7.4 7.2 7.1 7.2 7.1 7.1 7.1 7.3 7.3 7.5 7.3 7.3 7.5 7.3 7.3
AGMAPQ >= 3 8.4 7.8 7.1 7.4 7.9 7.3 7.4 7.6 7.5 7.6 7.7 7.5 7.6 7.7 7.8 7.2 7.7 7.9 8.0 7.6 7.8 7.5 8.2 7.9 7.7 7.6 7.2 7.5 7.9 7.9 7.7 8.0 7.7 7.5 7.3 7.3 7.3 7.5 7.5 7.3 7.2 7.2 7.1 7.2 7.1 7.2 7.5 7.7 7.6 7.6 7.5 7.6 7.5 7.8 7.5 7.7 7.3 7.7 7.3 7.2 7.5 7.7 7.4 7.5 7.3 7.6 7.5 7.7 7.6 7.5 8.0 7.7 7.4 7.3
AGMAPQ < 3 8.3 8.0 7.4 7.6 7.5 7.3 7.0 7.1 7.0 7.1 7.2 7.1 7.2 7.2 7.2 7.2 7.3 7.2 7.2 7.1 7.2 7.1 7.3 7.2 7.2 7.1 7.1 7.2 7.3 7.2 7.1 7.1 7.2 7.1 7.2 7.2 7.2 7.2 7.1 7.2 7.2 7.1 7.1 7.2 7.1 7.3 7.3 7.2 7.2 7.2 7.2 7.2 7.2 7.2 7.2 7.2 7.2 7.3 7.2 7.2 7.1 7.1 7.1 7.1 7.2 7.1 7.2 7.2 7.2 7.2 7.2 7.2 7.1 7.1
AGUnmapped 5.2 4.8 4.6 4.8 4.7 4.5 4.6 36.5 4.3 36.7 4.5 4.5 4.4 4.4 4.6 4.5 4.6 36.5 4.5 4.6 36.4 4.5 4.5 4.4 4.4 4.4 4.5 4.6 4.5 4.7 36.2 4.5 4.5 4.4 4.4 4.5 4.4 4.6 36.1 4.4 4.6 4.3 4.4 4.2 4.3 4.3 4.3 4.2 4.3 4.3 4.4 4.2 4.2 4.2 4.1 4.2 4.2 4.2 4.3 4.1 4.1 4.1 4.1 4.2 4.2 4.2 4.3 4.3 4.2 4.3 4.4 5.1 5.4 5.8
ATMAPQ >= 30 3.8 3.3 3.4 3.3 3.3 3.3 3.3 3.2 3.1 3.1 3.1 3.1 3.1 3.1 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 3.0 2.9 2.9 2.9 3.0 2.9 2.9 2.9 3.0 3.0 2.9 2.9 2.9 2.9 2.9 2.9 2.9 3.0 3.0 2.9 3.0 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.9
ATMAPQ >= 20 3.9 3.4 3.4 3.3 3.3 3.3 3.3 3.2 3.0 3.0 3.1 3.1 3.1 3.1 3.0 3.0 3.0 3.0 2.9 3.0 2.9 3.0 3.0 3.0 3.0 3.0 2.9 2.9 2.9 2.9 2.8 2.9 2.9 2.9 2.9 2.9 2.9 2.9 2.8 2.8 2.8 2.8 2.9 2.9 2.8 2.9 2.9 2.8 2.8 2.9 2.8 2.9 2.8 2.8 2.8 2.9 2.8 2.8 2.8 2.8 2.8 2.7 2.7 2.7 2.7 2.8 2.7 2.7 2.7 2.7 2.7 2.8 2.8 2.8
ATMAPQ >= 10 5.1 4.7 4.8 4.6 4.5 4.5 4.7 4.4 4.1 4.2 4.4 4.5 4.3 4.4 4.3 4.3 4.3 4.2 4.1 4.2 4.0 4.1 4.1 4.3 4.2 4.3 4.2 4.2 4.1 4.1 4.1 4.1 4.2 4.1 4.1 4.1 4.0 4.1 4.1 4.1 4.2 4.2 4.2 4.1 4.2 4.4 4.1 4.1 4.1 4.2 4.2 4.2 4.3 4.1 4.2 4.3 4.3 4.3 4.1 4.2 4.1 4.0 4.1 4.2 4.1 4.2 4.1 4.1 4.0 3.9 4.0 4.1 4.2 4.2
ATMAPQ >= 3 5.4 5.3 5.4 5.0 4.9 5.0 4.9 4.8 4.5 4.6 4.6 4.9 4.7 4.5 4.5 4.6 4.6 4.2 4.2 4.1 4.2 4.1 4.3 4.6 4.4 4.4 4.3 4.5 4.2 4.2 4.5 4.4 4.5 4.7 4.4 4.5 4.2 4.6 4.4 4.4 4.5 4.6 4.3 4.3 4.2 4.3 4.2 4.4 4.3 4.5 4.3 4.2 4.2 3.9 4.2 4.5 4.5 4.6 4.4 4.5 4.3 4.2 4.3 4.7 4.5 4.6 4.5 4.6 4.6 4.4 4.3 4.7 4.6 4.6
ATMAPQ < 3 4.2 3.7 3.8 3.7 3.6 3.6 3.7 3.5 3.4 3.3 3.4 3.4 3.4 3.4 3.4 3.4 3.4 3.3 3.3 3.3 3.3 3.3 3.3 3.4 3.3 3.4 3.3 3.3 3.3 3.3 3.3 3.3 3.3 3.3 3.3 3.3 3.3 3.3 3.3 3.3 3.3 3.3 3.3 3.3 3.3 3.3 3.3 3.3 3.2 3.3 3.3 3.3 3.3 3.2 3.3 3.3 3.2 3.3 3.2 3.2 3.2 3.2 3.3 3.3 3.3 3.3 3.2 3.2 3.2 3.2 3.2 3.2 3.2 3.2
ATUnmapped 4.4 36.4 4.0 3.8 3.7 3.8 3.8 3.7 3.5 3.6 3.7 3.6 3.6 3.8 3.5 3.5 3.5 3.4 3.5 3.3 3.4 3.6 3.4 3.6 35.3 3.5 3.4 3.3 3.3 3.3 3.3 3.4 3.4 3.3 3.3 3.2 3.3 3.3 3.2 3.2 3.2 3.4 34.7 3.3 3.3 3.2 3.3 3.3 3.4 34.9 3.4 3.2 3.3 3.2 3.2 3.3 3.3 3.3 3.2 3.2 3.2 3.2 3.4 3.2 3.2 3.3 3.3 3.3 3.3 3.4 3.5 4.1 4.3 4.5
CAMAPQ >= 30 7.1 5.8 6.2 6.2 5.8 6.0 5.8 6.0 6.2 6.1 6.0 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.2 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.2 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.0 6.0 6.0 6.0 6.1 6.1
CAMAPQ >= 20 6.9 5.8 6.2 6.2 5.9 6.0 5.7 6.0 6.2 6.1 6.0 6.1 6.1 6.0 6.1 6.0 6.0 6.0 6.0 6.0 6.0 6.0 5.9 6.0 5.9 5.9 5.9 6.0 6.1 5.9 6.0 6.0 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.8 5.9 5.9 5.9 6.0 5.9 5.8 5.9 5.9 5.8 5.9 5.9 5.8 5.8 5.8 5.7 5.7 5.7 5.7 5.7 5.6 5.6 5.7 5.7 5.6 5.6 5.6 5.7 5.6 5.7 5.6 5.6 5.6 5.6
CAMAPQ >= 10 7.8 6.3 6.9 6.9 6.6 6.8 6.3 6.9 6.9 7.1 7.0 6.9 7.0 7.0 7.0 7.1 7.0 7.1 7.1 7.2 7.1 7.0 7.0 7.1 7.0 6.8 7.0 7.3 7.4 7.2 7.3 7.4 7.1 7.1 7.1 7.2 7.1 7.2 7.0 7.1 6.9 7.0 7.1 6.9 7.2 7.0 7.0 7.2 7.2 7.1 7.0 7.1 7.3 7.3 7.0 7.3 7.1 7.1 7.2 7.3 7.1 7.3 7.2 7.2 7.0 7.2 7.1 7.2 6.9 7.0 7.3 7.1 7.2 7.0
CAMAPQ >= 3 7.9 6.4 7.1 7.4 6.9 7.1 6.9 7.5 7.2 7.5 7.4 7.3 7.1 7.1 6.9 6.9 7.1 6.9 6.7 7.2 6.9 7.2 7.1 7.0 7.0 6.9 7.2 7.5 7.3 7.5 7.6 7.6 7.3 7.3 7.6 7.2 7.6 7.5 7.1 7.2 6.9 7.1 7.1 6.7 6.9 7.2 6.9 7.2 7.1 7.1 7.1 6.9 7.0 7.0 6.9 7.0 6.8 6.9 6.8 7.3 7.0 7.2 7.0 7.1 7.0 7.2 7.3 7.2 7.1 7.1 7.2 7.1 7.2 7.3
CAMAPQ < 3 7.5 6.0 6.6 6.5 6.2 6.4 6.2 6.4 6.6 6.6 6.4 6.5 6.5 6.4 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.4 6.4 6.5 6.5 6.5 6.5 6.6 6.6 6.5 6.5 6.5 6.6 6.5 6.5 6.5 6.5 6.4 6.5 6.6 6.4 6.5 6.4 6.4 6.5 6.5 6.5 6.5 6.4 6.5 6.5 6.5 6.4 6.5 6.4 6.4 6.5 6.5 6.5 6.5 6.5 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4
CAUnmapped 5.0 3.9 4.2 4.3 4.2 4.5 4.1 4.2 4.4 4.3 4.2 4.2 4.1 4.2 4.1 4.2 36.2 4.1 4.2 36.1 4.2 4.1 4.1 4.0 4.1 4.1 4.0 4.0 4.2 4.0 4.0 4.0 3.9 3.9 4.0 3.9 4.2 35.6 4.0 4.0 3.9 3.9 3.9 3.9 4.1 3.9 3.9 3.9 4.0 4.0 4.0 3.9 3.9 3.9 3.9 3.9 3.9 3.9 3.8 3.9 3.9 3.9 3.9 3.9 3.9 4.0 4.1 4.0 4.0 4.0 4.0 4.1 4.8 5.1
CCMAPQ >= 30 10.1 9.6 9.9 9.3 10.0 10.3 10.5 10.7 10.5 10.4 10.6 10.7 10.7 10.8 10.7 10.7 10.9 10.9 10.9 11.0 10.9 10.9 10.9 10.9 10.8 10.8 10.9 10.9 10.8 10.9 11.0 11.0 11.0 10.9 10.9 10.9 10.9 10.9 11.0 10.9 11.0 11.0 10.9 10.9 10.9 10.8 10.9 10.9 10.9 11.0 11.0 11.0 11.0 11.0 11.0 11.0 11.0 10.9 11.0 11.0 11.1 11.1 11.1 11.1 11.0 11.0 11.0 11.0 11.1 11.1 11.2 11.2 11.2 11.2
CCMAPQ >= 20 9.7 9.4 9.6 9.0 9.6 9.9 10.1 10.4 10.2 10.0 10.3 10.4 10.2 10.4 10.3 10.3 10.5 10.5 10.5 10.5 10.5 10.5 10.5 10.4 10.4 10.4 10.5 10.5 10.4 10.4 10.5 10.5 10.5 10.5 10.6 10.5 10.6 10.7 10.7 10.6 10.7 10.8 10.6 10.7 10.7 10.6 10.7 10.7 10.6 10.7 10.8 10.8 10.9 11.0 10.9 11.0 11.1 11.2 11.3 11.5 11.6 11.8 12.0 12.0 12.1 12.3 12.4 12.4 12.5 12.7 12.8 12.9 13.0 13.0
CCMAPQ >= 10 7.9 7.5 7.5 7.0 7.5 7.9 8.1 8.3 8.1 8.3 8.4 8.4 8.1 8.6 8.5 8.5 8.6 9.0 9.0 9.0 8.8 9.0 8.9 8.5 8.6 8.7 9.0 8.9 9.0 9.0 9.0 8.8 9.0 9.0 9.1 8.9 9.1 8.9 9.0 9.1 9.1 9.2 9.2 9.3 9.3 9.4 9.3 9.2 9.3 9.2 9.2 9.1 9.1 8.9 9.0 8.9 8.8 8.9 9.1 9.2 9.0 9.3 9.4 9.4 9.4 9.4 9.6 9.4 9.5 9.5 9.4 9.6 9.7 9.9
CCMAPQ >= 3 6.9 6.7 6.7 6.4 6.5 7.0 7.0 7.4 7.5 7.6 7.5 7.3 7.1 7.7 7.6 7.9 8.0 8.2 8.5 8.4 8.1 8.2 8.2 7.7 8.0 8.4 8.4 8.3 8.2 8.2 8.0 8.0 8.1 8.3 8.7 8.6 8.6 8.4 8.3 8.6 8.8 8.8 9.0 9.4 9.4 9.5 9.4 9.4 9.3 9.2 9.0 8.8 8.7 8.5 8.3 8.2 8.3 8.1 8.1 8.4 8.3 8.4 8.4 8.3 8.2 8.5 8.2 8.3 8.6 8.4 8.9 9.2 9.1 9.2
CCMAPQ < 3 9.6 9.1 9.4 8.8 9.4 9.8 10.0 10.2 10.0 9.9 10.0 10.1 10.1 10.3 10.1 10.2 10.3 10.4 10.4 10.4 10.4 10.4 10.3 10.4 10.3 10.3 10.4 10.4 10.4 10.4 10.5 10.5 10.5 10.4 10.5 10.4 10.4 10.4 10.4 10.4 10.4 10.6 10.4 10.5 10.5 10.5 10.5 10.5 10.6 10.6 10.6 10.6 10.5 10.5 10.5 10.5 10.5 10.5 10.5 10.6 10.6 10.7 10.7 10.7 10.6 10.6 10.6 10.6 10.6 10.7 10.8 10.8 10.9 10.9
CCUnmapped 5.0 4.8 5.0 4.7 5.1 5.1 5.1 5.3 5.2 5.1 5.1 5.2 5.2 5.2 5.2 5.2 5.4 5.3 5.3 5.4 5.3 5.4 5.4 5.5 5.5 5.4 5.6 37.4 5.7 5.7 5.7 5.8 6.0 37.6 6.0 6.0 6.2 6.2 6.3 6.3 6.4 6.4 6.3 6.4 6.4 6.5 6.5 6.7 6.6 6.6 6.8 7.0 38.6 7.1 6.9 7.2 7.1 7.1 7.2 7.3 7.3 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.5 7.5 7.8 7.8
CGMAPQ >= 30 6.3 4.6 5.8 6.2 5.8 6.7 6.1 6.7 6.8 6.7 6.6 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.8 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.8 6.7 6.7 6.7 6.7 6.8 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.7 6.8 6.8 6.7 6.8 6.8 6.8 6.7 6.7 6.8 6.7 6.8 6.8 6.8 6.7 6.8
CGMAPQ >= 20 6.6 4.9 6.3 6.7 6.2 7.3 6.5 7.3 7.3 7.3 7.2 7.4 7.3 7.2 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.4 7.3 7.3 7.3 7.3 7.4 7.3 7.4 7.3 7.4 7.2 7.3 7.3 7.2 7.4 7.3 7.4 7.2 7.3 7.3 7.3 7.4 7.3 7.3 7.3 7.3 7.4 7.4 7.3 7.4 7.4 7.3 7.3 7.3 7.4 7.3 7.3 7.3 7.2 7.1 7.1 7.0 7.0 6.9 7.0 6.9 6.8 6.8 6.9 6.8 6.9
CGMAPQ >= 10 4.0 3.2 3.7 4.2 4.1 4.5 4.2 4.8 4.6 4.4 4.5 4.7 4.5 4.5 4.5 4.7 4.5 4.6 4.6 4.7 4.9 4.7 4.7 4.7 4.5 4.6 4.7 4.7 4.8 4.8 4.7 4.9 4.8 4.7 4.9 4.8 4.8 5.0 4.8 5.1 4.7 4.9 4.9 4.9 5.0 4.8 4.7 4.8 4.7 4.8 4.8 4.8 4.8 4.9 4.6 4.7 4.6 4.7 4.6 4.6 4.7 4.6 4.7 4.7 4.6 4.5 4.7 4.6 4.6 4.6 4.6 4.6 4.4 4.5
CGMAPQ >= 3 3.5 2.7 3.3 3.5 3.5 3.9 3.5 4.2 3.8 3.5 3.5 3.9 3.9 3.9 3.9 4.0 3.9 3.7 3.7 4.1 4.2 4.2 4.1 4.1 3.9 4.0 4.0 3.9 4.1 4.2 3.9 4.1 4.0 3.9 4.1 4.2 3.9 4.1 4.1 4.4 4.1 4.0 4.0 4.2 4.5 4.3 4.0 4.1 3.9 4.2 4.2 4.1 4.3 4.4 4.0 4.1 4.0 4.2 4.0 4.0 4.2 4.0 4.0 3.9 3.7 3.9 3.9 3.9 3.9 4.0 3.9 3.8 3.8 4.1
CGMAPQ < 3 5.6 4.1 5.2 5.6 5.2 6.0 5.5 6.1 6.1 6.0 5.9 6.0 6.0 6.0 6.0 6.0 6.0 6.0 5.9 6.0 6.0 6.0 6.0 6.0 6.0 6.1 6.1 6.0 6.1 6.0 6.0 6.0 6.1 6.0 6.0 6.0 6.0 6.0 6.1 6.1 6.0 6.1 6.1 6.0 6.2 6.0 6.0 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.0 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.2 6.1 6.2 6.1 6.1 6.1 6.1
CGUnmapped 3.7 2.7 3.4 35.5 3.4 4.0 3.5 3.9 4.0 3.9 3.9 36.0 4.0 4.0 4.0 4.0 4.0 4.2 4.1 4.1 4.1 4.1 4.1 4.2 4.0 4.2 4.1 4.3 35.8 4.1 4.2 4.2 4.1 4.2 35.9 4.2 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.1 4.1 35.6 3.9 4.0 4.0 4.0 3.9 4.1 35.7 4.0 3.9 3.9 3.8 3.8 3.9 3.8 3.8 3.8 3.8 3.8 3.8 3.8 3.8 3.8 3.7 3.7 3.7 3.8 4.0
CTMAPQ >= 30 7.8 7.2 7.2 7.2 6.7 7.1 7.1 7.2 7.1 7.0 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.2 7.2 7.2 7.2 7.1 7.1 7.1 7.0 7.1 7.1 7.1 7.2 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.2 7.2 7.2 7.2 7.1 7.1 7.1 7.1 7.1 7.2 7.2 7.2 7.2 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1 7.1
CTMAPQ >= 20 7.5 7.0 7.0 7.0 6.5 6.9 6.9 7.0 6.8 6.8 6.8 7.0 6.9 6.9 7.0 6.8 6.8 6.9 7.0 7.0 7.0 7.0 7.0 6.9 6.9 6.9 6.9 6.9 6.8 6.8 6.8 6.8 6.9 6.9 6.8 6.8 6.8 6.7 6.8 6.6 6.7 6.7 6.8 6.8 6.8 6.7 6.8 6.8 6.7 6.8 6.7 6.8 6.7 6.6 6.6 6.6 6.5 6.6 6.5 6.5 6.5 6.4 6.5 6.4 6.3 6.3 6.3 6.2 6.2 6.1 6.1 6.2 6.2 6.2
CTMAPQ >= 10 7.8 7.2 7.3 7.2 6.7 7.1 7.3 7.4 7.1 7.1 7.1 7.6 7.6 7.2 7.6 7.6 7.4 7.4 7.6 7.4 7.6 7.4 7.4 7.4 7.3 7.3 7.3 7.2 7.0 7.1 7.2 7.2 7.4 7.2 7.4 7.3 7.2 7.3 7.3 7.3 7.3 7.6 7.6 7.6 7.5 7.3 7.7 7.5 7.4 7.7 7.7 7.5 7.5 7.5 7.5 7.4 7.6 7.7 7.5 7.6 7.6 7.7 7.5 7.5 7.4 7.5 7.5 7.5 7.5 7.3 7.4 7.2 7.2 7.2
CTMAPQ >= 3 8.2 7.1 7.4 7.4 7.2 7.2 7.3 7.3 7.0 7.5 7.3 8.0 7.8 7.5 7.8 7.8 7.5 7.8 7.9 7.8 7.7 7.8 7.6 7.6 7.6 7.5 7.5 7.5 7.1 7.1 7.2 7.0 7.3 7.2 7.4 7.3 7.6 7.4 7.5 7.7 7.7 8.0 7.8 8.2 7.7 7.6 7.6 7.6 7.5 7.7 8.2 8.0 8.2 7.6 7.8 7.5 7.9 8.1 7.8 7.9 7.9 7.9 7.8 7.5 7.9 7.6 7.4 7.4 7.5 7.4 6.8 6.9 7.1 7.1
CTMAPQ < 3 7.8 7.3 7.3 7.2 6.8 7.2 7.2 7.4 7.2 7.1 7.2 7.3 7.3 7.2 7.3 7.2 7.2 7.3 7.3 7.3 7.3 7.4 7.3 7.3 7.3 7.3 7.2 7.2 7.1 7.1 7.2 7.2 7.3 7.3 7.3 7.3 7.3 7.2 7.2 7.2 7.2 7.3 7.3 7.3 7.2 7.2 7.3 7.2 7.3 7.3 7.4 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.2 7.3 7.3 7.3 7.3 7.2 7.2 7.2 7.2 7.2 7.2 7.2 7.1 7.2 7.1 7.1
CTUnmapped 4.8 4.2 4.3 4.3 4.0 4.3 4.3 4.3 4.2 4.2 4.1 4.2 4.1 4.1 4.1 4.1 4.0 4.0 4.0 4.0 4.0 4.0 4.0 3.9 3.9 3.9 3.9 3.9 3.8 3.8 3.8 3.8 3.8 3.8 3.8 3.7 3.7 3.7 3.7 3.7 3.7 3.7 3.8 3.9 35.1 3.7 3.6 3.6 3.6 3.6 3.6 3.6 3.6 3.6 3.6 3.7 35.2 3.7 3.7 35.2 3.6 3.7 35.1 3.6 3.6 3.4 3.5 3.5 3.5 3.4 3.5 3.5 3.7 3.7
GAMAPQ >= 30 6.3 6.4 6.3 6.3 6.3 6.1 6.1 5.7 6.0 6.1 6.0 5.9 6.0 5.9 5.9 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.1 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.1 6.0 6.1 6.1 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0
GAMAPQ >= 20 6.2 6.4 6.2 6.3 6.3 6.0 6.0 5.6 6.0 6.0 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 5.9 6.0 5.9 6.0 6.0 5.9 6.0 5.9 6.0 5.9 5.9 6.0 5.9 5.9 5.9 5.9 5.9 5.8 5.8 5.9 5.9 5.8 6.0 5.9 5.9 6.0 5.8 5.9 5.9 5.9 5.8 5.8 5.7 5.8 5.8 5.8 5.7 5.6 5.6 5.6 5.5 5.5 5.5 5.5 5.5 5.5 5.5 5.5 5.5 5.5 5.5 5.5 5.6 5.6
GAMAPQ >= 10 6.4 6.4 6.4 6.5 6.4 6.6 6.4 5.8 6.4 6.3 6.2 6.0 6.1 6.1 6.0 6.0 6.1 6.0 6.1 5.8 6.0 6.2 6.3 6.3 6.5 6.2 6.4 6.3 6.4 6.1 6.3 6.4 6.3 6.1 6.3 6.2 6.0 6.2 6.2 6.3 6.4 6.0 6.2 6.2 6.4 6.3 6.2 6.4 6.5 6.2 6.1 6.2 6.2 6.4 6.4 6.5 6.6 6.3 6.5 6.3 6.2 6.3 6.4 6.3 6.3 6.1 6.3 6.2 6.1 6.2 6.4 6.3 6.4 6.1
GAMAPQ >= 3 6.0 6.0 5.7 5.9 5.7 6.0 6.2 5.8 6.0 6.2 6.0 6.2 6.0 6.0 6.2 6.4 6.3 6.3 6.2 6.3 6.4 6.5 6.9 6.5 6.6 6.2 6.7 6.4 6.6 6.4 6.8 6.8 6.6 6.4 6.2 6.3 6.2 6.3 6.3 6.6 6.5 6.0 6.5 5.9 6.5 6.4 6.8 6.6 6.8 6.3 6.1 6.4 6.2 6.7 6.9 6.5 6.9 6.3 6.4 6.5 6.5 6.5 6.6 6.4 6.7 6.1 6.6 6.2 6.3 6.6 6.7 6.6 6.5 6.2
GAMAPQ < 3 6.3 6.4 6.3 6.3 6.3 6.2 6.2 5.7 6.0 6.2 6.1 6.1 6.0 6.0 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.2 6.1 6.1 6.1 6.1 6.1 6.1 6.2 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.2 6.2 6.2 6.1 6.2 6.2 6.3 6.3 6.2 6.2 6.3 6.2 6.2 6.2 6.2 6.2 6.3 6.2 6.3 6.2 6.2 6.2 6.2 6.1 6.2 6.2 6.2 6.1 6.2 6.2 6.1 6.1 6.1 6.1 6.1 6.1
GAUnmapped 36.9 4.3 4.2 4.3 4.4 36.2 4.2 3.9 36.2 4.2 4.2 4.3 4.1 4.2 4.1 4.2 4.1 4.1 4.2 4.2 4.2 4.3 36.1 4.2 4.1 4.2 4.2 4.2 4.5 35.8 4.4 35.9 4.2 4.1 4.3 35.8 4.2 4.0 4.0 4.2 4.2 35.5 4.1 3.9 4.0 4.0 3.9 3.9 4.0 4.0 4.0 4.0 3.9 4.0 4.0 4.1 4.0 4.0 4.0 4.0 4.1 4.2 4.1 4.1 4.3 34.6 4.6 4.2 4.2 4.1 4.2 4.2 4.8 5.1
GCMAPQ >= 30 8.1 8.6 8.4 8.5 9.2 8.7 9.4 9.1 9.2 9.4 9.4 9.4 9.3 9.3 9.3 9.3 9.4 9.4 9.4 9.4 9.3 9.4 9.3 9.3 9.3 9.3 9.4 9.4 9.4 9.5 9.4 9.4 9.3 9.3 9.3 9.3 9.4 9.4 9.4 9.4 9.4 9.4 9.4 9.4 9.3 9.4 9.4 9.4 9.4 9.5 9.4 9.4 9.4 9.4 9.4 9.4 9.4 9.4 9.4 9.5 9.5 9.5 9.4 9.4 9.4 9.4 9.4 9.4 9.4 9.5 9.5 9.4 9.4 9.4
GCMAPQ >= 20 8.5 9.0 8.9 9.0 9.8 9.1 10.0 9.6 9.8 9.9 10.1 10.0 10.0 10.0 9.9 10.0 10.2 10.1 10.1 10.1 10.0 10.1 10.1 10.0 10.0 10.0 10.0 10.1 10.0 10.2 10.1 10.1 10.0 10.0 9.9 10.0 10.0 10.0 10.0 9.9 10.0 9.9 10.0 10.0 9.9 9.9 10.0 10.0 10.1 10.0 10.1 10.1 10.0 9.9 10.0 9.9 10.0 9.8 9.9 9.9 9.8 9.8 9.6 9.5 9.5 9.5 9.4 9.3 9.4 9.3 9.3 9.3 9.3 9.2
GCMAPQ >= 10 7.1 7.1 7.0 6.9 7.5 7.2 7.6 7.3 7.5 7.6 7.8 7.7 7.8 7.8 7.8 7.8 7.9 7.8 7.9 8.2 8.0 8.2 7.9 7.9 7.8 8.1 7.9 8.1 8.0 8.2 8.4 8.4 8.1 8.3 8.1 8.1 8.2 8.2 8.4 8.2 8.3 8.3 8.2 8.3 8.1 8.3 8.1 8.1 8.0 8.1 8.0 8.2 8.0 7.8 8.1 7.9 7.9 7.8 8.1 8.0 8.2 8.1 7.9 7.8 7.8 7.9 7.9 8.0 7.8 8.1 8.1 7.9 8.0 7.8
GCMAPQ >= 3 6.9 6.8 7.0 6.7 7.0 6.8 7.6 6.9 7.0 6.9 6.9 7.0 6.9 7.0 7.0 6.9 6.8 7.0 7.0 7.1 7.4 7.4 7.1 7.4 7.2 7.0 6.8 6.7 6.9 7.2 7.4 7.4 7.2 7.6 7.3 7.3 7.4 7.3 7.6 7.7 7.3 7.5 7.3 7.3 7.4 7.3 6.9 7.0 7.1 7.4 7.3 7.6 7.3 7.0 7.4 7.4 7.4 6.9 7.4 7.5 7.3 7.5 7.4 7.1 7.4 7.2 7.5 7.9 7.4 7.7 7.8 7.6 7.7 7.7
GCMAPQ < 3 8.0 8.2 8.1 8.2 8.8 8.4 9.0 8.7 8.7 8.9 8.9 8.9 8.9 8.8 8.9 8.9 8.9 8.9 9.0 9.0 8.9 8.9 8.8 8.8 8.8 8.9 8.9 8.9 8.9 9.0 8.9 9.0 8.9 8.9 8.9 8.9 8.9 8.9 8.9 8.9 9.0 8.9 8.9 8.9 8.8 8.9 8.9 8.9 9.0 9.0 9.0 9.0 8.9 8.9 8.9 8.9 8.9 8.9 9.0 9.1 9.0 9.1 9.0 9.0 8.9 9.0 9.0 9.0 9.1 9.1 9.1 9.1 9.0 9.1
GCUnmapped 4.3 4.5 4.5 4.6 5.1 4.7 5.1 5.2 5.1 5.2 37.2 5.2 5.2 5.2 5.2 5.4 5.2 5.3 37.3 5.4 5.3 5.3 5.2 5.3 5.2 5.4 37.2 5.3 5.2 5.3 5.3 5.2 5.1 5.2 5.1 5.1 5.2 5.0 5.2 5.1 5.1 5.1 5.1 5.1 5.0 5.1 5.0 5.0 5.1 5.1 5.3 36.7 5.1 4.9 5.1 5.0 4.8 4.8 4.9 4.8 4.9 36.3 4.8 4.6 4.6 4.9 4.6 4.5 4.6 4.5 4.5 4.6 4.6 4.8
GGMAPQ >= 30 11.4 11.1 10.7 10.4 10.5 10.5 10.4 10.0 10.4 10.5 10.4 10.4 10.4 10.5 10.6 10.7 10.8 10.8 10.8 10.8 10.8 10.7 10.6 10.7 10.7 10.7 10.8 10.8 10.9 10.9 10.8 10.8 10.8 10.8 10.8 10.9 10.9 10.9 11.0 11.0 11.0 11.0 10.9 10.8 10.8 10.9 10.9 11.0 11.0 10.9 11.0 10.9 10.9 10.9 10.9 10.9 11.0 11.0 11.0 11.1 11.1 11.1 11.1 11.1 11.1 11.1 11.2 11.2 11.3 11.3 11.3 11.4 11.4 11.4
GGMAPQ >= 20 11.8 11.6 11.1 10.9 10.9 11.1 11.1 10.6 11.1 11.2 11.1 11.0 11.1 11.2 11.3 11.5 11.5 11.6 11.7 11.7 11.8 11.7 11.7 12.0 11.9 12.0 12.1 12.1 12.3 12.3 12.4 12.4 12.5 12.6 12.6 12.8 12.9 13.0 13.2 13.2 13.3 13.4 13.0 12.8 13.0 13.1 13.3 13.3 13.1 13.2 13.4 13.4 13.4 13.6 13.7 13.7 13.9 14.0 14.2 14.3 14.6 14.6 14.7 14.8 14.8 14.9 14.9 14.9 15.0 15.1 15.0 14.9 14.8 14.6
GGMAPQ >= 10 9.4 9.1 9.0 8.6 9.0 9.2 8.6 8.4 9.0 9.2 9.0 8.7 8.7 8.6 8.8 8.6 8.8 8.8 9.0 9.2 9.3 9.1 9.2 9.4 9.2 9.3 9.2 9.3 9.4 9.7 9.7 9.2 9.3 9.5 9.2 9.3 9.4 9.4 9.4 9.4 9.5 9.2 9.0 8.9 9.1 8.9 9.1 8.9 8.9 8.9 9.2 9.1 8.9 9.0 9.3 9.1 8.8 8.9 8.9 8.9 8.8 8.7 8.6 8.6 8.7 8.8 8.6 8.6 8.8 9.0 9.0 9.0 9.0 9.0
GGMAPQ >= 3 9.4 8.8 8.6 7.9 8.1 8.8 8.0 7.5 8.3 8.3 8.2 7.4 7.6 8.0 8.2 8.0 8.0 8.3 8.6 8.8 8.8 8.8 8.8 9.2 9.2 9.3 9.1 9.1 9.2 9.7 9.7 9.1 9.3 8.8 8.6 8.7 8.7 8.6 8.7 8.5 8.5 8.6 8.1 8.2 8.4 8.6 8.5 8.4 8.2 8.3 8.5 8.4 8.4 8.5 8.7 8.5 8.1 8.2 8.5 8.3 8.4 8.0 7.9 8.1 8.1 8.0 8.0 8.0 8.3 8.4 8.3 8.5 8.2 8.3
GGMAPQ < 3 10.9 10.5 10.2 9.9 10.1 10.2 9.9 9.5 10.0 10.1 10.0 9.9 10.0 10.1 10.1 10.2 10.3 10.4 10.5 10.4 10.4 10.2 10.2 10.4 10.4 10.4 10.4 10.5 10.5 10.6 10.6 10.4 10.4 10.4 10.4 10.4 10.6 10.5 10.6 10.6 10.6 10.6 10.4 10.3 10.4 10.4 10.5 10.5 10.4 10.4 10.5 10.4 10.4 10.5 10.4 10.4 10.4 10.5 10.6 10.6 10.6 10.5 10.5 10.5 10.5 10.6 10.6 10.7 10.7 10.8 10.8 10.8 10.9 10.8
GGUnmapped 6.1 5.9 5.6 5.6 37.6 5.7 5.7 5.5 5.8 5.9 6.0 5.9 38.1 6.1 6.1 6.2 6.3 6.4 6.6 6.6 6.8 38.7 6.9 7.0 7.1 7.1 7.2 7.2 7.4 7.5 7.5 7.6 7.8 7.8 7.9 8.1 8.0 8.1 8.3 9.0 9.0 8.7 8.2 8.2 8.3 8.3 8.4 8.4 8.2 8.3 8.4 8.4 8.4 8.5 8.7 8.6 8.6 8.7 8.7 8.8 8.9 8.8 8.8 8.8 8.8 9.2 8.7 8.7 8.8 8.7 8.7 8.7 8.8 8.9
GTMAPQ >= 30 5.2 4.4 4.4 4.7 4.6 4.6 4.8 4.6 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.6 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.6 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.4 4.5 4.5 4.4 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.4 4.5 4.4 4.4 4.4 4.4 4.4 4.4 4.4 4.4 4.4 4.4 4.4 4.4 4.4 4.4 4.4 4.4 4.4 4.4 4.4
GTMAPQ >= 20 5.2 4.5 4.4 4.8 4.6 4.6 4.9 4.6 4.6 4.6 4.5 4.5 4.4 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.4 4.3 4.5 4.4 4.4 4.5 4.4 4.5 4.4 4.4 4.4 4.4 4.3 4.3 4.3 4.3 4.3 4.3 4.3 4.2 4.4 4.3 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.2 4.1 4.2 4.1 4.1 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 3.9 3.9 4.0 3.9 3.9 3.9 4.0 3.9
GTMAPQ >= 10 5.8 5.0 5.1 5.4 5.1 5.2 5.5 5.3 5.3 5.2 5.1 5.4 5.0 5.2 5.1 5.1 5.1 5.1 5.0 5.1 5.1 5.1 5.0 5.0 5.1 5.0 5.0 4.8 4.8 4.9 4.7 4.8 4.9 4.9 4.9 4.8 4.9 4.9 4.7 4.7 4.9 4.8 4.8 4.8 4.6 4.7 4.7 4.8 4.6 4.7 4.6 4.6 4.8 4.6 4.6 4.7 4.6 4.6 4.4 4.5 4.4 4.6 4.5 4.7 4.6 4.6 4.5 4.6 4.8 4.7 4.6 4.5 4.7 4.6
GTMAPQ >= 3 6.3 5.4 5.3 5.8 5.5 5.5 5.7 5.8 5.7 5.6 5.3 5.7 5.4 5.5 5.5 5.4 5.5 5.3 5.2 5.1 5.1 5.1 5.0 5.1 5.4 5.4 5.4 5.5 5.3 5.4 5.2 5.2 5.4 5.4 5.1 5.3 5.1 5.2 5.1 5.2 5.3 5.1 5.4 5.1 4.9 5.3 5.0 5.2 5.2 5.0 4.9 4.9 5.1 5.1 5.1 5.1 5.1 4.9 4.8 4.7 4.6 5.0 5.0 4.9 4.9 5.0 4.8 4.7 5.0 4.8 4.9 5.0 4.8 4.6
GTMAPQ < 3 5.4 4.6 4.6 4.9 4.8 4.7 5.0 4.8 4.7 4.7 4.7 4.7 4.6 4.7 4.7 4.7 4.6 4.7 4.6 4.7 4.7 4.7 4.6 4.6 4.7 4.7 4.7 4.7 4.6 4.7 4.7 4.7 4.7 4.7 4.7 4.6 4.6 4.6 4.6 4.6 4.6 4.6 4.7 4.6 4.5 4.6 4.5 4.6 4.6 4.6 4.5 4.6 4.5 4.6 4.6 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.4 4.5 4.4 4.4 4.5 4.5 4.4 4.4 4.5 4.4
GTUnmapped 4.2 3.3 3.3 3.5 3.3 3.4 3.4 3.4 3.3 3.4 3.4 3.3 3.4 35.4 3.4 3.3 3.3 3.3 3.3 3.3 3.3 3.3 3.2 3.2 3.3 3.2 3.2 3.3 3.2 3.3 3.2 3.2 3.2 3.3 3.2 3.1 3.2 3.2 3.3 34.1 3.3 3.2 3.4 3.2 3.2 3.2 3.3 34.7 3.2 3.1 3.1 3.1 3.0 3.2 34.5 3.1 3.0 3.0 2.9 3.1 3.0 3.0 3.1 3.0 3.0 3.3 3.0 3.1 3.0 3.0 3.0 3.1 3.1 3.2
TAMAPQ >= 30 2.4 2.9 2.8 3.0 2.9 2.7 2.7 2.7 2.7 2.6 2.6 2.6 2.6 2.6 2.6 2.6 2.6 2.6 2.6 2.6 2.6 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.6 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.5 2.4 2.4 2.4 2.4 2.4 2.5 2.5 2.4 2.5 2.5 2.4 2.4 2.4 2.4 2.4 2.4
TAMAPQ >= 20 2.2 2.7 2.6 2.7 2.7 2.4 2.4 2.4 2.4 2.4 2.3 2.3 2.3 2.3 2.4 2.4 2.3 2.3 2.3 2.3 2.3 2.3 2.3 2.2 2.2 2.3 2.2 2.2 2.3 2.2 2.3 2.2 2.2 2.2 2.2 2.2 2.2 2.2 2.2 2.2 2.1 2.1 2.2 2.1 2.2 2.2 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.0 2.1 2.0 2.1 2.1 2.1 2.1 2.1 2.1 2.1 2.1
TAMAPQ >= 10 3.1 3.7 3.5 3.8 3.6 3.4 3.3 3.3 3.2 3.3 3.2 3.2 3.3 3.3 3.3 3.3 3.1 3.1 3.0 3.1 3.1 3.2 3.2 3.1 3.1 3.2 2.9 3.0 2.9 2.9 2.9 2.9 2.8 2.8 2.8 2.8 2.7 2.7 2.8 2.8 2.8 2.8 2.8 2.8 2.9 2.8 2.8 2.9 3.0 3.0 3.1 2.9 2.9 2.9 2.8 2.8 2.9 2.8 3.0 3.0 3.0 2.9 3.0 2.8 3.0 3.0 3.0 2.9 3.0 3.0 3.0 3.0 2.9 3.0
TAMAPQ >= 3 3.5 4.0 4.0 4.3 4.3 4.0 3.8 3.9 3.8 3.7 3.8 3.8 3.8 4.0 3.7 4.0 3.5 3.7 3.5 3.6 3.5 3.6 3.5 3.4 3.4 3.4 3.0 3.0 3.4 3.2 3.3 3.1 3.0 3.0 3.0 3.2 2.8 2.9 2.9 3.2 3.0 3.0 3.0 3.2 3.2 3.1 3.0 3.0 3.1 3.2 3.6 3.3 3.1 3.3 3.1 3.1 3.3 3.6 3.6 3.6 3.7 3.5 3.7 3.4 3.5 3.7 3.5 3.8 3.4 3.6 3.5 3.3 3.3 3.3
TAMAPQ < 3 2.4 2.9 2.8 3.0 2.9 2.7 2.6 2.6 2.6 2.6 2.5 2.6 2.6 2.6 2.6 2.6 2.5 2.5 2.5 2.5 2.5 2.6 2.5 2.5 2.5 2.5 2.4 2.5 2.5 2.4 2.4 2.4 2.5 2.4 2.4 2.4 2.4 2.4 2.4 2.5 2.4 2.4 2.4 2.4 2.5 2.4 2.4 2.4 2.4 2.4 2.4 2.5 2.4 2.4 2.4 2.4 2.4 2.4 2.4 2.4 2.4 2.4 2.4 2.4 2.4 2.4 2.4 2.4 2.4 2.4 2.4 2.4 2.4 2.4
TAUnmapped 2.6 3.3 3.4 3.3 3.3 3.0 3.0 3.0 3.0 2.9 2.9 3.0 2.9 2.9 2.9 2.9 2.9 2.8 2.8 2.8 2.8 2.8 2.8 2.7 2.8 2.8 2.7 2.7 2.8 2.7 2.7 2.7 2.7 2.7 2.7 2.6 2.6 2.6 2.6 2.6 2.6 2.6 2.6 2.7 2.6 2.7 2.6 2.8 34.2 2.7 2.6 2.6 2.6 2.6 2.6 2.6 2.6 2.6 2.6 2.5 2.5 2.6 2.6 2.7 2.7 2.7 2.9 2.7 2.7 2.6 2.7 2.7 3.1 3.3
TCMAPQ >= 30 4.1 6.1 6.1 5.8 6.2 5.9 6.2 6.3 6.1 6.1 6.1 6.1 6.1 6.1 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.1 6.1 6.1 6.1 6.1 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.1 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.1 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.1 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0
TCMAPQ >= 20 3.9 6.0 6.0 5.8 6.1 5.7 6.1 6.2 6.0 5.9 6.0 5.9 5.9 5.9 5.9 5.9 5.8 5.8 5.9 5.9 5.9 5.8 5.8 5.8 5.9 5.9 5.9 5.8 5.8 5.7 5.7 5.7 5.7 5.7 5.8 5.7 5.7 5.7 5.7 5.6 5.7 5.7 5.7 5.8 5.7 5.7 5.7 5.7 5.7 5.7 5.8 5.7 5.7 5.6 5.6 5.6 5.6 5.6 5.6 5.5 5.5 5.4 5.4 5.4 5.4 5.3 5.4 5.3 5.3 5.3 5.3 5.3 5.3 5.4
TCMAPQ >= 10 4.3 6.1 6.3 6.2 6.6 6.0 6.7 6.7 6.6 6.3 6.5 6.4 6.8 6.5 6.6 6.5 6.7 6.6 6.7 6.5 6.4 6.2 6.2 6.4 6.5 6.4 6.5 6.5 6.4 6.2 6.1 6.2 6.2 6.5 6.4 6.4 6.5 6.2 6.4 6.2 6.4 6.5 6.6 6.7 6.7 6.5 6.6 6.7 6.6 6.6 6.5 6.6 6.7 6.6 6.4 6.5 6.7 6.7 6.6 6.3 6.5 6.2 6.2 6.2 6.4 6.4 6.4 6.2 6.1 6.2 6.1 6.1 6.1 6.2
TCMAPQ >= 3 4.3 6.6 6.5 6.5 6.9 6.1 6.9 6.6 6.7 6.5 7.0 6.6 7.2 6.6 6.9 6.7 7.0 6.7 7.1 6.8 6.8 6.3 6.4 6.6 6.7 6.8 7.1 6.8 7.0 6.4 6.2 6.2 6.2 6.8 6.4 6.9 6.7 6.4 6.9 6.5 6.7 6.8 7.3 7.0 7.1 6.6 7.1 6.8 6.8 7.0 6.8 6.9 6.8 6.9 6.3 6.7 6.9 6.7 6.8 6.5 6.4 6.2 5.9 6.1 6.3 6.2 6.1 6.0 5.6 5.8 5.4 5.5 5.8 5.8
TCMAPQ < 3 4.2 6.3 6.3 6.1 6.4 6.1 6.5 6.5 6.4 6.2 6.3 6.4 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.2 6.3 6.3 6.3 6.4 6.3 6.3 6.3 6.2 6.2 6.2 6.2 6.3 6.3 6.3 6.3 6.2 6.2 6.2 6.3 6.3 6.3 6.4 6.3 6.2 6.3 6.3 6.2 6.3 6.3 6.3 6.3 6.3 6.2 6.3 6.3 6.3 6.3 6.2 6.2 6.2 6.1 6.1 6.2 6.2 6.2 6.1 6.1 6.1 6.1 6.0 6.1 6.1
TCUnmapped 2.4 4.0 36.0 4.0 4.2 3.8 4.0 4.0 4.0 3.8 3.8 3.8 3.9 3.8 3.8 35.7 3.7 3.8 3.7 3.7 3.7 3.7 3.8 3.7 3.6 3.6 3.6 3.7 3.6 3.6 3.6 3.6 3.6 3.6 3.6 3.7 3.5 3.6 3.6 3.5 3.6 3.5 3.8 35.2 3.8 34.9 3.6 3.6 3.6 3.5 3.5 3.5 3.5 3.4 3.6 34.8 3.5 3.6 35.1 3.4 3.4 3.4 3.4 3.5 3.4 3.5 3.4 3.4 3.4 3.4 3.4 3.5 3.6 3.7
TGMAPQ >= 30 4.5 6.2 6.1 6.4 6.2 6.1 5.9 6.2 6.3 6.0 6.0 6.0 6.0 6.0 6.1 6.1 6.1 6.1 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.1 6.1 6.1 6.1 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.1 6.1 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.1 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 5.9 5.9 5.9
TGMAPQ >= 20 4.7 6.5 6.5 6.6 6.5 6.4 6.2 6.6 6.5 6.3 6.2 6.2 6.2 6.2 6.3 6.4 6.3 6.3 6.3 6.3 6.2 6.2 6.3 6.2 6.2 6.2 6.3 6.2 6.3 6.2 6.2 6.1 6.2 6.1 6.2 6.2 6.1 6.1 6.1 6.0 5.9 5.9 5.9 6.0 6.0 6.0 6.0 6.0 6.0 5.9 6.0 5.8 5.9 5.9 5.8 5.9 5.8 5.8 5.8 5.7 5.7 5.6 5.6 5.7 5.6 5.6 5.5 5.5 5.5 5.5 5.4 5.5 5.4 5.4
TGMAPQ >= 10 5.5 7.2 7.2 7.5 7.4 7.1 6.8 7.6 7.4 7.1 6.8 6.9 7.3 7.2 6.9 7.4 7.3 7.2 7.2 7.2 7.1 7.3 7.2 7.1 7.2 7.1 7.2 7.1 7.0 6.9 7.1 6.9 7.1 7.1 7.1 7.1 7.2 7.2 7.3 7.3 6.9 7.0 7.2 7.2 7.1 7.0 7.0 7.1 6.9 6.7 7.0 6.9 6.9 7.1 6.9 7.0 6.9 7.0 7.0 6.8 6.8 6.9 6.9 7.0 6.9 6.9 6.8 6.9 7.0 7.1 6.9 6.9 6.8 6.8
TGMAPQ >= 3 5.6 7.2 7.3 7.5 7.7 7.5 7.2 7.5 7.4 6.9 6.9 7.0 7.5 7.3 6.9 7.3 7.4 7.1 6.9 7.3 6.9 7.4 7.0 7.2 7.1 7.1 7.3 7.5 7.4 7.3 7.2 7.2 7.2 7.1 7.6 7.2 7.4 7.5 7.7 7.5 7.4 7.5 7.4 7.4 7.6 7.1 7.1 7.2 7.2 6.8 6.9 7.0 7.3 7.3 7.3 7.2 7.0 7.0 7.1 7.2 6.9 7.2 7.3 7.6 7.2 7.4 7.5 7.4 7.7 7.7 7.5 7.2 7.3 7.2
TGMAPQ < 3 4.9 6.6 6.6 6.8 6.7 6.6 6.3 6.7 6.7 6.5 6.4 6.4 6.5 6.5 6.4 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.6 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.5 6.6 6.5 6.4 6.5 6.4 6.5 6.5 6.4 6.4 6.5 6.5 6.4 6.4 6.5 6.4 6.5 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.3 6.4 6.4 6.3 6.3 6.3 6.3
TGUnmapped 3.0 4.2 4.4 4.4 4.3 4.2 4.2 4.4 4.5 4.3 4.3 4.3 4.3 4.3 4.5 4.3 4.3 4.3 4.3 4.3 4.2 4.2 4.3 4.2 4.3 36.2 4.2 4.1 4.2 4.1 4.1 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.0 4.1 34.8 3.9 3.8 4.0 3.9 4.0 3.9 3.9 3.9 4.1 35.6 3.9 3.9 3.9 3.8 3.9 3.8 3.9 3.9 4.0 35.5 3.9 3.8 4.0 35.2 3.9 3.7 3.8 3.8 3.7 3.8 3.8 3.9 4.0
TTMAPQ >= 30 3.8 5.4 5.3 5.1 5.0 4.9 5.1 5.1 5.0 4.9 4.9 4.9 4.9 4.9 4.8 4.7 4.6 4.6 4.5 4.5 4.5 4.6 4.7 4.7 4.7 4.7 4.6 4.6 4.5 4.4 4.5 4.5 4.5 4.6 4.6 4.6 4.6 4.5 4.5 4.5 4.5 4.5 4.5 4.6 4.6 4.6 4.6 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.6 4.6 4.6 4.6 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.6 4.5 4.5 4.5 4.5 4.5 4.5 4.5
TTMAPQ >= 20 3.9 5.3 5.2 5.0 4.9 4.8 4.9 4.8 4.7 4.6 4.6 4.6 4.7 4.7 4.6 4.5 4.4 4.3 4.2 4.2 4.2 4.3 4.3 4.3 4.3 4.3 4.2 4.2 4.1 4.1 4.1 4.1 4.1 4.2 4.2 4.2 4.2 4.2 4.2 4.1 4.1 4.2 4.1 4.2 4.2 4.2 4.2 4.2 4.1 4.1 4.1 4.1 4.1 4.2 4.2 4.3 4.3 4.3 4.3 4.2 4.3 4.3 4.4 4.4 4.4 4.4 4.5 4.4 4.3 4.3 4.3 4.2 4.3 4.3
TTMAPQ >= 10 5.8 7.5 7.4 7.0 6.7 6.6 6.6 6.4 6.2 6.1 6.0 6.2 6.3 6.1 6.1 5.9 5.8 5.7 5.5 5.4 5.4 5.4 5.6 5.5 5.5 5.5 5.5 5.3 5.2 5.1 5.2 5.1 5.2 5.3 5.4 5.5 5.3 5.4 5.2 5.1 5.0 5.1 5.2 5.1 5.1 5.1 5.1 4.9 4.9 4.8 5.0 5.1 5.0 5.1 5.1 5.2 5.2 5.1 5.1 5.0 5.1 5.2 5.2 5.3 5.4 5.3 5.3 5.2 5.3 5.2 5.2 5.2 5.2 5.3
TTMAPQ >= 3 6.2 8.2 8.2 8.0 7.4 7.4 7.2 7.0 7.0 7.0 6.9 6.8 6.9 6.8 6.8 6.5 6.5 6.6 6.5 6.1 6.0 5.8 6.0 5.8 5.9 6.1 6.0 5.9 5.5 5.1 5.1 5.4 5.6 5.7 6.0 5.7 5.8 5.7 5.4 5.3 5.4 5.6 5.7 5.5 5.3 5.2 5.3 5.1 5.1 5.2 5.1 5.3 5.3 5.3 5.3 5.4 5.3 5.5 5.5 5.3 5.4 5.2 5.4 5.5 5.6 5.6 5.7 5.1 5.2 5.2 5.3 5.3 5.4 5.5
TTMAPQ < 3 4.2 5.8 5.8 5.6 5.4 5.2 5.4 5.4 5.3 5.2 5.1 5.1 5.2 5.1 5.1 5.0 4.9 4.8 4.7 4.7 4.8 4.8 4.9 4.8 4.8 4.8 4.8 4.7 4.6 4.5 4.6 4.6 4.7 4.7 4.7 4.7 4.7 4.7 4.6 4.6 4.6 4.6 4.6 4.7 4.6 4.6 4.7 4.5 4.5 4.5 4.5 4.5 4.5 4.5 4.6 4.7 4.7 4.6 4.5 4.5 4.5 4.6 4.6 4.6 4.6 4.6 4.7 4.6 4.6 4.5 4.5 4.5 4.6 4.6
TTUnmapped 2.9 4.7 4.8 4.7 4.5 4.5 4.8 4.8 4.7 4.6 4.6 4.8 4.7 4.8 36.7 4.7 4.7 4.6 4.5 4.6 4.5 4.6 4.6 4.6 4.6 4.6 4.6 4.5 4.4 4.3 4.4 4.4 4.4 4.4 4.5 4.5 4.5 4.4 4.4 4.4 4.4 4.5 4.5 4.6 4.6 4.5 4.5 4.5 4.3 4.3 4.3 4.3 4.2 4.2 4.2 4.2 4.4 35.9 4.3 4.2 4.2 4.1 4.3 35.7 4.3 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.3 4.3
Percentage of 2-mers at each position of the read for each alignment quality interval. Numbers shown in bold corresponds to p-values of <= 1e-100.

Error Distribution

MAPQ >= 30 MAPQ >= 20 MAPQ >= 10 MAPQ >= 3 MAPQ < 3

Nucleotide Composition MAPQ >= 30

A C G T N

Nucleotide Composition MAPQ >= 20

A C G T N

Nucleotide Composition MAPQ >= 10

A C G T N

Nucleotide Composition MAPQ >= 3

A C G T N

Nucleotide Composition MAPQ < 3

A C G T N

Nucleotide Composition Unmapped

A C G T N

Length Distribution MAPQ >= 30

Length Distribution MAPQ >= 20

Length Distribution MAPQ >= 10

Length Distribution MAPQ >= 3

Length Distribution MAPQ < 3

Length Distribution Unmapped

Top 5 over-represented 2-mers MAPQ >= 30

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

GG

CC

AG

GC

CT

GG

CC

GC

AG

CT

GG

CC

GC

AG

CT

GG

CC

GC

AG

CT

GG

CC

GC

AG

CT

GG

CC

GC

AG

CT

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

GG

CC

GC

AG

CT

CC

GG

GC

AG

CT

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

AG

CT

CC

GG

GC

AG

CT

CC

GG

GC

AG

CT

CC

GG

GC

AG

CT

CC

GG

GC

AG

CT

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

AG

CT

CC

GG

GC

AG

CT

CC

GG

GC

AG

CT

GG

CC

GC

AG

CT

GG

CC

GC

AG

CT

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

AG

CT

GG

CC

GC

AG

CT

GG

CC

GC

AG

CT

GG

CC

GC

AG

CT

GG

CC

GC

AG

CT

GG

CC

GC

AG

CT

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

AG

CT

GG

CC

GC

AG

CT

GG

CC

GC

AG

CT

GG

CC

GC

AG

CT

GG

CC

GC

AG

CT

CC

GG

GC

AG

CT

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

CT

AG

CC

GG

GC

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CT

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CC

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AG

CT

GG

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GC

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CT

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CT

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CC

GC

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CC

GC

CT

AG

GG

CC

GC

CT

AG

GG

CC

GC

CT

AG

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ >= 20

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

GG

CC

GC

AG

CT

GG

CC

GC

AG

CT

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GC

AG

CT

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CT

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GG

CC

GC

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CC

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GC

CG

CT

GG

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GC

CG

CT

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CC

GC

CG

CT

GG

CC

GC

CG

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CC

GC

CG

CT

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CG

CT

GG

CC

GC

CG

CT

GG

CC

GC

CG

AG

GG

CC

GC

CG

CT

GG

CC

GC

CG

CT

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CC

GC

CG

AG

GG

CC

GC

CG

AG

GG

CC

GC

CG

AG

GG

CC

GC

CG

AG

GG

CC

GC

CG

AG

GG

CC

GC

CG

AG

GG

CC

GC

CG

AG

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ >= 10

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

GG

AG

CC

CA

CT

GG

AG

TT

CC

CT

GG

AG

CC

TT

CT

GG

AG

TG

CT

CC

GG

AG

GC

CC

TG

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GC

CT

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TG

CT

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CT

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CT

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CT

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CT

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CT

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CT

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CC

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GC

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CT

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CT

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CT

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AG

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CT

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CT

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CC

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AG

CT

CC

GG

GC

AG

CA

CC

GG

GC

AG

CT

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ >= 3

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

GG

AG

CT

CA

GC

GG

TT

AG

TG

CT

GG

TT

CT

TG

CA

TT

GG

TG

CT

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GC

TG

CC

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GC

AG

TG

CC

GG

GC

AG

CA

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ < 3

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

GG

CC

AG

GC

CT

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GC

AG

CT

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GC

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CT

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CT

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers Unmapped

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

GA

GG

AA

AG

CC

AT

GG

AA

AG

CC

TC

GG

CC

TT

AA

CG

GG

AG

CC

TT

GG

CC

GC

AA

AG

GA

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GC

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GG

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GT

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AG

TC

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GA

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AA

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AT

GG

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TG

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CC

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AG

CC

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GC

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CG

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GA

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AG

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CC

GC

AA

GA

GG

CC

GC

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AC

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CC

GC

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GC

TT

AA

CG

GG

CC

GC

TT

GA

GG

CC

GC

AG

AC

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CC

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TT

CA

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CC

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AG

AG

GG

CC

GC

TT

GT

GG

CC

GC

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TG

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CC

GC

AG

GA

GG

CC

GC

TT

AT

GG

CC

GC

TT

TC

GG

CC

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TT

CT

GG

CC

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TC

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CC

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TT

CG

GG

CC

GC

TT

GT

GG

CC

GC

TT

TA

GG

CC

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TT

AT

GG

CC

GC

AG

TG

GG

CC

GC

AG

GC

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CC

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CC

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GC

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CG

GG

CC

GC

AA

GT

GG

CC

GC

AA

TC

GG

CC

GC

AA

CT

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CC

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TT

TT

GG

CC

GC

AA

TC

GG

CC

GC

TT

CT

GG

CC

GC

AA

TG

GG

CC

GC

AA

GC

GG

CC

AA

GA

CT

GG

CC

GC

TT

TT

GG

CC

GC

AA

TG

GG

CC

GC

AA

GA

GG

CC

GC

AA

AA

GG

CC

GA

GC

AA

GG

CC

GC

AG

AA

GG

CC

GC

AG

AA

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CC

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AA

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GC

AG

AA

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CC

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GC

AA

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CC

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CA

AA

GG

CC

AG

GA

 
Top 5 enriched 2-mers at each positon withion reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 20 over-represented 10-mers

MAPQ >= 30 MAPQ >= 20 MAPQ >= 10 MAPQ >= 3 MAPQ < 3 Unmapped
SeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-value
CGCCGCCGCC 911523 0.0e+00 GGGGGGGGGG 101323 0.0e+00 GGAGGCTGAG 28102 0.0e+00 CTCCTGACCT 7020 0.0e+00 GAGGCTGAGG 51696 0.0e+00 GGAAGAGCGG 3031056 0.0e+00
GGCGGCGGCG 855948 0.0e+00 TTTTTTTTTT 65426 0.0e+00 GAGGCTGAGG 27919 0.0e+00 TCCTGACCTC 6517 0.0e+00 GGAGGCTGAG 51633 0.0e+00 AAGAGCGGTT 3029617 0.0e+00
CCTGTAATCC 442644 0.0e+00 AAAAAAAAAA 61607 0.0e+00 AGGCTGAGGC 26931 0.0e+00 GAGGCTGAGG 6177 0.0e+00 CTCCTGACCT 50782 0.0e+00 AGAGCGGTTC 3022683 0.0e+00
GTAATCCCAG 424283 0.0e+00 CCCCCCCCCC 58900 0.0e+00 GGCTGAGGCA 25780 0.0e+00 GGAGGCTGAG 6138 0.0e+00 AGGCTGAGGC 48762 0.0e+00 GAGCGGTTCA 3021758 0.0e+00
GAGGAGGAGG 389723 0.0e+00 GGCGGGGGGG 54875 0.0e+00 GCTGAGGCAG 25498 0.0e+00 AGGCTGAGGC 6003 0.0e+00 CCCTAACCCT 48128 0.0e+00 ATCGGAAGAG 3020031 0.0e+00
GCCTGTAATC 380204 0.0e+00 GCGGGGGGGG 44262 0.0e+00 TCCCAGCTAC 24929 0.0e+00 CTGAGGCAGG 5696 0.0e+00 CCTAACCCTA 48108 0.0e+00 GATCGGAAGA 3019760 0.0e+00
GGAGGAGGAG 376500 0.0e+00 GCGGCGGCGG 40277 0.0e+00 CTGAGGCAGG 24828 0.0e+00 GGCTGAGGCA 5676 0.0e+00 ACCCTAACCC 48100 0.0e+00 AGCGGTTCAG 3019576 0.0e+00
CTCCTCCTCC 371190 0.0e+00 CGGGGGGGGG 38777 0.0e+00 CCCAGCTACT 24676 0.0e+00 GCTGAGGCAG 5655 0.0e+00 CTAACCCTAA 48096 0.0e+00 CGGTTCAGCA 3017698 0.0e+00
CAGGCTGGAG 352630 0.0e+00 GGCGGCGGCG 32810 0.0e+00 CCTCAGCCTC 24290 0.0e+00 TCCCAGCTAC 5618 0.0e+00 AACCCTAACC 48064 0.0e+00 GAAGAGCGGT 3017375 0.0e+00
CCAGGCTGGA 346892 0.0e+00 GAGGCTGAGG 32193 0.0e+00 CTCAGCCTCC 24273 0.0e+00 CCCAGCTACT 5525 0.0e+00 TAACCCTAAC 47972 0.0e+00 AGCAGGAATG 3015880 0.0e+00
CCCCTCCCCC 340402 0.0e+00 GCGGCGGGGG 32132 0.0e+00 TGAGGCAGGA 23631 0.0e+00 TGAGGCAGGA 5418 0.0e+00 TCCTGACCTC 46226 0.0e+00 TCAGCAGGAA 3015752 0.0e+00
TGGGATTACA 330009 0.0e+00 GGAGGCTGAG 31872 0.0e+00 TAATCCCAGC 23617 0.0e+00 CCTCAGCCTC 5331 0.0e+00 CCCAGCTACT 46067 0.0e+00 CAGCAGGAAT 3015384 0.0e+00
GCTCACTGCA 321363 0.0e+00 TAATCCCAGC 31079 0.0e+00 AGGCAGGAGA 23472 0.0e+00 AGGCAGGAGA 5323 0.0e+00 GCTCACTGCA 45922 0.0e+00 GGTTCAGCAG 3014319 0.0e+00
GCTGGGATTA 320368 0.0e+00 CGGCGGCGGC 30738 0.0e+00 GAGGCAGGAG 23446 0.0e+00 GGCAGGAGAA 5323 0.0e+00 GCTGAGGCAG 45358 0.0e+00 GTTCAGCAGG 3011971 0.0e+00
CCCCCGCCCC 311622 0.0e+00 GGGGCGGGGG 30430 0.0e+00 GGCAGGAGAA 23300 0.0e+00 GAGGCAGGAG 5299 0.0e+00 GGCTGAGGCA 45294 0.0e+00 GCGGTTCAGC 3011092 0.0e+00
AGGAGGAGGA 306404 0.0e+00 TGTAATCCCA 30165 0.0e+00 GCCTCAGCCT 23098 0.0e+00 CTCAGCCTCC 5263 0.0e+00 AGGGTTAGGG 45265 0.0e+00 TTCAGCAGGA 3009440 0.0e+00
TCCTCCTCCT 290382 0.0e+00 CGGCGGGGGG 30151 0.0e+00 GCAGGAGAAT 22942 0.0e+00 GCCTCAGCCT 5243 0.0e+00 TAGGGTTAGG 45164 0.0e+00 CGGAAGAGCG 3008162 0.0e+00
GATTACAGGC 283917 0.0e+00 GTAATCCCAG 29869 0.0e+00 GCTCACTGCA 22758 0.0e+00 GCAGGAGAAT 5160 0.0e+00 TCCCAGCTAC 45056 0.0e+00 GCAGGAATGC 3006848 0.0e+00
CCCCGCCGCC 282026 0.0e+00 CTGTAATCCC 29799 0.0e+00 GTAATCCCAG 22733 0.0e+00 GGGAGGCTGA 4928 0.0e+00 CTGAGGCAGG 45033 0.0e+00 TCGGAAGAGC 3006499 0.0e+00
GGGGCCGGGG 276736 0.0e+00 AGGCTGAGGC 29789 0.0e+00 CTCACTGCAA 22592 0.0e+00 TTCTCCTGCC 4900 0.0e+00 CCTCAGCCTC 44995 0.0e+00 CAGGAATGCC 2997750 0.0e+00