Number of alignments in various mapping quality (MAPQ) intervals and number of unmapped sequences. The percentage and number of alignments in each category is given in brackets.
Mean base quality of reads with low and high mapping quality.
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mer | Q | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 | 75 | 76 | 77 | 78 | 79 | 80 | 81 | 82 | 83 | 84 | 85 | 86 | 87 | 88 | 89 | 90 | 91 | 92 | 93 | 94 | 95 | 96 | 97 | 98 | 99 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AA | MAPQ >= 30 | 9.4 | 8.5 | 8.1 | 8.2 | 8.3 | 7.9 | 7.9 | 7.7 | 8.1 | 8.7 | 8.3 | 8.2 | 8.3 | 8.2 | 8.0 | 7.9 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.9 | 7.9 | 7.9 | 8.0 | 7.9 | 7.9 | 8.0 | 7.9 | 7.8 | 7.9 | 7.9 | 7.8 | 7.9 | 7.8 | 7.8 | 7.9 | 7.9 | 7.8 | 7.9 | 7.9 | 7.9 | 7.9 | 7.9 | 7.8 | 7.9 | 7.9 | 7.8 | 7.9 | 7.8 | 7.8 | 7.9 | 7.8 | 7.8 | 7.9 | 7.9 | 7.8 | 7.9 | 7.8 | 7.8 | 7.9 | 7.8 | 7.8 | 7.9 | 7.8 | 7.8 | 7.9 | 7.9 | 7.9 | 7.9 | 7.9 | 7.9 | 7.9 | 7.9 | 7.8 | 7.9 | 7.9 | 7.8 | 7.9 | 7.9 | 7.8 | 7.9 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.9 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 |
| AA | MAPQ >= 20 | 8.3 | 7.6 | 7.4 | 7.5 | 7.9 | 7.2 | 7.0 | 7.0 | 7.2 | 7.9 | 7.4 | 7.2 | 7.6 | 7.4 | 7.3 | 7.1 | 7.2 | 7.1 | 7.1 | 7.2 | 7.0 | 7.3 | 7.3 | 7.2 | 7.7 | 7.3 | 7.2 | 7.7 | 7.2 | 7.2 | 7.6 | 7.1 | 6.9 | 7.0 | 6.9 | 7.0 | 7.2 | 7.2 | 7.2 | 7.2 | 7.0 | 6.9 | 7.1 | 7.1 | 6.9 | 7.2 | 7.1 | 7.0 | 6.9 | 6.9 | 7.0 | 7.2 | 7.1 | 7.2 | 7.3 | 7.0 | 7.0 | 7.0 | 6.9 | 6.9 | 7.2 | 6.9 | 6.9 | 7.2 | 7.1 | 7.0 | 7.4 | 7.1 | 7.1 | 7.2 | 7.2 | 7.2 | 7.0 | 7.2 | 6.8 | 7.3 | 7.1 | 7.1 | 7.4 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 6.9 | 7.0 | 7.1 | 6.9 | 7.0 | 7.3 | 7.1 | 6.9 | 7.1 | 7.0 | 6.9 | 7.0 | 6.8 | 6.9 |
| AA | MAPQ < 3 | 7.3 | 6.9 | 6.7 | 6.8 | 7.0 | 6.4 | 6.7 | 6.3 | 6.6 | 7.2 | 6.8 | 6.8 | 7.0 | 7.0 | 6.8 | 6.8 | 6.6 | 6.4 | 6.5 | 6.4 | 6.4 | 6.6 | 6.6 | 6.8 | 6.9 | 6.6 | 6.5 | 6.7 | 6.6 | 6.6 | 6.6 | 6.6 | 6.6 | 6.6 | 6.6 | 6.4 | 6.5 | 6.4 | 6.4 | 6.6 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.5 | 6.6 | 6.5 | 6.5 | 6.4 | 6.3 | 6.5 | 6.4 | 6.4 | 6.5 | 6.4 | 6.3 | 6.5 | 6.6 | 6.6 | 6.9 | 7.0 | 6.7 | 6.9 | 6.8 | 6.7 | 6.8 | 6.6 | 6.6 | 6.6 | 6.6 | 6.6 | 6.7 | 6.7 | 6.5 | 6.6 | 6.6 | 6.4 | 6.5 | 6.5 | 6.5 | 6.5 | 6.6 | 6.4 | 6.5 | 6.5 | 6.4 | 6.5 | 6.5 | 6.4 | 6.6 | 6.4 | 6.4 | 6.4 | 6.5 | 6.4 | 6.5 | 6.7 | 6.3 |
| AC | MAPQ >= 30 | 4.8 | 5.2 | 4.9 | 4.8 | 5.2 | 5.1 | 5.2 | 4.9 | 4.7 | 5.2 | 5.2 | 5.0 | 5.1 | 5.1 | 5.1 | 5.2 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 |
| AC | MAPQ >= 20 | 4.8 | 5.4 | 5.0 | 4.9 | 5.2 | 5.0 | 5.3 | 5.0 | 4.6 | 5.3 | 5.1 | 5.0 | 4.8 | 5.0 | 5.1 | 5.1 | 5.2 | 5.2 | 5.0 | 5.2 | 5.2 | 5.1 | 5.3 | 5.2 | 4.9 | 5.2 | 5.0 | 5.1 | 5.2 | 5.0 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.3 | 5.4 | 5.1 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 5.2 | 5.1 | 5.2 | 5.3 | 5.0 | 5.1 | 5.3 | 5.2 | 5.0 | 5.1 | 5.0 | 5.0 | 5.2 | 5.0 | 5.0 | 5.2 | 5.2 | 5.1 | 5.4 | 5.3 | 5.1 | 5.4 | 5.0 | 5.3 | 5.3 | 5.2 | 5.0 | 5.1 | 5.0 | 5.2 | 5.1 | 5.0 | 5.2 | 5.2 | 5.0 | 5.1 | 5.3 | 5.0 | 5.1 | 5.3 | 5.2 | 5.0 | 5.3 | 5.0 | 5.1 | 5.4 | 5.3 | 5.1 | 5.1 | 4.9 |
| AC | MAPQ < 3 | 4.4 | 5.0 | 4.9 | 4.6 | 5.1 | 4.9 | 4.9 | 4.8 | 4.5 | 4.9 | 5.0 | 4.8 | 4.8 | 5.0 | 4.8 | 5.0 | 5.1 | 4.9 | 4.9 | 5.1 | 4.8 | 4.9 | 5.1 | 4.9 | 4.8 | 4.9 | 4.8 | 4.9 | 5.0 | 4.9 | 4.9 | 5.1 | 5.3 | 5.1 | 5.2 | 5.0 | 4.9 | 5.2 | 4.8 | 5.0 | 5.1 | 4.8 | 4.9 | 5.0 | 4.8 | 4.8 | 4.9 | 4.8 | 4.8 | 4.9 | 4.8 | 4.8 | 4.9 | 4.8 | 4.8 | 5.0 | 4.9 | 4.8 | 4.9 | 4.7 | 4.8 | 4.9 | 4.7 | 4.7 | 4.9 | 4.7 | 4.7 | 4.9 | 4.8 | 4.8 | 5.0 | 4.7 | 4.9 | 5.1 | 4.8 | 4.8 | 5.0 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.9 | 4.9 | 4.9 | 5.0 | 4.9 | 4.8 | 5.1 | 4.8 | 5.0 | 5.2 | 5.1 | 5.0 | 5.1 | 4.9 | 4.9 | 5.0 | 5.2 |
| AG | MAPQ >= 30 | 9.6 | 7.1 | 7.0 | 7.9 | 7.4 | 7.3 | 6.7 | 6.7 | 6.8 | 7.5 | 7.3 | 7.1 | 7.2 | 7.3 | 7.3 | 7.4 | 7.3 | 7.4 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.2 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.4 | 7.4 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.1 | 7.1 | 7.1 |
| AG | MAPQ >= 20 | 9.0 | 6.9 | 6.7 | 7.8 | 7.2 | 7.3 | 6.6 | 6.4 | 6.6 | 7.4 | 7.1 | 7.3 | 7.4 | 7.3 | 7.3 | 7.3 | 7.2 | 7.3 | 7.3 | 7.3 | 7.3 | 7.2 | 7.2 | 7.1 | 7.2 | 7.4 | 7.3 | 7.1 | 7.4 | 7.2 | 7.2 | 7.3 | 7.1 | 7.1 | 7.1 | 6.9 | 6.9 | 7.1 | 7.1 | 7.1 | 7.0 | 7.1 | 7.1 | 7.1 | 7.0 | 7.1 | 7.2 | 6.9 | 6.7 | 7.1 | 6.9 | 7.0 | 7.0 | 7.0 | 7.1 | 7.3 | 6.9 | 7.1 | 6.9 | 7.1 | 7.1 | 7.3 | 6.8 | 7.2 | 7.1 | 7.0 | 7.1 | 7.3 | 6.8 | 7.1 | 7.0 | 6.9 | 7.2 | 6.9 | 7.1 | 6.9 | 7.1 | 6.9 | 6.9 | 7.1 | 6.7 | 6.9 | 6.8 | 7.1 | 7.1 | 6.8 | 6.7 | 6.8 | 6.9 | 6.7 | 6.9 | 6.9 | 7.1 | 7.3 | 6.8 | 7.0 | 6.8 | 7.0 | 6.8 |
| AG | MAPQ < 3 | 9.1 | 6.9 | 6.8 | 7.6 | 7.1 | 7.1 | 6.5 | 7.0 | 6.7 | 7.7 | 7.3 | 7.0 | 7.1 | 7.2 | 7.1 | 7.1 | 7.1 | 7.4 | 7.0 | 7.3 | 7.2 | 6.9 | 7.0 | 6.9 | 6.9 | 7.3 | 7.1 | 7.3 | 7.1 | 7.2 | 7.4 | 7.2 | 7.3 | 7.2 | 7.1 | 7.1 | 7.1 | 7.2 | 7.1 | 7.1 | 7.1 | 7.0 | 7.1 | 7.1 | 7.0 | 7.1 | 7.1 | 7.1 | 7.2 | 7.0 | 7.0 | 7.1 | 7.1 | 7.0 | 7.0 | 7.0 | 7.0 | 6.9 | 6.9 | 6.9 | 6.9 | 7.0 | 7.1 | 6.9 | 7.1 | 7.0 | 6.9 | 7.1 | 6.8 | 6.8 | 6.8 | 6.7 | 6.7 | 6.8 | 6.7 | 6.7 | 6.7 | 6.6 | 6.6 | 6.7 | 6.5 | 6.5 | 6.6 | 6.5 | 6.5 | 6.4 | 6.5 | 6.4 | 6.5 | 6.4 | 6.3 | 6.5 | 6.4 | 6.4 | 6.3 | 6.3 | 6.3 | 6.2 | 6.4 |
| AT | MAPQ >= 30 | 8.4 | 6.0 | 6.4 | 6.0 | 6.4 | 6.6 | 6.6 | 6.6 | 5.9 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.3 | 6.2 | 6.2 | 6.2 | 6.1 | 6.3 | 6.2 | 6.1 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.1 | 6.3 | 6.2 | 6.1 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.0 | 6.1 | 6.1 | 6.0 |
| AT | MAPQ >= 20 | 8.3 | 5.7 | 6.0 | 6.0 | 6.3 | 6.6 | 6.7 | 6.8 | 5.7 | 6.5 | 6.4 | 6.1 | 6.5 | 6.1 | 6.3 | 6.1 | 6.0 | 6.1 | 6.0 | 6.0 | 5.9 | 6.2 | 6.2 | 5.8 | 6.0 | 6.0 | 6.3 | 6.1 | 6.0 | 5.9 | 6.3 | 6.2 | 5.9 | 6.2 | 6.2 | 6.0 | 6.2 | 6.2 | 5.9 | 6.5 | 6.2 | 6.0 | 6.0 | 6.0 | 5.9 | 5.9 | 6.0 | 6.0 | 6.1 | 5.9 | 5.8 | 6.1 | 6.0 | 5.7 | 6.0 | 6.0 | 5.7 | 6.0 | 5.9 | 5.7 | 6.0 | 6.1 | 5.9 | 6.1 | 6.0 | 6.0 | 5.9 | 5.8 | 5.8 | 5.9 | 6.0 | 5.7 | 5.9 | 5.8 | 5.7 | 5.9 | 5.9 | 5.8 | 6.0 | 6.2 | 5.9 | 6.1 | 5.9 | 6.1 | 5.8 | 5.9 | 5.6 | 5.9 | 6.0 | 5.7 | 5.9 | 5.7 | 5.7 | 5.9 | 5.7 | 5.5 | 5.6 | 5.7 | 5.6 |
| AT | MAPQ < 3 | 6.6 | 5.2 | 5.0 | 4.9 | 5.2 | 5.3 | 5.3 | 5.4 | 4.6 | 5.1 | 5.0 | 5.0 | 5.1 | 5.0 | 4.9 | 5.0 | 5.1 | 4.9 | 5.0 | 5.0 | 4.9 | 5.0 | 5.1 | 5.0 | 5.3 | 5.2 | 4.9 | 5.0 | 5.1 | 4.9 | 4.9 | 4.9 | 4.8 | 4.9 | 5.2 | 4.9 | 5.1 | 4.9 | 4.9 | 4.9 | 5.0 | 4.9 | 4.9 | 5.2 | 5.0 | 4.9 | 5.0 | 4.9 | 4.9 | 5.0 | 4.9 | 5.0 | 5.0 | 4.8 | 5.1 | 4.9 | 4.8 | 4.9 | 4.9 | 4.7 | 4.8 | 4.8 | 4.8 | 4.9 | 4.9 | 4.7 | 4.8 | 4.9 | 4.7 | 4.8 | 5.0 | 4.7 | 4.8 | 4.8 | 4.7 | 4.7 | 4.8 | 4.7 | 4.7 | 4.9 | 4.8 | 4.8 | 4.9 | 4.8 | 4.8 | 4.9 | 4.6 | 4.7 | 4.7 | 4.6 | 4.7 | 4.7 | 4.6 | 4.7 | 4.7 | 4.6 | 4.6 | 4.6 | 4.7 |
| CA | MAPQ >= 30 | 8.6 | 5.3 | 7.5 | 7.4 | 6.8 | 7.3 | 6.9 | 7.3 | 7.9 | 7.3 | 7.3 | 7.6 | 7.4 | 7.4 | 7.6 | 7.5 | 7.4 | 7.6 | 7.5 | 7.4 | 7.6 | 7.6 | 7.4 | 7.6 | 7.5 | 7.4 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.7 | 7.6 | 7.5 | 7.7 | 7.6 | 7.5 | 7.7 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.7 | 7.6 | 7.5 | 7.7 | 7.7 | 7.5 | 7.7 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.7 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.4 | 7.6 | 7.5 | 7.4 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.3 | 7.4 | 7.4 | 7.3 | 7.4 |
| CA | MAPQ >= 20 | 8.7 | 5.3 | 7.8 | 7.5 | 6.6 | 7.5 | 7.0 | 7.2 | 8.3 | 7.2 | 7.6 | 7.9 | 7.3 | 7.3 | 7.4 | 7.5 | 7.4 | 7.5 | 7.7 | 7.3 | 7.8 | 7.8 | 7.3 | 7.6 | 7.6 | 7.4 | 7.5 | 7.3 | 7.3 | 7.7 | 7.4 | 7.2 | 7.5 | 7.6 | 7.3 | 7.5 | 7.6 | 7.3 | 7.5 | 7.4 | 7.2 | 7.2 | 7.4 | 7.1 | 7.6 | 7.5 | 7.1 | 7.3 | 7.3 | 7.3 | 7.8 | 7.4 | 7.1 | 7.3 | 7.4 | 7.0 | 7.4 | 7.3 | 6.9 | 7.4 | 7.4 | 7.1 | 7.5 | 7.2 | 7.3 | 7.4 | 7.6 | 7.2 | 7.5 | 7.5 | 7.0 | 7.6 | 7.3 | 7.3 | 7.6 | 7.6 | 7.4 | 7.5 | 7.4 | 7.2 | 7.6 | 7.6 | 7.4 | 7.5 | 7.3 | 7.1 | 7.6 | 7.5 | 7.2 | 7.3 | 7.3 | 7.1 | 7.5 | 7.3 | 7.1 | 7.3 | 7.1 | 7.0 | 7.4 |
| CA | MAPQ < 3 | 8.3 | 5.2 | 7.5 | 7.3 | 6.5 | 7.0 | 6.9 | 7.0 | 7.7 | 7.1 | 7.1 | 7.4 | 7.2 | 7.0 | 7.4 | 7.3 | 7.3 | 7.3 | 7.2 | 7.3 | 7.4 | 7.3 | 7.0 | 7.3 | 7.3 | 7.0 | 7.3 | 7.3 | 7.1 | 7.4 | 7.4 | 7.2 | 7.4 | 7.4 | 7.1 | 7.4 | 7.5 | 7.1 | 7.3 | 7.2 | 7.0 | 7.2 | 7.2 | 7.0 | 7.2 | 7.2 | 7.1 | 7.3 | 7.1 | 7.1 | 7.4 | 7.2 | 7.0 | 7.3 | 7.2 | 6.9 | 7.1 | 7.1 | 7.0 | 7.2 | 7.1 | 6.9 | 7.1 | 7.0 | 6.8 | 7.0 | 7.0 | 6.9 | 7.0 | 7.0 | 6.9 | 7.1 | 7.1 | 6.8 | 7.0 | 7.0 | 6.8 | 6.9 | 6.9 | 6.7 | 6.9 | 7.0 | 6.7 | 6.9 | 7.0 | 6.7 | 6.9 | 7.0 | 6.7 | 6.9 | 6.9 | 6.9 | 7.0 | 7.0 | 6.7 | 6.9 | 6.8 | 6.8 | 6.7 |
| CC | MAPQ >= 30 | 6.1 | 5.5 | 6.6 | 5.8 | 5.8 | 6.0 | 6.1 | 6.2 | 5.8 | 5.8 | 6.1 | 6.1 | 6.1 | 6.3 | 6.3 | 6.3 | 6.4 | 6.5 | 6.4 | 6.4 | 6.5 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.4 | 6.5 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.5 | 6.4 | 6.5 | 6.5 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.5 | 6.4 | 6.5 | 6.6 | 6.4 | 6.5 | 6.5 | 6.4 | 6.5 | 6.6 | 6.4 | 6.5 | 6.6 | 6.5 | 6.5 | 6.6 | 6.4 | 6.5 | 6.6 | 6.5 | 6.5 | 6.6 | 6.5 | 6.5 | 6.6 | 6.5 | 6.5 | 6.6 | 6.5 | 6.5 | 6.6 | 6.5 | 6.5 | 6.6 | 6.5 | 6.5 | 6.6 | 6.5 | 6.6 | 6.6 | 6.5 | 6.6 | 6.7 | 6.6 | 6.6 | 6.7 | 6.7 | 6.7 | 6.8 | 6.8 | 6.8 | 6.9 |
| CC | MAPQ >= 20 | 6.2 | 6.0 | 7.0 | 5.9 | 6.3 | 6.2 | 6.3 | 6.6 | 6.0 | 6.0 | 6.4 | 6.2 | 6.5 | 6.5 | 6.7 | 6.6 | 6.7 | 6.9 | 6.6 | 6.7 | 6.7 | 6.4 | 6.6 | 6.8 | 6.7 | 6.4 | 6.4 | 6.3 | 6.5 | 6.6 | 6.7 | 7.0 | 7.1 | 6.9 | 6.9 | 7.3 | 7.1 | 7.1 | 6.8 | 6.6 | 6.6 | 7.0 | 6.8 | 6.8 | 6.8 | 6.7 | 6.8 | 7.0 | 7.0 | 6.8 | 7.0 | 7.2 | 7.1 | 7.2 | 6.8 | 6.9 | 7.3 | 7.0 | 7.0 | 7.2 | 7.1 | 7.1 | 7.0 | 6.9 | 6.8 | 7.0 | 6.8 | 7.0 | 7.2 | 6.9 | 6.7 | 6.9 | 6.7 | 6.8 | 7.2 | 7.0 | 7.1 | 7.3 | 7.3 | 7.3 | 7.2 | 7.2 | 6.9 | 7.2 | 7.2 | 7.1 | 7.2 | 7.4 | 7.1 | 7.3 | 7.4 | 7.5 | 7.7 | 7.3 | 7.3 | 7.7 | 7.5 | 7.7 | 7.7 |
| CC | MAPQ < 3 | 7.3 | 6.8 | 7.9 | 6.8 | 7.0 | 7.3 | 7.3 | 7.5 | 7.1 | 7.0 | 7.4 | 7.3 | 7.2 | 7.4 | 7.5 | 7.2 | 7.5 | 7.6 | 7.4 | 7.6 | 7.7 | 7.4 | 7.6 | 7.7 | 7.4 | 7.5 | 7.7 | 7.6 | 7.5 | 7.6 | 7.4 | 7.4 | 7.5 | 7.6 | 7.6 | 7.7 | 7.5 | 7.5 | 7.7 | 7.5 | 7.5 | 7.6 | 7.5 | 7.6 | 7.7 | 7.5 | 7.8 | 7.8 | 7.4 | 7.7 | 7.7 | 7.4 | 7.5 | 7.8 | 7.5 | 7.5 | 7.8 | 7.6 | 7.6 | 7.8 | 7.6 | 7.7 | 7.7 | 7.6 | 7.7 | 7.9 | 7.7 | 7.8 | 7.9 | 8.0 | 8.1 | 8.1 | 8.1 | 8.3 | 8.4 | 8.3 | 8.3 | 8.5 | 8.3 | 8.4 | 8.5 | 8.4 | 8.6 | 8.7 | 8.6 | 8.6 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.8 | 9.0 | 9.0 | 9.0 | 9.3 | 9.1 | 9.2 | 9.3 |
| CG | MAPQ >= 30 | 2.9 | 1.2 | 2.3 | 2.3 | 2.0 | 2.3 | 1.9 | 2.3 | 2.2 | 2.2 | 2.2 | 2.3 | 2.2 | 2.2 | 2.2 | 2.2 | 2.1 | 2.2 | 2.1 | 2.1 | 2.2 | 2.2 | 2.1 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.2 | 2.3 | 2.3 | 2.2 | 2.3 | 2.2 | 2.2 | 2.3 | 2.3 | 2.2 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.3 | 2.4 |
| CG | MAPQ >= 20 | 3.9 | 1.5 | 3.2 | 2.8 | 2.5 | 2.9 | 2.4 | 3.2 | 3.0 | 2.9 | 3.0 | 3.1 | 2.8 | 2.7 | 2.8 | 2.7 | 2.7 | 2.8 | 2.8 | 2.8 | 2.9 | 2.8 | 2.6 | 2.9 | 2.8 | 2.9 | 2.9 | 2.9 | 2.8 | 2.9 | 2.9 | 3.1 | 3.1 | 3.2 | 2.9 | 2.9 | 2.8 | 2.9 | 3.0 | 2.9 | 3.2 | 2.9 | 3.4 | 3.2 | 2.9 | 3.2 | 3.0 | 3.2 | 3.1 | 3.2 | 3.0 | 3.1 | 3.1 | 3.1 | 3.0 | 2.9 | 3.2 | 3.2 | 3.2 | 3.2 | 3.1 | 3.1 | 3.1 | 3.3 | 2.9 | 3.0 | 3.2 | 2.9 | 3.2 | 3.2 | 3.2 | 3.3 | 3.2 | 3.0 | 3.0 | 3.1 | 3.1 | 3.0 | 3.0 | 3.0 | 3.1 | 3.0 | 3.0 | 3.0 | 3.0 | 2.9 | 3.1 | 3.0 | 3.2 | 3.1 | 3.0 | 3.3 | 3.1 | 3.2 | 3.0 | 3.2 | 3.2 | 3.1 | 3.1 |
| CG | MAPQ < 3 | 4.7 | 2.2 | 4.1 | 4.1 | 3.3 | 3.9 | 3.3 | 3.8 | 3.8 | 3.7 | 3.7 | 4.2 | 3.7 | 3.6 | 4.0 | 3.8 | 3.5 | 3.8 | 3.7 | 3.6 | 3.7 | 3.5 | 3.6 | 3.8 | 3.7 | 3.7 | 3.8 | 3.7 | 3.8 | 3.8 | 3.7 | 3.7 | 3.9 | 3.8 | 3.9 | 3.9 | 3.7 | 3.8 | 4.0 | 3.9 | 4.0 | 4.0 | 3.9 | 3.8 | 3.9 | 4.1 | 3.8 | 4.2 | 4.0 | 3.8 | 4.0 | 3.8 | 3.8 | 4.0 | 3.9 | 3.8 | 4.0 | 4.0 | 3.8 | 3.9 | 3.8 | 3.7 | 4.0 | 3.8 | 3.8 | 3.9 | 3.8 | 3.9 | 4.1 | 3.9 | 4.0 | 4.1 | 4.0 | 4.0 | 4.1 | 4.1 | 4.0 | 4.2 | 4.2 | 4.0 | 4.2 | 4.1 | 4.1 | 4.2 | 4.2 | 4.1 | 4.3 | 4.2 | 4.2 | 4.3 | 4.2 | 4.2 | 4.3 | 4.4 | 4.2 | 4.5 | 4.4 | 4.2 | 4.6 |
| CT | MAPQ >= 30 | 9.1 | 5.9 | 7.3 | 7.4 | 6.9 | 7.5 | 7.4 | 7.7 | 7.2 | 7.0 | 7.2 | 7.3 | 7.2 | 7.1 | 7.2 | 7.2 | 7.1 | 7.3 | 7.3 | 7.2 | 7.3 | 7.4 | 7.2 | 7.3 | 7.4 | 7.2 | 7.3 | 7.4 | 7.2 | 7.3 | 7.3 | 7.2 | 7.3 | 7.3 | 7.2 | 7.3 | 7.3 | 7.2 | 7.3 | 7.4 | 7.2 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.2 | 7.2 | 7.3 | 7.3 | 7.3 | 7.3 | 7.2 | 7.3 | 7.3 | 7.2 | 7.2 | 7.3 | 7.2 | 7.3 | 7.3 | 7.2 | 7.3 | 7.3 | 7.2 | 7.3 | 7.3 | 7.2 | 7.2 | 7.3 | 7.2 | 7.2 | 7.3 | 7.1 | 7.1 |
| CT | MAPQ >= 20 | 9.2 | 5.7 | 7.4 | 7.3 | 6.5 | 7.2 | 7.1 | 7.3 | 6.8 | 6.6 | 6.8 | 6.9 | 6.9 | 6.9 | 6.9 | 7.0 | 6.9 | 7.0 | 7.0 | 6.8 | 6.9 | 6.9 | 7.0 | 6.9 | 7.0 | 7.0 | 7.2 | 7.0 | 7.2 | 6.9 | 7.0 | 7.0 | 6.9 | 7.1 | 7.0 | 6.9 | 7.3 | 7.0 | 7.3 | 7.1 | 7.1 | 6.9 | 7.1 | 7.2 | 7.1 | 7.1 | 7.0 | 7.1 | 7.4 | 7.3 | 7.1 | 7.2 | 7.6 | 7.2 | 7.4 | 7.2 | 7.2 | 7.4 | 7.0 | 7.2 | 7.2 | 7.1 | 7.2 | 7.3 | 7.2 | 7.1 | 7.2 | 7.1 | 7.4 | 7.5 | 7.1 | 7.2 | 7.3 | 7.2 | 7.2 | 7.3 | 7.2 | 7.3 | 7.3 | 7.5 | 7.1 | 7.5 | 7.6 | 7.1 | 7.3 | 7.2 | 7.3 | 7.2 | 7.3 | 7.2 | 7.2 | 7.0 | 7.1 | 7.0 | 6.9 | 7.0 | 7.2 | 7.1 | 6.8 |
| CT | MAPQ < 3 | 8.7 | 5.6 | 6.9 | 6.9 | 6.4 | 7.2 | 7.0 | 7.5 | 7.0 | 6.6 | 6.9 | 7.1 | 6.9 | 6.7 | 6.8 | 6.9 | 6.7 | 6.9 | 7.0 | 6.9 | 7.0 | 7.2 | 6.9 | 7.1 | 7.2 | 6.9 | 6.9 | 7.0 | 6.9 | 7.0 | 7.0 | 7.0 | 7.0 | 7.1 | 7.0 | 7.0 | 7.3 | 6.9 | 7.1 | 7.1 | 6.9 | 6.9 | 7.0 | 6.9 | 7.0 | 7.0 | 6.9 | 6.8 | 7.0 | 6.9 | 7.1 | 7.1 | 6.9 | 7.0 | 7.1 | 6.8 | 7.1 | 7.0 | 6.9 | 6.8 | 7.0 | 6.8 | 6.8 | 7.1 | 6.7 | 6.8 | 6.9 | 6.6 | 6.7 | 6.7 | 6.6 | 6.7 | 6.6 | 6.5 | 6.6 | 6.6 | 6.6 | 6.5 | 6.6 | 6.5 | 6.4 | 6.7 | 6.5 | 6.5 | 6.6 | 6.5 | 6.5 | 6.6 | 6.6 | 6.5 | 6.5 | 6.4 | 6.4 | 6.5 | 6.4 | 6.3 | 6.4 | 6.2 | 6.4 |
| GA | MAPQ >= 30 | 5.5 | 7.2 | 6.7 | 6.7 | 6.9 | 6.4 | 6.2 | 5.5 | 6.3 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.2 | 6.1 | 6.1 |
| GA | MAPQ >= 20 | 5.5 | 7.1 | 6.7 | 6.8 | 7.3 | 6.5 | 6.4 | 5.4 | 6.6 | 6.3 | 6.2 | 6.5 | 6.4 | 6.4 | 6.2 | 6.1 | 6.2 | 6.1 | 6.3 | 6.2 | 6.1 | 6.4 | 6.1 | 6.4 | 6.3 | 6.5 | 6.7 | 6.3 | 6.2 | 6.7 | 6.4 | 6.2 | 6.3 | 6.3 | 6.1 | 6.4 | 6.4 | 6.1 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.1 | 6.3 | 6.2 | 6.1 | 6.0 | 6.2 | 6.0 | 6.2 | 6.2 | 6.1 | 6.3 | 6.4 | 6.0 | 6.2 | 6.1 | 6.3 | 6.4 | 6.3 | 6.2 | 6.4 | 6.1 | 6.2 | 6.2 | 6.3 | 6.4 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.1 | 6.1 | 6.0 | 5.9 | 6.2 | 6.0 | 5.9 | 6.0 | 5.9 | 6.2 | 6.0 | 6.2 | 6.0 | 6.0 | 6.2 | 6.0 | 6.3 | 6.1 | 6.2 | 6.3 | 5.9 | 6.0 | 5.9 | 6.2 | 6.0 | 6.1 |
| GA | MAPQ < 3 | 6.0 | 7.2 | 6.5 | 6.7 | 6.8 | 6.5 | 6.2 | 5.5 | 6.7 | 6.2 | 6.2 | 6.3 | 6.3 | 6.1 | 6.1 | 6.3 | 6.1 | 6.2 | 6.4 | 6.1 | 6.2 | 6.4 | 6.5 | 6.1 | 6.2 | 6.1 | 6.4 | 6.3 | 6.3 | 6.4 | 6.4 | 6.6 | 6.2 | 6.6 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.2 | 6.4 | 6.2 | 6.3 | 6.3 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.3 | 6.0 | 6.1 | 6.4 | 6.0 | 6.1 | 6.4 | 6.0 | 6.1 | 6.2 | 6.0 | 6.0 | 6.0 | 5.9 | 6.0 | 6.0 | 5.9 | 5.9 | 6.1 | 6.0 | 5.9 | 6.0 | 5.9 | 5.9 | 5.9 | 5.9 | 5.8 | 5.9 | 5.8 | 6.0 | 6.1 | 5.9 | 5.9 | 5.9 | 5.8 | 5.6 | 5.9 | 5.8 | 5.4 |
| GC | MAPQ >= 30 | 4.2 | 5.9 | 5.1 | 5.1 | 5.7 | 5.2 | 5.6 | 5.3 | 5.1 | 5.6 | 5.7 | 5.5 | 5.5 | 5.5 | 5.4 | 5.5 | 5.6 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.6 | 5.6 | 5.6 | 5.6 | 5.5 | 5.5 | 5.6 | 5.6 | 5.5 | 5.6 | 5.5 | 5.5 | 5.6 | 5.5 | 5.5 | 5.6 | 5.5 | 5.5 | 5.6 | 5.6 | 5.5 | 5.6 | 5.5 | 5.5 | 5.5 | 5.6 | 5.5 | 5.6 | 5.5 | 5.5 | 5.6 | 5.6 | 5.5 | 5.5 | 5.5 | 5.5 | 5.6 | 5.6 | 5.5 | 5.6 | 5.5 | 5.5 | 5.6 | 5.6 | 5.5 | 5.6 | 5.5 | 5.5 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.5 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.7 | 5.6 | 5.6 | 5.6 | 5.6 |
| GC | MAPQ >= 20 | 4.8 | 6.5 | 5.3 | 5.3 | 5.9 | 5.4 | 5.9 | 5.8 | 5.6 | 6.3 | 6.3 | 5.9 | 5.8 | 6.0 | 5.8 | 6.0 | 6.0 | 5.9 | 5.9 | 6.2 | 6.1 | 6.2 | 6.2 | 6.0 | 6.0 | 6.1 | 6.0 | 6.3 | 6.2 | 6.1 | 6.0 | 6.2 | 6.3 | 6.0 | 6.3 | 6.2 | 5.8 | 6.0 | 6.0 | 6.0 | 6.1 | 6.0 | 6.3 | 6.3 | 6.3 | 6.0 | 6.2 | 6.4 | 6.2 | 6.4 | 6.5 | 6.0 | 6.2 | 6.0 | 6.1 | 6.6 | 6.3 | 6.1 | 6.5 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.2 | 6.3 | 6.1 | 6.6 | 6.4 | 6.0 | 6.5 | 6.2 | 6.3 | 6.7 | 6.4 | 6.5 | 6.4 | 6.4 | 6.3 | 6.5 | 6.6 | 6.5 | 6.3 | 6.2 | 6.2 | 6.3 | 6.4 | 6.1 | 6.1 | 6.2 | 6.0 | 6.3 | 6.0 | 6.0 | 6.4 | 6.0 | 6.1 | 6.1 | 6.3 |
| GC | MAPQ < 3 | 5.3 | 7.5 | 6.1 | 6.4 | 7.3 | 6.3 | 7.1 | 6.8 | 6.5 | 7.1 | 7.6 | 7.0 | 6.9 | 7.0 | 7.0 | 6.9 | 7.0 | 7.0 | 7.2 | 7.1 | 7.0 | 7.0 | 7.0 | 7.1 | 7.1 | 7.1 | 7.2 | 7.1 | 7.1 | 7.2 | 7.1 | 7.2 | 7.2 | 7.1 | 7.2 | 7.2 | 7.1 | 7.1 | 7.2 | 7.1 | 7.2 | 7.1 | 7.1 | 7.2 | 7.1 | 7.3 | 7.3 | 7.1 | 7.3 | 7.4 | 7.1 | 7.2 | 7.2 | 7.1 | 7.1 | 7.4 | 7.2 | 7.1 | 7.2 | 7.1 | 7.0 | 7.1 | 7.2 | 7.0 | 7.0 | 7.1 | 7.0 | 7.0 | 7.1 | 7.1 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 6.9 | 6.9 | 6.9 | 6.8 | 7.0 | 7.1 | 6.8 | 6.9 | 6.8 | 6.8 | 6.9 | 6.9 | 6.8 | 6.9 | 6.8 | 6.8 | 6.9 | 6.9 | 6.7 | 6.9 | 6.7 | 6.8 | 6.9 | 6.7 |
| GG | MAPQ >= 30 | 8.4 | 7.8 | 7.9 | 7.2 | 6.8 | 6.6 | 6.0 | 5.6 | 5.9 | 6.1 | 6.2 | 6.1 | 6.2 | 6.2 | 6.4 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.4 | 6.4 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.4 | 6.4 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.5 | 6.4 | 6.5 | 6.5 | 6.4 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.6 | 6.5 | 6.6 | 6.5 | 6.5 | 6.6 | 6.6 | 6.6 | 6.7 | 6.7 | 6.7 | 6.8 | 6.8 | 6.8 | 6.8 | 6.9 | 6.9 | 6.9 | 6.9 | 7.0 | 7.0 | 7.0 | 7.1 | 7.2 | 7.3 | 7.3 | 7.4 |
| GG | MAPQ >= 20 | 9.3 | 8.6 | 8.4 | 8.1 | 7.3 | 7.1 | 6.6 | 6.2 | 6.8 | 6.9 | 7.0 | 6.8 | 7.3 | 6.8 | 7.1 | 7.3 | 7.1 | 7.1 | 7.3 | 7.0 | 7.1 | 7.0 | 6.9 | 6.8 | 6.7 | 6.8 | 6.9 | 6.9 | 7.0 | 6.8 | 7.0 | 6.9 | 7.0 | 7.3 | 7.5 | 7.2 | 7.0 | 6.9 | 6.9 | 7.1 | 7.0 | 7.3 | 7.1 | 7.2 | 7.3 | 7.4 | 7.2 | 6.9 | 7.1 | 6.7 | 6.9 | 6.8 | 6.8 | 7.0 | 7.4 | 7.0 | 6.8 | 7.1 | 6.9 | 6.9 | 7.4 | 7.3 | 7.3 | 7.1 | 7.3 | 7.4 | 7.6 | 7.2 | 7.3 | 7.5 | 7.5 | 7.4 | 7.5 | 7.4 | 7.5 | 7.4 | 7.1 | 7.1 | 7.2 | 7.2 | 7.3 | 7.5 | 7.4 | 7.6 | 7.9 | 7.9 | 7.6 | 7.7 | 7.6 | 7.8 | 7.8 | 7.8 | 7.8 | 8.3 | 8.3 | 8.2 | 8.6 | 8.6 | 8.7 |
| GG | MAPQ < 3 | 9.9 | 9.0 | 9.3 | 8.9 | 8.4 | 8.1 | 7.6 | 7.1 | 7.7 | 7.9 | 7.9 | 7.9 | 8.2 | 8.0 | 8.2 | 8.4 | 8.3 | 8.3 | 8.5 | 8.3 | 8.7 | 8.8 | 8.2 | 8.3 | 8.2 | 8.1 | 8.3 | 8.3 | 8.2 | 8.4 | 8.4 | 8.2 | 8.5 | 8.5 | 8.4 | 8.5 | 8.7 | 8.7 | 8.7 | 9.0 | 8.8 | 8.8 | 9.0 | 8.8 | 8.9 | 8.9 | 8.8 | 9.0 | 9.1 | 8.8 | 9.0 | 9.2 | 9.1 | 9.2 | 9.4 | 9.4 | 9.4 | 9.6 | 9.7 | 9.7 | 9.9 | 9.8 | 9.8 | 9.9 | 9.8 | 10.1 | 10.0 | 10.1 | 10.3 | 10.3 | 10.2 | 10.3 | 10.4 | 10.4 | 10.4 | 10.5 | 10.6 | 10.6 | 10.8 | 10.8 | 10.6 | 10.7 | 10.6 | 10.7 | 10.8 | 10.7 | 10.6 | 10.8 | 10.7 | 10.6 | 10.7 | 10.6 | 10.6 | 10.8 | 10.6 | 10.9 | 11.2 | 10.9 | 11.1 |
| GT | MAPQ >= 30 | 7.1 | 5.1 | 4.6 | 5.2 | 5.6 | 5.4 | 5.7 | 5.4 | 5.0 | 5.1 | 5.3 | 5.1 | 5.2 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 5.1 | 5.0 | 4.9 | 5.0 | 5.0 | 4.9 |
| GT | MAPQ >= 20 | 6.8 | 4.9 | 4.4 | 5.0 | 5.6 | 5.4 | 5.5 | 5.4 | 4.9 | 5.0 | 5.2 | 5.0 | 5.2 | 5.4 | 5.1 | 5.4 | 5.5 | 5.3 | 5.5 | 5.4 | 5.3 | 5.3 | 5.3 | 5.0 | 5.5 | 5.2 | 5.1 | 5.2 | 5.3 | 5.1 | 5.1 | 5.1 | 4.8 | 5.2 | 5.0 | 5.0 | 5.1 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.3 | 5.2 | 5.1 | 5.5 | 5.5 | 5.2 | 5.2 | 5.1 | 5.1 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.4 | 5.2 | 5.4 | 5.1 | 5.0 | 5.2 | 5.2 | 5.3 | 5.2 | 4.9 | 5.1 | 5.0 | 4.9 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 4.8 | 5.1 | 5.1 | 4.9 | 4.8 | 4.7 | 4.9 | 4.8 | 4.8 | 4.8 | 5.0 | 5.2 | 4.9 | 5.1 | 4.9 | 5.0 | 4.9 | 4.9 | 4.9 | 5.0 | 5.2 | 4.9 | 4.9 | 5.1 | 4.6 |
| GT | MAPQ < 3 | 7.2 | 5.0 | 4.5 | 5.3 | 5.5 | 5.4 | 5.7 | 5.4 | 5.0 | 5.1 | 5.2 | 5.0 | 5.3 | 5.4 | 5.1 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.0 | 5.2 | 5.0 | 4.9 | 5.2 | 5.0 | 4.9 | 5.1 | 5.1 | 4.9 | 5.2 | 5.0 | 4.8 | 5.1 | 4.9 | 4.9 | 5.1 | 5.0 | 4.9 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 4.8 | 5.0 | 5.0 | 4.9 | 5.2 | 5.2 | 4.9 | 5.0 | 4.9 | 4.9 | 5.0 | 4.9 | 4.8 | 4.9 | 4.8 | 4.7 | 4.9 | 4.9 | 4.8 | 5.0 | 4.8 | 4.8 | 4.9 | 4.8 | 4.9 | 4.9 | 4.8 | 4.8 | 4.9 | 4.8 | 4.9 | 4.8 | 4.9 | 4.9 | 4.8 | 4.9 | 4.8 | 4.8 | 4.9 | 4.7 | 4.8 | 4.8 | 4.7 | 4.8 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.8 | 4.9 | 4.7 | 4.8 | 4.8 | 4.6 |
| TA | MAPQ >= 30 | 3.4 | 5.4 | 4.7 | 5.0 | 4.9 | 4.8 | 4.9 | 5.0 | 5.4 | 4.9 | 4.7 | 4.9 | 4.9 | 5.0 | 5.0 | 5.0 | 4.9 | 5.0 | 5.0 | 5.0 | 4.9 | 4.9 | 4.9 | 4.8 | 4.8 | 4.9 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.9 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.7 | 4.8 | 4.8 |
| TA | MAPQ >= 20 | 3.0 | 5.1 | 4.3 | 4.8 | 4.5 | 4.4 | 4.7 | 4.5 | 5.2 | 4.5 | 4.4 | 4.6 | 4.6 | 4.9 | 4.7 | 4.8 | 4.9 | 4.8 | 4.7 | 4.7 | 4.8 | 4.6 | 4.6 | 4.6 | 4.5 | 4.6 | 4.5 | 4.7 | 4.5 | 4.8 | 4.5 | 4.6 | 4.7 | 4.5 | 4.8 | 4.8 | 4.6 | 4.6 | 5.1 | 4.6 | 4.9 | 5.0 | 4.7 | 4.6 | 4.6 | 4.5 | 4.6 | 4.5 | 4.6 | 4.5 | 4.5 | 4.5 | 4.6 | 4.6 | 4.6 | 4.7 | 4.5 | 4.4 | 4.5 | 4.7 | 4.6 | 4.5 | 4.7 | 4.8 | 4.7 | 4.7 | 4.4 | 4.3 | 4.5 | 4.6 | 4.4 | 4.4 | 4.7 | 4.4 | 4.6 | 4.3 | 4.5 | 4.7 | 4.5 | 4.5 | 4.6 | 4.5 | 4.7 | 4.5 | 4.5 | 4.4 | 4.4 | 4.5 | 4.5 | 4.5 | 4.3 | 4.3 | 4.6 | 4.5 | 4.6 | 4.4 | 4.2 | 4.4 | 4.5 |
| TA | MAPQ < 3 | 2.4 | 3.9 | 3.4 | 3.6 | 3.5 | 3.4 | 3.6 | 3.6 | 4.0 | 3.5 | 3.4 | 3.5 | 3.6 | 3.6 | 3.6 | 3.6 | 3.6 | 3.5 | 3.7 | 3.5 | 3.5 | 3.5 | 3.5 | 3.6 | 3.6 | 3.6 | 3.7 | 3.5 | 3.5 | 3.5 | 3.4 | 3.6 | 3.5 | 3.5 | 3.5 | 3.5 | 3.5 | 3.5 | 3.5 | 3.5 | 3.4 | 3.5 | 3.6 | 3.4 | 3.4 | 3.5 | 3.4 | 3.4 | 3.4 | 3.4 | 3.6 | 3.5 | 3.4 | 3.5 | 3.4 | 3.4 | 3.6 | 3.4 | 3.3 | 3.3 | 3.4 | 3.5 | 3.4 | 3.5 | 3.5 | 3.4 | 3.4 | 3.4 | 3.4 | 3.4 | 3.3 | 3.4 | 3.5 | 3.3 | 3.3 | 3.4 | 3.3 | 3.4 | 3.4 | 3.3 | 3.4 | 3.5 | 3.3 | 3.3 | 3.5 | 3.3 | 3.3 | 3.3 | 3.3 | 3.3 | 3.3 | 3.3 | 3.3 | 3.3 | 3.3 | 3.4 | 3.3 | 3.3 | 3.2 |
| TC | MAPQ >= 30 | 2.8 | 7.2 | 6.1 | 5.7 | 6.3 | 6.1 | 6.7 | 6.7 | 6.6 | 6.3 | 6.4 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 6.3 | 6.3 | 6.2 | 6.4 | 6.3 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.3 | 6.2 | 6.4 | 6.3 | 6.2 | 6.4 | 6.3 | 6.2 | 6.4 | 6.3 | 6.2 | 6.4 | 6.3 | 6.3 | 6.4 | 6.4 | 6.2 | 6.4 | 6.4 | 6.3 | 6.4 | 6.3 | 6.2 | 6.4 | 6.3 | 6.2 | 6.4 | 6.3 | 6.2 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.2 | 6.4 | 6.3 | 6.2 | 6.4 | 6.3 | 6.2 | 6.4 | 6.3 | 6.2 | 6.4 | 6.3 | 6.2 | 6.4 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.1 | 6.3 | 6.2 | 6.1 | 6.2 | 6.2 |
| TC | MAPQ >= 20 | 2.8 | 7.5 | 6.1 | 5.7 | 6.5 | 6.2 | 6.8 | 6.7 | 6.5 | 6.1 | 6.4 | 6.4 | 6.2 | 6.2 | 6.2 | 6.1 | 6.3 | 6.1 | 5.9 | 6.2 | 5.9 | 5.8 | 6.2 | 6.2 | 6.0 | 6.3 | 6.1 | 6.0 | 6.1 | 6.2 | 6.2 | 6.3 | 6.1 | 6.0 | 6.2 | 6.2 | 6.1 | 6.3 | 6.1 | 6.4 | 6.2 | 6.4 | 5.9 | 6.2 | 6.3 | 6.3 | 6.4 | 6.4 | 6.5 | 6.5 | 6.4 | 6.4 | 6.3 | 6.4 | 6.0 | 6.3 | 6.1 | 6.2 | 6.3 | 6.2 | 6.1 | 6.2 | 6.5 | 6.0 | 6.2 | 6.3 | 6.2 | 6.3 | 6.1 | 6.1 | 6.5 | 6.4 | 6.0 | 6.3 | 6.2 | 6.2 | 6.5 | 6.3 | 6.2 | 6.3 | 6.4 | 6.0 | 6.3 | 6.4 | 5.8 | 6.5 | 6.3 | 6.2 | 6.3 | 6.3 | 6.4 | 6.4 | 6.1 | 6.0 | 6.2 | 6.1 | 6.1 | 6.1 | 6.3 |
| TC | MAPQ < 3 | 2.8 | 7.0 | 6.2 | 5.4 | 6.1 | 5.9 | 6.5 | 6.4 | 6.4 | 6.0 | 6.1 | 6.0 | 5.9 | 6.2 | 5.9 | 6.0 | 6.0 | 5.9 | 5.9 | 6.0 | 5.9 | 5.9 | 6.2 | 6.0 | 5.9 | 6.2 | 5.9 | 5.8 | 6.1 | 6.0 | 5.9 | 6.1 | 5.9 | 5.8 | 6.0 | 6.1 | 5.8 | 6.3 | 5.9 | 5.9 | 6.1 | 6.0 | 5.9 | 6.0 | 6.2 | 5.9 | 6.1 | 5.9 | 5.9 | 6.2 | 5.9 | 5.9 | 6.5 | 5.9 | 5.7 | 6.1 | 5.9 | 5.7 | 6.0 | 5.9 | 5.7 | 5.9 | 5.9 | 5.7 | 5.9 | 5.8 | 5.7 | 6.0 | 5.9 | 5.7 | 5.8 | 5.9 | 5.7 | 5.8 | 5.8 | 5.6 | 5.8 | 5.8 | 5.6 | 5.9 | 5.9 | 5.7 | 5.9 | 5.9 | 5.7 | 5.9 | 6.0 | 5.7 | 5.9 | 5.9 | 5.8 | 5.8 | 5.9 | 5.6 | 6.0 | 5.8 | 5.6 | 5.9 | 5.6 |
| TG | MAPQ >= 30 | 5.1 | 8.2 | 7.0 | 7.6 | 7.4 | 7.4 | 7.2 | 7.9 | 8.0 | 7.6 | 7.3 | 7.5 | 7.5 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.5 | 7.6 | 7.5 | 7.5 | 7.5 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.5 | 7.6 | 7.6 | 7.4 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.4 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.4 | 7.4 | 7.5 | 7.4 | 7.4 | 7.4 | 7.3 | 7.4 | 7.4 |
| TG | MAPQ >= 20 | 4.9 | 7.9 | 6.9 | 7.3 | 7.4 | 7.1 | 7.2 | 8.0 | 8.1 | 7.4 | 7.1 | 7.5 | 7.2 | 7.5 | 7.6 | 7.5 | 7.4 | 7.7 | 7.2 | 7.6 | 7.6 | 7.3 | 7.5 | 7.7 | 7.8 | 7.5 | 7.7 | 7.8 | 7.5 | 7.6 | 7.2 | 7.2 | 7.5 | 7.2 | 7.4 | 7.4 | 7.5 | 7.4 | 7.5 | 7.3 | 7.4 | 7.5 | 7.2 | 7.5 | 7.8 | 7.4 | 7.3 | 7.6 | 7.3 | 7.6 | 7.5 | 7.3 | 7.6 | 7.9 | 7.3 | 7.5 | 7.6 | 7.8 | 7.6 | 7.6 | 7.4 | 7.5 | 7.5 | 7.4 | 7.5 | 7.7 | 7.2 | 7.4 | 7.5 | 7.3 | 7.3 | 7.4 | 7.3 | 7.5 | 7.4 | 7.1 | 7.2 | 7.3 | 7.3 | 7.5 | 7.5 | 7.3 | 7.4 | 7.6 | 7.4 | 7.3 | 7.6 | 7.2 | 7.5 | 7.3 | 7.4 | 7.0 | 7.2 | 7.0 | 7.0 | 7.3 | 7.1 | 7.0 | 7.2 |
| TG | MAPQ < 3 | 5.0 | 8.2 | 7.1 | 7.4 | 7.5 | 7.4 | 7.4 | 8.0 | 8.2 | 7.7 | 7.3 | 7.7 | 7.6 | 7.5 | 7.6 | 7.5 | 7.7 | 7.8 | 7.4 | 7.6 | 7.8 | 7.4 | 7.5 | 7.6 | 7.4 | 7.8 | 7.6 | 7.4 | 7.5 | 7.7 | 7.5 | 7.5 | 7.6 | 7.4 | 7.5 | 7.6 | 7.4 | 7.6 | 7.6 | 7.5 | 7.4 | 7.7 | 7.4 | 7.5 | 7.8 | 7.3 | 7.4 | 7.5 | 7.3 | 7.5 | 7.6 | 7.3 | 7.4 | 7.5 | 7.5 | 7.4 | 7.4 | 7.3 | 7.5 | 7.5 | 7.2 | 7.3 | 7.3 | 7.2 | 7.4 | 7.3 | 7.1 | 7.3 | 7.3 | 7.1 | 7.2 | 7.2 | 7.0 | 7.1 | 7.0 | 7.1 | 7.0 | 7.2 | 7.1 | 7.0 | 7.0 | 6.9 | 6.9 | 7.0 | 6.8 | 6.9 | 6.9 | 6.8 | 6.8 | 6.9 | 6.8 | 6.8 | 6.8 | 6.7 | 6.7 | 6.8 | 6.6 | 6.5 | 7.0 |
| TT | MAPQ >= 30 | 4.7 | 8.6 | 7.8 | 7.6 | 7.6 | 8.3 | 9.0 | 9.2 | 9.0 | 8.4 | 8.4 | 8.5 | 8.4 | 8.3 | 8.0 | 7.9 | 7.8 | 7.7 | 7.7 | 7.8 | 7.8 | 7.9 | 8.0 | 7.9 | 8.0 | 8.0 | 7.9 | 7.9 | 8.0 | 7.8 | 7.8 | 7.8 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.8 | 7.7 | 7.8 | 7.8 | 7.8 | 7.8 | 7.9 | 7.8 | 7.8 | 7.9 | 7.8 | 7.8 | 7.9 | 7.7 | 7.8 | 7.8 | 7.7 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.7 | 7.8 | 7.8 | 7.7 | 7.8 | 7.8 | 7.7 | 7.8 | 7.8 | 7.7 | 7.8 | 7.8 | 7.7 | 7.8 | 7.8 | 7.8 | 7.8 | 7.9 | 7.8 | 7.8 | 7.9 | 7.8 | 7.9 | 7.9 | 7.8 | 7.8 | 7.9 | 7.8 | 7.8 | 7.9 | 7.8 | 7.8 | 7.9 | 7.8 | 7.8 | 7.9 | 7.8 | 7.9 | 7.9 | 7.8 |
| TT | MAPQ >= 20 | 4.6 | 8.4 | 7.3 | 7.2 | 7.1 | 7.8 | 8.4 | 8.5 | 8.2 | 7.5 | 7.7 | 7.6 | 7.6 | 7.5 | 7.4 | 7.4 | 7.2 | 7.0 | 7.5 | 7.5 | 7.4 | 7.7 | 7.8 | 7.8 | 7.3 | 7.4 | 7.2 | 7.3 | 7.4 | 7.2 | 7.3 | 7.5 | 7.4 | 7.3 | 7.3 | 7.1 | 6.9 | 7.2 | 7.0 | 7.2 | 7.5 | 7.0 | 7.2 | 7.4 | 7.2 | 7.1 | 7.3 | 7.4 | 7.4 | 7.4 | 7.2 | 7.1 | 7.1 | 7.0 | 7.0 | 7.1 | 7.2 | 7.2 | 7.4 | 7.1 | 7.0 | 7.0 | 6.9 | 7.0 | 7.1 | 6.8 | 6.9 | 7.0 | 6.8 | 6.9 | 7.0 | 6.9 | 7.0 | 7.1 | 7.1 | 7.2 | 7.2 | 7.2 | 7.1 | 7.1 | 6.9 | 7.1 | 7.0 | 7.0 | 7.3 | 7.2 | 7.2 | 7.2 | 7.0 | 7.1 | 7.0 | 7.2 | 7.0 | 7.1 | 7.2 | 7.2 | 7.2 | 7.3 | 7.2 |
| TT | MAPQ < 3 | 4.8 | 8.3 | 7.3 | 7.2 | 7.1 | 7.6 | 8.1 | 8.0 | 7.8 | 7.1 | 7.1 | 7.2 | 7.2 | 7.2 | 7.2 | 7.0 | 6.9 | 6.8 | 6.9 | 6.9 | 6.8 | 6.9 | 7.0 | 6.9 | 7.0 | 7.1 | 6.9 | 6.9 | 6.8 | 6.7 | 6.7 | 6.6 | 6.5 | 6.4 | 6.5 | 6.4 | 6.6 | 6.7 | 6.5 | 6.5 | 6.7 | 6.6 | 6.6 | 6.6 | 6.5 | 6.6 | 6.6 | 6.6 | 6.5 | 6.6 | 6.6 | 6.8 | 6.7 | 6.5 | 6.5 | 6.8 | 6.5 | 6.7 | 6.6 | 6.6 | 6.6 | 6.6 | 6.5 | 6.6 | 6.6 | 6.5 | 6.6 | 6.6 | 6.5 | 6.5 | 6.7 | 6.6 | 6.6 | 6.6 | 6.6 | 6.7 | 6.8 | 6.7 | 6.7 | 6.8 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.9 | 6.8 | 6.8 | 6.9 | 6.8 | 6.7 | 6.8 | 6.7 | 6.8 | 6.8 | 6.8 | 6.9 | 6.9 | 6.8 |
Percentage of 2-mers at each position of the read for each alignment quality interval. Numbers shown in bold corresponds to p-values of <= 1e-100.
| MAPQ >= 30 | MAPQ >= 20 | MAPQ >= 10 | MAPQ >= 3 | MAPQ < 3 |
| A | C | G | T | N |
| A | C | G | T | N |
| A | C | G | T | N |
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 | 75 | 76 | 77 | 78 | 79 | 80 | 81 | 82 | 83 | 84 | 85 | 86 | 87 | 88 | 89 | 90 | 91 | 92 | 93 | 94 | 95 | 96 | 97 | 98 | 99 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AG AA CT CA AT |
TT AA TG GG TC |
AA GG TT CA CT |
AA AG TG TT CT |
AA TT TG AG GA |
TT AA CT TG AG |
TT AA CT TG CA |
TT TG CT AA CA |
TT AA TG CA CT |
AA TT TG AG CA |
TT AA TG CA AG |
TT AA CA TG CT |
TT AA TG CA AG |
TT AA TG CA AG |
AA TT CA TG AG |
TT AA TG CA AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG CT |
TT AA TG CA AG |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA TG CA AG |
TT AA CA TG CT |
AA TT CA TG CT |
TT AA TG CA AG |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT TG CA AG |
AA CA TT TG AG |
AA TT CA TG AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT CA TG CT |
AA TT CA TG CT |
TT AA TG CA AG |
AA TT CA TG CT |
AA TT CA TG CT |
TT AA TG CA AG |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT CA TG CT |
AA TT CA TG CT |
TT AA TG CA AG |
AA TT CA TG CT |
AA TT CA TG CT |
TT AA TG CA AG |
AA TT CA TG CT |
AA TT CA TG CT |
TT AA TG CA AG |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG CT |
TT AA TG CA AG |
AA TT CA TG AG |
AA TT CA TG CT |
TT AA TG CA AG |
TT AA CA TG CT |
AA TT CA TG CT |
TT AA TG CA AG |
AA TT CA TG CT |
AA TT CA TG CT |
TT AA TG CA CT |
TT AA CA TG CT |
AA TT CA TG CT |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA TG CA AG |
TT AA CA TG GG |
TT AA CA TG CT |
TT AA TG CA GG |
TT AA CA TG GG |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 | 75 | 76 | 77 | 78 | 79 | 80 | 81 | 82 | 83 | 84 | 85 | 86 | 87 | 88 | 89 | 90 | 91 | 92 | 93 | 94 | 95 | 96 | 97 | 98 | 99 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
GG CT AG CA AA |
GG TT TG AA TC |
GG CA CT AA TT |
GG AG AA CA TG |
AA TG GG GA AG |
TT CA AG AA CT |
TT TG CT AA CA |
TT TG CT CA AA |
CA TT TG AA CT |
AA TT TG AG CA |
TT CA AA AG TG |
CA TT TG AG AA |
TT AA AG CA GG |
TT TG AA AG CA |
TG TT CA AG AA |
CA TG TT GG AG |
TG CA TT AA AG |
TG CA AG GG AA |
CA TT AG GG TG |
TG TT AG CA AA |
CA TG TT AG GG |
CA TT TG AA AG |
TT TG AA CA AG |
TT TG CA AA AG |
TG AA CA TT AG |
TG AG TT CA AA |
TG CA AG TT AA |
TG AA TT CA AG |
TG AG TT CA AA |
CA TG TT AG AA |
AA CA TT TG AG |
TT AG CA TG AA |
TG CA TT AG CC |
CA TT GG TG AG |
GG TG CA TT AG |
CA TG CC GG TT |
CA TG CT AA CC |
TG CA TT AA AG |
CA TG CT AA AG |
CA TG AA TT CT |
TT TG CA CT AG |
TG GG CA AG TT |
CA TT TG AA AG |
TG TT CT GG AG |
TG CA GG TT CT |
CA GG TG AA AG |
TT TG AG GG AA |
TG TT CA CT CC |
TT CT TG CA GG |
TG TT CT CA AG |
CA TG TT CT AA |
CA TG CT AA CC |
TG CT TT CA AA |
TG CA AA CC CT |
CA CT GG TG AA |
TG AG CT TT CA |
TG CA CC CT TT |
TG CT CA TT AG |
TG TT CC CT CA |
TG CA CT CC TT |
CA TG GG AA CT |
TG AG GG CT CA |
TG CA GG CT CC |
TG CT AA CA AG |
TG GG CA CT TT |
TG GG CA CT AG |
GG CA AA TG CT |
TG AG CA GG CT |
CA TG CT GG CC |
GG CA CT TG AA |
GG TG AA CT CA |
CA TG GG AA CT |
GG CA TG CT AG |
TG GG CA CT AA |
CA GG TG CT CC |
CA GG AA CT TT |
CA TG CT TT GG |
CA CC CT TG TT |
CA AA CT TG CC |
CT TG CC GG CA |
CA TG GG CC CT |
CA GG CT TG CC |
CT GG TG CA TT |
GG TG CA CC AG |
GG TG CA CT TT |
GG TG TT CT CC |
GG TG CA CT CC |
GG CA CC TT TG |
GG TG CT CA CC |
GG TG CC CA CT |
GG CC TG CA AA |
GG CC TT CA AA |
GG CC CA TG CT |
GG AG CA CC TT |
GG CC TT CA AA |
GG CC TG CA TT |
GG CC TT CT CA |
GG CC TT CT TG |
GG CC CA TG TT |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 | 75 | 76 | 77 | 78 | 79 | 80 | 81 | 82 | 83 | 84 | 85 | 86 | 87 | 88 | 89 | 90 | 91 | 92 | 93 | 94 | 95 | 96 | 97 | 98 | 99 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
GG AG CT CA CC |
GG TT TG GC GA |
GG CC CA TT TG |
GG AG TG CA TT |
GG TG GC AG TT |
GG TT TG CC CT |
TT GG TG CC GC |
TT TG CC CT GG |
TG TT CA GG CC |
GG TG AG AA TT |
GG GC CC TG AG |
GG TG CA CC TT |
GG TG TT CA CC |
GG TG CC TT AG |
GG TG CC CA TT |
GG TG CA CC AG |
GG TG CC CA AG |
GG TG CC AG CA |
GG CC TG CA GC |
GG TG CC AG CA |
GG TG CC CA AG |
GG CC TG CA CT |
GG CC TG TT CA |
GG CC TG CA CT |
GG TG CC CA CT |
GG TG CC AG GC |
GG CC TG CA GC |
GG CC TG AG CA |
GG CC TG GC AG |
GG TG CC CA AG |
GG TG AG CA CC |
GG TG CC AG GC |
GG TG CC CA AG |
GG CC CA TG AG |
GG CC TG GC AG |
GG CC TG CA GC |
GG CC CA TG CT |
GG TG CC AG CA |
GG CC TG CA GC |
GG TG CC CA CT |
GG CC TG GC AG |
GG TG CC CA GC |
GG CC TG CA GC |
GG CC TG GC AG |
GG TG CC CA GC |
GG CC GC TG CA |
GG CC TG GC AG |
GG CC TG CA AG |
GG CC TG GC AG |
GG CC TG GC CA |
GG CC TG CA GC |
GG CC TG CA GC |
GG CC TG GC AG |
GG CC TG CA GC |
GG TG CC CA GC |
GG CC TG GC AG |
GG CC TG GC CA |
GG CC TG CA GC |
GG CC TG GC CA |
GG CC TG CA GC |
GG CC TG CA CT |
GG CC TG GC AG |
GG CC TG GC AG |
GG CC TG CT CA |
GG CC TG AG GC |
GG CC TG GC AG |
GG CC TG GC CA |
GG CC TG AG GC |
GG CC TG GC CA |
GG CC GC TG CA |
GG CC TG GC CA |
GG CC TG CA GC |
GG CC CA TG GC |
GG CC TG GC CA |
GG CC TG CA GC |
GG CC TG CA GC |
GG CC TG GC CA |
GG CC TG CA GC |
GG CC TG CA GC |
GG CC GC TG TT |
GG CC GC TG CA |
GG CC CA TG GC |
GG CC TG GC TT |
GG CC TG CA GC |
GG CC CA GC TG |
GG CC GC TG TT |
GG CC GC TG CA |
GG CC CA GC TT |
GG CC TT GC TG |
GG CC TG CA GC |
GG CC CA TG GC |
GG CC GC CA TT |
GG CC CA GC TG |
GG CC CA TT GC |
GG CC GC TT TG |
GG CC CA TG TT |
GG CC TT CA GC |
GG CC GC TT CA |
GG CC TG TT GC |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| MAPQ >= 30 | MAPQ >= 20 | MAPQ < 3 | ||||||
|---|---|---|---|---|---|---|---|---|
| Seqence | Count | P-value | Seqence | Count | P-value | Seqence | Count | P-value |
| TGGGATTACA | 553266 | 0.0e+00 | CTCCTGCCTC | 36090 | 0.0e+00 | TTTTTTTTTT | 2965815 | 0.0e+00 |
| GCTGGGATTA | 540801 | 0.0e+00 | TCCTGCCTCA | 34664 | 0.0e+00 | AAAAAAAAAA | 2437656 | 0.0e+00 |
| CTCAGCCTCC | 529683 | 0.0e+00 | CCTAGCCATG | 30871 | 0.0e+00 | GGGGGGGGGG | 1582930 | 0.0e+00 |
| CTGGGATTAC | 516469 | 0.0e+00 | CTAAGCCTCC | 29029 | 0.0e+00 | CCCCCCCCCC | 560637 | 0.0e+00 |
| TAATCCCAGC | 502227 | 0.0e+00 | TAAGCCTCCT | 29002 | 0.0e+00 | GGCGGGGGGG | 276389 | 0.0e+00 |
| CCTGTAATCC | 502012 | 0.0e+00 | GGCACAGCTC | 28993 | 0.0e+00 | GGGGGGGGGC | 272747 | 0.0e+00 |
| GGAGGCTGAG | 478814 | 0.0e+00 | TCTAAGCCTC | 28931 | 0.0e+00 | CGGGGGGGGG | 268292 | 0.0e+00 |
| GAGGCTGAGG | 472988 | 0.0e+00 | AAGCCTCCTT | 28862 | 0.0e+00 | GCGGGGGGGG | 244119 | 0.0e+00 |
| CCCAGGCTGG | 446534 | 0.0e+00 | CTCTAAGCCT | 28798 | 0.0e+00 | ACACACACAC | 220220 | 0.0e+00 |
| GCCTCCCAAA | 437275 | 0.0e+00 | AGGCACAGCT | 28760 | 0.0e+00 | CACACACACA | 219410 | 0.0e+00 |
| GCCTCAGCCT | 422332 | 0.0e+00 | GCTCTAAGCC | 28623 | 0.0e+00 | TGTGTGTGTG | 213315 | 0.0e+00 |
| TCCCAAAGTG | 419307 | 0.0e+00 | AGCTCTAAGC | 28604 | 0.0e+00 | GTGTGTGTGT | 212349 | 0.0e+00 |
| TTTGTATTTT | 394390 | 0.0e+00 | CAGCTCTAAG | 28515 | 0.0e+00 | TTTTTTTTTG | 192363 | 0.0e+00 |
| CCAAAGTGCT | 392272 | 0.0e+00 | ACAGCTCTAA | 28366 | 0.0e+00 | CTTTTTTTTT | 192259 | 0.0e+00 |
| CAAAGTGCTG | 387526 | 0.0e+00 | GCACAGCTCT | 28345 | 0.0e+00 | TGGGGGGGGG | 185474 | 0.0e+00 |
| CCCAAAGTGC | 383125 | 0.0e+00 | CACAGCTCTA | 28332 | 0.0e+00 | GGGGCGGGGG | 166765 | 0.0e+00 |
| TTTTGTATTT | 382178 | 0.0e+00 | TGGAGTCCTA | 28131 | 0.0e+00 | GGCTGGGGGG | 160226 | 0.0e+00 |
| AGTGCTGGGA | 380125 | 0.0e+00 | CCTCCTCGGA | 28106 | 0.0e+00 | GGGGGCGGGG | 160007 | 0.0e+00 |
| AAAATACAAA | 380071 | 0.0e+00 | AGCCTCCTTA | 28056 | 0.0e+00 | GGGCGGGGGG | 156161 | 0.0e+00 |
| TTTGGGAGGC | 379603 | 0.0e+00 | CTGGAGTCCT | 28050 | 0.0e+00 | TTTTTTTTTA | 156124 | 0.0e+00 |