Number of alignments in various mapping quality (MAPQ) intervals and number of unmapped sequences. The percentage and number of alignments in each category is given in brackets.
Mean base quality of reads with low and high mapping quality.
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mer | Q | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AA | MAPQ >= 30 | 12.6 | 10.5 | 10.1 | 9.6 | 10.2 | 10.2 | 10.3 | 9.7 | 9.5 | 9.9 | 9.9 | 9.8 | 9.7 | 9.5 | 9.4 | 9.2 | 9.2 | 9.1 | 9.1 | 9.1 | 9.1 | 9.1 | 9.1 | 9.1 | 9.2 | 9.1 | 9.1 | 9.1 | 9.1 | 9.1 | 9.0 | 9.0 | 9.0 | 9.0 | 9.0 | 9.0 | 9.0 | 9.0 | 9.0 | 9.0 | 9.9 | 9.9 | 8.9 | 8.9 | 8.9 | 9.0 | 8.9 | 9.0 | 9.0 | 9.0 | 9.0 | 9.0 | 8.9 | 9.0 | 8.9 | 8.9 | 8.9 | 8.9 | 8.9 | 8.9 | 8.9 | 8.9 | 8.9 | 9.0 | 8.9 | 8.9 | 8.9 | 9.0 | 9.0 | 9.0 | 8.9 | 9.0 | 9.0 | 9.0 |
| AA | MAPQ >= 20 | 12.4 | 10.4 | 9.7 | 9.0 | 9.9 | 10.0 | 10.0 | 9.3 | 8.9 | 9.6 | 9.9 | 9.6 | 9.3 | 9.1 | 9.3 | 9.2 | 8.8 | 8.7 | 8.6 | 8.7 | 8.8 | 8.7 | 8.8 | 8.8 | 9.1 | 9.0 | 8.8 | 8.8 | 8.8 | 8.8 | 8.8 | 8.5 | 8.7 | 8.8 | 8.6 | 8.7 | 8.8 | 8.8 | 8.7 | 8.7 | 10.5 | 10.3 | 8.6 | 8.6 | 8.6 | 8.8 | 8.8 | 8.9 | 9.2 | 8.9 | 8.9 | 9.1 | 8.7 | 8.9 | 9.0 | 9.0 | 9.0 | 8.8 | 8.9 | 9.1 | 9.1 | 9.3 | 9.1 | 9.2 | 9.3 | 9.0 | 9.2 | 9.2 | 9.2 | 9.2 | 8.9 | 8.8 | 8.8 | 8.7 |
| AA | MAPQ >= 10 | 11.2 | 9.5 | 8.6 | 7.8 | 9.0 | 9.0 | 8.9 | 8.1 | 8.0 | 8.9 | 9.1 | 8.7 | 8.3 | 7.9 | 8.0 | 8.4 | 7.9 | 7.8 | 7.6 | 7.8 | 7.8 | 7.8 | 7.9 | 7.9 | 8.3 | 8.0 | 7.8 | 7.9 | 7.8 | 7.7 | 7.7 | 7.5 | 7.7 | 8.0 | 7.7 | 7.9 | 8.1 | 8.0 | 8.0 | 7.9 | 9.1 | 8.9 | 7.7 | 7.9 | 7.7 | 8.2 | 8.1 | 7.9 | 8.2 | 8.3 | 8.2 | 8.3 | 8.0 | 8.2 | 8.1 | 8.3 | 8.5 | 8.2 | 8.3 | 8.6 | 8.6 | 8.9 | 8.6 | 8.6 | 8.6 | 8.5 | 8.8 | 8.8 | 8.7 | 8.8 | 8.7 | 9.0 | 9.1 | 9.0 |
| AA | MAPQ >= 3 | 10.9 | 9.2 | 8.6 | 8.0 | 8.9 | 8.9 | 8.9 | 8.5 | 9.1 | 9.4 | 9.3 | 9.1 | 8.5 | 8.4 | 8.1 | 8.6 | 8.2 | 7.9 | 7.7 | 7.9 | 7.9 | 8.1 | 7.8 | 7.7 | 8.1 | 7.7 | 7.8 | 7.8 | 8.0 | 8.0 | 8.2 | 8.1 | 8.2 | 8.3 | 8.1 | 8.1 | 8.5 | 8.4 | 8.1 | 8.0 | 9.1 | 9.1 | 7.7 | 7.8 | 8.0 | 8.7 | 8.6 | 8.6 | 8.4 | 8.5 | 8.5 | 8.5 | 8.4 | 8.4 | 8.4 | 8.5 | 8.5 | 8.3 | 8.2 | 8.5 | 8.6 | 9.0 | 9.0 | 8.9 | 8.6 | 8.6 | 8.8 | 8.8 | 8.9 | 9.1 | 8.9 | 9.0 | 9.2 | 8.9 |
| AA | MAPQ < 3 | 12.1 | 10.4 | 9.5 | 8.6 | 9.6 | 9.8 | 9.8 | 9.0 | 8.7 | 9.5 | 9.9 | 9.6 | 9.3 | 9.0 | 9.2 | 9.3 | 8.8 | 8.7 | 8.4 | 8.7 | 8.7 | 8.6 | 8.8 | 8.8 | 9.0 | 8.9 | 8.7 | 8.9 | 8.8 | 8.7 | 8.9 | 8.6 | 8.7 | 8.8 | 8.6 | 8.8 | 8.9 | 8.9 | 8.8 | 8.8 | 9.5 | 9.4 | 8.6 | 8.7 | 8.6 | 8.9 | 8.8 | 8.6 | 8.8 | 8.8 | 8.8 | 8.9 | 8.7 | 8.9 | 8.9 | 9.0 | 9.0 | 8.9 | 8.9 | 9.0 | 9.0 | 9.2 | 9.0 | 9.1 | 9.1 | 9.0 | 9.3 | 9.3 | 9.2 | 9.3 | 9.0 | 9.1 | 9.2 | 9.0 |
| AA | Unmapped | 14.1 | 11.5 | 10.1 | 9.2 | 11.0 | 11.4 | 16.4 | 10.2 | 9.6 | 10.6 | 11.2 | 10.9 | 10.6 | 10.5 | 11.1 | 10.9 | 10.6 | 10.2 | 9.8 | 10.4 | 10.7 | 10.4 | 10.2 | 15.1 | 11.0 | 11.1 | 10.6 | 10.4 | 10.1 | 10.6 | 10.9 | 10.5 | 10.3 | 10.1 | 10.5 | 10.7 | 10.6 | 10.5 | 10.2 | 10.7 | 8.5 | 8.3 | 10.4 | 10.1 | 10.5 | 10.7 | 9.9 | 9.7 | 10.5 | 10.4 | 10.5 | 10.5 | 10.1 | 9.9 | 10.2 | 10.4 | 10.2 | 9.9 | 9.5 | 9.9 | 10.1 | 9.8 | 9.5 | 9.2 | 9.5 | 9.6 | 14.3 | 14.2 | 13.9 | 14.1 | 13.9 | 13.2 | 12.6 | 11.9 |
| AC | MAPQ >= 30 | 5.1 | 4.7 | 5.1 | 5.2 | 5.7 | 5.2 | 5.3 | 4.9 | 4.8 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 4.3 | 6.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 |
| AC | MAPQ >= 20 | 5.2 | 4.7 | 5.0 | 5.1 | 5.6 | 5.0 | 5.2 | 4.8 | 4.8 | 4.8 | 4.8 | 5.1 | 5.0 | 5.1 | 5.2 | 5.2 | 5.1 | 5.3 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 4.9 | 5.2 | 5.0 | 4.9 | 5.0 | 5.1 | 5.1 | 5.2 | 5.0 | 5.2 | 4.9 | 5.2 | 5.1 | 5.2 | 5.2 | 5.2 | 3.6 | 7.1 | 5.2 | 4.9 | 5.2 | 5.0 | 5.1 | 4.9 | 5.1 | 5.3 | 5.1 | 5.2 | 5.0 | 5.1 | 5.4 | 5.5 | 5.1 | 5.2 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 4.9 |
| AC | MAPQ >= 10 | 4.8 | 4.3 | 4.8 | 4.8 | 5.4 | 4.8 | 5.1 | 4.5 | 4.6 | 4.7 | 4.8 | 4.8 | 5.0 | 5.1 | 5.1 | 5.0 | 5.1 | 4.9 | 4.7 | 4.9 | 5.1 | 4.8 | 4.8 | 4.7 | 4.9 | 4.9 | 4.8 | 4.7 | 4.7 | 5.0 | 4.9 | 5.1 | 4.9 | 4.9 | 4.8 | 5.0 | 4.9 | 4.9 | 5.0 | 4.9 | 4.3 | 6.2 | 4.9 | 4.7 | 4.9 | 4.7 | 5.0 | 4.7 | 5.0 | 5.1 | 4.8 | 5.1 | 4.8 | 4.9 | 5.0 | 5.0 | 5.0 | 5.2 | 5.2 | 5.2 | 5.4 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 4.9 | 5.0 | 5.0 | 4.9 | 5.0 | 4.9 | 4.9 | 5.1 |
| AC | MAPQ >= 3 | 4.8 | 4.5 | 5.0 | 5.2 | 5.6 | 5.1 | 5.4 | 4.7 | 5.1 | 5.0 | 5.4 | 5.2 | 5.2 | 5.2 | 5.5 | 5.1 | 5.4 | 5.2 | 5.0 | 5.1 | 5.5 | 5.2 | 5.2 | 5.1 | 5.3 | 5.3 | 5.2 | 5.1 | 5.1 | 5.3 | 5.2 | 5.5 | 5.2 | 5.2 | 5.0 | 5.4 | 5.1 | 5.4 | 5.3 | 5.1 | 4.5 | 6.4 | 5.2 | 5.1 | 5.1 | 5.1 | 5.3 | 5.1 | 5.3 | 5.1 | 5.1 | 5.4 | 4.9 | 5.1 | 5.0 | 5.0 | 5.2 | 5.4 | 5.3 | 5.3 | 5.4 | 5.2 | 5.3 | 5.3 | 5.4 | 5.3 | 5.1 | 5.3 | 5.2 | 5.0 | 5.3 | 5.0 | 5.4 | 5.3 |
| AC | MAPQ < 3 | 4.8 | 4.4 | 4.9 | 4.9 | 5.3 | 4.8 | 5.1 | 4.6 | 4.7 | 4.7 | 4.8 | 4.8 | 4.9 | 4.9 | 5.0 | 4.9 | 5.1 | 5.0 | 4.9 | 4.9 | 4.9 | 4.8 | 4.9 | 4.8 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 5.0 | 4.9 | 5.0 | 4.9 | 4.9 | 4.9 | 5.0 | 4.9 | 5.0 | 5.1 | 5.0 | 4.2 | 5.8 | 5.0 | 4.8 | 5.0 | 4.9 | 5.0 | 4.9 | 5.0 | 5.1 | 4.9 | 5.1 | 4.9 | 5.0 | 5.0 | 5.1 | 5.0 | 5.2 | 5.2 | 5.2 | 5.1 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 4.9 | 5.0 | 4.9 | 4.9 | 4.9 | 4.9 | 5.0 | 5.0 |
| AC | Unmapped | 5.0 | 4.2 | 4.4 | 4.2 | 5.0 | 4.4 | 4.4 | 4.5 | 4.1 | 4.2 | 4.3 | 4.4 | 4.4 | 4.1 | 4.8 | 4.5 | 4.5 | 4.7 | 4.5 | 4.5 | 4.5 | 4.6 | 4.4 | 4.2 | 4.1 | 4.9 | 4.5 | 4.5 | 4.4 | 4.5 | 4.6 | 4.6 | 9.3 | 4.5 | 4.4 | 4.5 | 4.4 | 4.4 | 4.4 | 4.4 | 3.4 | 3.6 | 4.4 | 4.2 | 4.4 | 4.2 | 4.0 | 3.7 | 4.4 | 4.3 | 4.1 | 4.1 | 4.1 | 4.0 | 4.3 | 4.4 | 4.1 | 4.2 | 4.1 | 4.1 | 4.1 | 4.0 | 3.9 | 3.8 | 3.8 | 3.9 | 3.7 | 3.7 | 3.5 | 3.7 | 3.6 | 3.8 | 3.5 | 3.5 |
| AG | MAPQ >= 30 | 10.5 | 7.3 | 7.1 | 7.9 | 7.8 | 7.4 | 6.5 | 6.6 | 6.6 | 6.9 | 7.0 | 7.0 | 7.0 | 7.1 | 7.2 | 7.2 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.2 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.4 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.4 | 7.4 | 7.4 | 7.3 | 7.4 | 7.3 | 6.1 | 7.9 | 7.3 | 7.4 | 7.3 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 | 7.4 | 7.3 | 7.4 | 7.4 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.4 | 7.4 | 7.4 | 7.3 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 | 7.4 | 7.4 |
| AG | MAPQ >= 20 | 10.4 | 7.1 | 6.8 | 7.6 | 7.4 | 7.1 | 6.4 | 6.4 | 6.3 | 6.6 | 7.0 | 6.6 | 6.8 | 6.9 | 6.8 | 6.9 | 7.2 | 7.0 | 6.9 | 6.9 | 6.9 | 6.9 | 7.2 | 7.0 | 7.2 | 7.3 | 7.0 | 7.4 | 7.1 | 7.3 | 7.0 | 7.1 | 7.4 | 6.9 | 7.4 | 7.1 | 7.0 | 7.0 | 6.9 | 7.0 | 4.9 | 8.1 | 6.8 | 7.2 | 6.9 | 7.0 | 7.0 | 7.2 | 7.4 | 7.1 | 7.1 | 6.8 | 7.0 | 7.0 | 7.3 | 6.8 | 7.0 | 7.0 | 6.9 | 7.1 | 6.9 | 7.0 | 7.0 | 6.9 | 7.0 | 7.3 | 6.9 | 7.1 | 7.0 | 7.2 | 7.7 | 7.6 | 7.2 | 7.2 |
| AG | MAPQ >= 10 | 10.3 | 6.9 | 6.4 | 7.4 | 7.3 | 6.8 | 6.2 | 6.1 | 6.1 | 6.6 | 6.7 | 6.5 | 6.5 | 6.7 | 6.6 | 6.5 | 6.6 | 7.0 | 6.7 | 6.8 | 6.8 | 6.7 | 7.4 | 6.9 | 7.1 | 7.2 | 6.8 | 7.3 | 7.0 | 7.2 | 6.5 | 6.8 | 6.8 | 6.6 | 6.8 | 6.9 | 6.8 | 6.6 | 6.6 | 6.8 | 5.6 | 7.5 | 6.5 | 7.0 | 6.7 | 6.8 | 7.0 | 6.8 | 7.0 | 6.9 | 6.9 | 6.6 | 6.9 | 7.0 | 7.1 | 6.7 | 6.7 | 6.8 | 6.6 | 6.9 | 6.8 | 6.8 | 6.7 | 6.7 | 6.8 | 6.8 | 6.9 | 7.0 | 6.9 | 6.9 | 7.0 | 7.2 | 7.0 | 7.0 |
| AG | MAPQ >= 3 | 10.1 | 6.8 | 6.3 | 7.2 | 7.3 | 6.8 | 6.5 | 6.1 | 6.3 | 6.8 | 7.0 | 6.9 | 6.9 | 6.9 | 7.0 | 6.9 | 7.2 | 7.5 | 6.9 | 7.0 | 7.0 | 7.1 | 7.7 | 7.2 | 6.9 | 7.1 | 6.9 | 7.1 | 7.1 | 7.2 | 6.7 | 7.3 | 7.2 | 6.8 | 7.1 | 6.8 | 6.8 | 6.8 | 6.7 | 6.7 | 5.3 | 7.3 | 6.4 | 6.8 | 6.6 | 6.8 | 7.1 | 6.9 | 7.4 | 7.0 | 6.9 | 7.0 | 6.8 | 7.5 | 7.1 | 7.1 | 6.7 | 7.0 | 6.9 | 7.0 | 7.0 | 6.7 | 7.0 | 6.9 | 7.0 | 7.1 | 7.1 | 7.0 | 7.0 | 7.0 | 7.6 | 7.3 | 7.1 | 6.7 |
| AG | MAPQ < 3 | 9.8 | 6.7 | 6.6 | 7.3 | 7.1 | 6.8 | 6.1 | 6.0 | 6.1 | 6.4 | 6.6 | 6.5 | 6.6 | 6.7 | 6.6 | 6.7 | 6.7 | 6.9 | 6.5 | 6.5 | 6.6 | 6.6 | 6.9 | 6.6 | 6.6 | 6.7 | 6.7 | 6.9 | 6.8 | 6.7 | 6.5 | 6.8 | 6.7 | 6.7 | 6.7 | 6.7 | 6.6 | 6.7 | 6.5 | 6.7 | 5.6 | 7.1 | 6.5 | 6.7 | 6.6 | 6.6 | 6.7 | 6.6 | 6.9 | 6.6 | 6.8 | 6.5 | 6.7 | 6.7 | 6.8 | 6.6 | 6.6 | 6.7 | 6.6 | 6.8 | 6.6 | 6.7 | 6.6 | 6.6 | 6.7 | 6.8 | 6.6 | 6.9 | 6.7 | 6.8 | 7.0 | 6.9 | 6.8 | 6.7 |
| AG | Unmapped | 9.0 | 5.9 | 5.8 | 5.9 | 6.3 | 6.1 | 5.8 | 10.5 | 5.3 | 10.7 | 6.0 | 5.8 | 6.0 | 6.4 | 6.1 | 6.0 | 6.0 | 11.0 | 5.9 | 5.9 | 11.1 | 6.0 | 6.1 | 5.9 | 6.4 | 6.4 | 6.0 | 6.3 | 6.1 | 6.1 | 11.0 | 6.0 | 6.1 | 6.1 | 6.2 | 6.1 | 5.9 | 6.1 | 10.9 | 6.1 | 9.1 | 4.7 | 6.0 | 6.0 | 5.9 | 6.0 | 5.7 | 5.7 | 6.4 | 6.2 | 6.3 | 6.0 | 6.2 | 6.1 | 6.3 | 6.4 | 6.4 | 6.5 | 6.5 | 6.7 | 6.7 | 7.0 | 7.0 | 7.0 | 7.3 | 7.5 | 7.5 | 7.8 | 7.8 | 8.0 | 8.4 | 8.6 | 8.5 | 8.6 |
| AT | MAPQ >= 30 | 12.8 | 8.1 | 9.6 | 7.6 | 8.0 | 8.0 | 8.3 | 7.9 | 7.3 | 7.5 | 7.4 | 7.4 | 7.3 | 7.2 | 7.3 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.1 | 7.1 | 7.1 | 7.0 | 7.1 | 7.1 | 7.0 | 7.1 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.1 | 7.1 | 7.1 | 7.1 | 5.8 | 8.4 | 7.1 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 6.9 | 7.0 | 7.0 | 6.9 | 7.0 | 7.0 | 7.0 | 7.0 | 6.9 | 7.0 | 7.0 | 6.9 | 7.0 | 7.0 | 7.0 | 6.9 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 |
| AT | MAPQ >= 20 | 13.0 | 8.3 | 9.4 | 7.7 | 7.7 | 8.5 | 8.6 | 7.9 | 7.3 | 7.3 | 7.7 | 7.8 | 7.5 | 7.3 | 7.3 | 7.6 | 7.2 | 7.4 | 7.5 | 7.3 | 7.5 | 7.4 | 7.2 | 7.4 | 7.0 | 7.3 | 7.3 | 7.1 | 7.3 | 7.1 | 7.2 | 7.3 | 7.0 | 7.3 | 6.9 | 7.2 | 7.4 | 7.2 | 7.2 | 7.3 | 5.0 | 9.6 | 7.1 | 6.9 | 7.2 | 7.1 | 7.2 | 6.8 | 6.8 | 7.4 | 7.0 | 7.2 | 7.2 | 6.8 | 6.8 | 7.7 | 7.1 | 7.2 | 6.9 | 7.2 | 7.3 | 7.0 | 7.3 | 7.1 | 7.2 | 7.1 | 7.2 | 7.3 | 7.0 | 7.3 | 7.2 | 7.7 | 7.7 | 7.5 |
| AT | MAPQ >= 10 | 12.4 | 8.4 | 9.2 | 7.5 | 7.3 | 8.3 | 8.5 | 7.6 | 7.0 | 6.9 | 8.0 | 7.9 | 7.3 | 7.3 | 7.0 | 7.5 | 7.5 | 7.2 | 7.4 | 7.3 | 7.3 | 7.2 | 7.0 | 7.4 | 6.9 | 7.1 | 7.3 | 7.2 | 7.3 | 7.2 | 7.1 | 7.3 | 7.3 | 7.3 | 7.1 | 7.1 | 7.5 | 7.4 | 7.3 | 7.4 | 6.1 | 8.6 | 7.2 | 7.0 | 7.4 | 7.2 | 7.4 | 7.0 | 6.9 | 7.6 | 7.3 | 7.1 | 7.3 | 6.8 | 7.5 | 7.3 | 7.1 | 7.5 | 6.9 | 7.2 | 7.4 | 7.1 | 7.4 | 7.1 | 7.0 | 7.2 | 6.9 | 7.4 | 6.8 | 6.9 | 7.2 | 7.2 | 7.4 | 7.1 |
| AT | MAPQ >= 3 | 12.2 | 8.1 | 9.0 | 7.3 | 7.5 | 7.7 | 7.9 | 7.3 | 6.5 | 7.1 | 7.2 | 7.3 | 7.0 | 6.8 | 6.7 | 6.9 | 7.0 | 6.9 | 6.7 | 6.9 | 6.8 | 6.9 | 6.9 | 6.7 | 6.6 | 7.0 | 6.6 | 7.0 | 6.8 | 6.7 | 6.9 | 6.9 | 6.9 | 6.9 | 6.8 | 7.0 | 7.0 | 7.3 | 7.1 | 7.2 | 5.8 | 8.4 | 6.9 | 6.7 | 6.6 | 6.7 | 6.6 | 6.8 | 6.8 | 7.1 | 6.8 | 6.8 | 6.7 | 6.6 | 6.9 | 6.8 | 7.1 | 7.2 | 6.8 | 6.9 | 7.0 | 6.9 | 7.0 | 6.9 | 6.9 | 6.8 | 6.7 | 7.0 | 6.6 | 6.8 | 7.1 | 7.0 | 7.1 | 7.1 |
| AT | MAPQ < 3 | 13.5 | 9.0 | 9.9 | 8.0 | 8.1 | 9.0 | 9.1 | 8.3 | 7.6 | 7.5 | 8.4 | 8.1 | 7.8 | 7.7 | 7.4 | 8.1 | 7.9 | 7.7 | 8.0 | 7.8 | 8.0 | 8.1 | 7.6 | 8.2 | 7.7 | 7.7 | 8.0 | 7.8 | 7.9 | 7.8 | 7.7 | 8.1 | 7.9 | 7.8 | 7.7 | 7.7 | 8.1 | 7.8 | 7.8 | 7.8 | 6.4 | 8.9 | 7.8 | 7.6 | 8.0 | 7.8 | 8.1 | 7.6 | 7.5 | 8.1 | 7.9 | 7.7 | 7.9 | 7.5 | 8.0 | 7.9 | 7.7 | 8.0 | 7.6 | 7.8 | 7.9 | 7.5 | 7.8 | 7.6 | 7.8 | 7.7 | 7.6 | 8.0 | 7.6 | 7.8 | 7.9 | 7.7 | 8.0 | 7.7 |
| AT | Unmapped | 15.1 | 14.4 | 10.3 | 7.7 | 8.6 | 9.8 | 9.5 | 9.4 | 7.9 | 7.9 | 8.9 | 8.7 | 8.3 | 7.2 | 8.2 | 8.7 | 8.3 | 8.1 | 7.6 | 7.5 | 8.3 | 8.6 | 7.8 | 7.5 | 11.9 | 8.8 | 8.2 | 7.8 | 7.4 | 7.4 | 8.4 | 8.3 | 7.8 | 7.5 | 7.2 | 8.3 | 8.1 | 7.7 | 7.3 | 7.3 | 6.2 | 6.6 | 12.8 | 7.2 | 7.5 | 8.2 | 7.7 | 7.0 | 7.6 | 12.5 | 8.2 | 8.0 | 7.8 | 7.2 | 7.4 | 8.5 | 8.2 | 7.9 | 7.5 | 7.5 | 8.4 | 8.1 | 7.9 | 7.4 | 7.5 | 8.2 | 8.1 | 7.8 | 7.3 | 7.4 | 8.0 | 8.2 | 7.4 | 6.9 |
| CA | MAPQ >= 30 | 8.0 | 5.1 | 7.0 | 7.8 | 7.0 | 7.6 | 6.5 | 7.3 | 7.5 | 7.4 | 7.2 | 7.3 | 7.4 | 7.4 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.5 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 8.1 | 6.2 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.7 | 7.6 | 7.5 | 7.6 | 7.5 | 7.6 | 7.7 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 |
| CA | MAPQ >= 20 | 8.1 | 5.2 | 7.0 | 7.7 | 7.3 | 7.8 | 6.5 | 7.3 | 7.6 | 7.8 | 7.3 | 7.2 | 7.5 | 7.6 | 7.7 | 7.5 | 7.6 | 7.4 | 7.8 | 7.8 | 7.6 | 7.4 | 7.6 | 7.8 | 7.7 | 7.5 | 7.6 | 7.5 | 7.5 | 7.6 | 7.7 | 7.7 | 7.7 | 7.2 | 7.8 | 7.6 | 7.7 | 7.6 | 7.7 | 7.7 | 8.7 | 5.2 | 7.6 | 7.7 | 7.7 | 7.9 | 7.6 | 7.6 | 7.5 | 7.4 | 7.7 | 7.5 | 7.6 | 7.7 | 7.7 | 7.4 | 7.5 | 7.5 | 7.8 | 7.9 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.4 | 7.6 | 7.7 | 7.7 | 7.7 | 7.4 | 7.6 | 7.5 |
| CA | MAPQ >= 10 | 8.4 | 5.2 | 7.2 | 8.0 | 7.4 | 7.9 | 6.4 | 7.6 | 7.8 | 8.3 | 7.7 | 7.5 | 7.7 | 7.6 | 7.9 | 7.6 | 7.7 | 7.7 | 8.0 | 7.9 | 7.6 | 7.6 | 7.8 | 8.1 | 7.7 | 7.9 | 7.7 | 7.8 | 8.0 | 7.8 | 8.1 | 8.0 | 7.9 | 7.7 | 8.3 | 8.2 | 8.1 | 8.0 | 8.0 | 8.0 | 8.4 | 6.3 | 7.8 | 7.8 | 8.1 | 8.0 | 7.6 | 8.0 | 8.0 | 7.7 | 7.8 | 7.6 | 7.8 | 8.1 | 7.9 | 7.8 | 7.8 | 7.9 | 8.0 | 8.2 | 7.8 | 8.0 | 7.7 | 8.0 | 7.8 | 7.8 | 8.0 | 7.7 | 7.8 | 7.8 | 8.0 | 7.9 | 8.0 | 7.7 |
| CA | MAPQ >= 3 | 8.5 | 5.2 | 7.6 | 8.0 | 7.5 | 8.1 | 6.7 | 8.1 | 8.0 | 8.4 | 7.8 | 7.7 | 7.8 | 7.4 | 8.0 | 7.7 | 7.8 | 7.6 | 7.8 | 7.9 | 7.9 | 7.8 | 7.8 | 8.0 | 7.7 | 7.9 | 7.9 | 8.0 | 8.1 | 8.1 | 8.5 | 8.1 | 8.0 | 7.7 | 8.3 | 8.0 | 8.3 | 7.8 | 7.8 | 7.9 | 8.4 | 6.1 | 7.7 | 7.5 | 8.1 | 7.8 | 7.9 | 7.9 | 7.9 | 7.5 | 7.9 | 7.3 | 7.9 | 7.9 | 7.6 | 7.6 | 7.7 | 7.7 | 7.7 | 7.9 | 7.6 | 7.9 | 7.4 | 7.6 | 7.6 | 8.0 | 7.9 | 7.6 | 7.8 | 7.9 | 7.7 | 7.6 | 7.8 | 7.9 |
| CA | MAPQ < 3 | 8.3 | 5.3 | 7.2 | 8.0 | 7.5 | 8.1 | 6.6 | 7.6 | 7.8 | 8.2 | 7.6 | 7.5 | 7.5 | 7.6 | 7.9 | 7.7 | 7.5 | 7.7 | 7.9 | 7.8 | 7.8 | 7.6 | 7.7 | 7.8 | 7.6 | 7.8 | 7.9 | 7.7 | 7.8 | 7.8 | 8.1 | 7.9 | 7.9 | 7.7 | 7.9 | 8.0 | 7.9 | 7.7 | 7.9 | 7.8 | 8.2 | 6.3 | 7.7 | 7.9 | 7.9 | 7.9 | 7.6 | 7.8 | 8.0 | 7.8 | 7.8 | 7.6 | 7.8 | 7.9 | 7.9 | 7.7 | 7.9 | 7.8 | 8.0 | 8.1 | 7.8 | 7.8 | 7.7 | 7.8 | 7.8 | 7.8 | 8.0 | 7.7 | 7.8 | 7.7 | 7.8 | 7.8 | 7.8 | 7.7 |
| CA | Unmapped | 7.3 | 4.8 | 5.6 | 6.6 | 7.1 | 7.2 | 5.8 | 5.8 | 6.7 | 7.3 | 6.6 | 6.4 | 6.2 | 6.8 | 6.6 | 6.7 | 11.5 | 6.2 | 6.9 | 12.2 | 6.9 | 6.4 | 6.3 | 6.7 | 7.3 | 6.2 | 6.6 | 6.3 | 6.6 | 7.2 | 6.8 | 6.5 | 6.4 | 6.5 | 7.1 | 6.7 | 6.5 | 6.2 | 6.6 | 7.0 | 5.2 | 4.7 | 6.1 | 6.6 | 6.9 | 6.7 | 5.6 | 5.7 | 6.0 | 6.8 | 6.4 | 6.1 | 5.9 | 6.3 | 6.9 | 6.3 | 6.2 | 5.9 | 6.4 | 6.9 | 6.4 | 6.0 | 5.8 | 6.2 | 6.6 | 6.1 | 5.9 | 5.6 | 6.0 | 6.3 | 6.2 | 5.7 | 5.7 | 6.1 |
| CC | MAPQ >= 30 | 4.6 | 4.0 | 4.6 | 3.9 | 4.5 | 4.9 | 5.1 | 5.3 | 5.0 | 5.0 | 5.1 | 5.2 | 5.3 | 5.6 | 5.5 | 5.5 | 5.6 | 5.7 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.5 | 5.5 | 5.5 | 5.6 | 5.6 | 5.5 | 5.5 | 5.5 | 5.6 | 5.6 | 5.6 | 5.6 | 5.5 | 5.6 | 5.6 | 5.6 | 5.5 | 4.6 | 4.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.7 | 5.6 | 5.6 | 5.6 | 5.7 | 5.6 | 5.7 | 5.7 | 5.7 | 5.6 | 5.7 | 5.7 | 5.7 | 5.6 | 5.7 | 5.7 | 5.7 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 |
| CC | MAPQ >= 20 | 4.4 | 3.8 | 4.4 | 4.1 | 4.6 | 4.9 | 5.0 | 5.3 | 5.2 | 5.1 | 5.0 | 4.9 | 5.1 | 5.5 | 5.3 | 5.5 | 5.4 | 5.4 | 5.7 | 5.7 | 5.5 | 5.5 | 5.5 | 5.4 | 5.4 | 5.3 | 5.6 | 5.5 | 5.4 | 5.5 | 5.4 | 5.4 | 5.4 | 5.5 | 5.5 | 5.3 | 5.5 | 5.5 | 5.6 | 5.5 | 3.7 | 3.7 | 5.7 | 5.6 | 5.6 | 5.7 | 5.5 | 5.5 | 5.5 | 5.6 | 5.6 | 5.5 | 5.7 | 5.6 | 5.6 | 5.4 | 5.5 | 5.6 | 5.7 | 5.8 | 5.6 | 5.6 | 5.7 | 5.8 | 5.7 | 5.5 | 5.5 | 5.7 | 5.7 | 5.6 | 5.3 | 5.3 | 5.5 | 5.7 |
| CC | MAPQ >= 10 | 4.8 | 4.2 | 4.9 | 4.6 | 5.0 | 5.2 | 5.4 | 5.8 | 5.8 | 5.7 | 5.4 | 5.3 | 5.3 | 6.3 | 5.9 | 6.0 | 6.3 | 6.3 | 6.3 | 6.2 | 6.1 | 6.2 | 6.0 | 5.8 | 6.1 | 6.0 | 6.3 | 6.2 | 5.8 | 6.0 | 6.0 | 6.0 | 6.2 | 6.3 | 6.4 | 6.1 | 6.4 | 6.1 | 6.1 | 6.1 | 5.1 | 5.2 | 6.5 | 6.5 | 6.6 | 6.7 | 6.4 | 6.4 | 6.4 | 6.4 | 6.1 | 6.0 | 6.4 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.5 | 6.5 | 6.1 | 6.2 | 6.5 | 6.5 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.3 | 6.1 | 6.3 | 6.4 | 6.6 |
| CC | MAPQ >= 3 | 4.8 | 4.3 | 5.0 | 4.7 | 5.1 | 5.3 | 5.7 | 6.3 | 6.0 | 5.8 | 5.5 | 5.4 | 5.4 | 6.3 | 6.0 | 6.3 | 6.3 | 6.5 | 6.4 | 6.3 | 6.2 | 6.2 | 6.0 | 6.1 | 6.3 | 6.2 | 6.3 | 6.3 | 6.0 | 6.2 | 5.9 | 6.0 | 6.2 | 6.4 | 6.5 | 6.3 | 6.1 | 6.0 | 6.2 | 6.1 | 5.0 | 5.2 | 6.7 | 7.0 | 6.9 | 7.2 | 6.8 | 6.8 | 6.8 | 6.8 | 6.4 | 6.5 | 6.4 | 6.2 | 6.2 | 6.2 | 6.3 | 6.1 | 6.4 | 6.3 | 6.1 | 6.0 | 6.0 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.0 | 6.3 | 6.7 | 6.9 |
| CC | MAPQ < 3 | 4.6 | 3.8 | 4.6 | 4.4 | 4.8 | 4.9 | 5.1 | 5.4 | 5.4 | 5.2 | 5.1 | 5.0 | 5.1 | 5.7 | 5.6 | 5.5 | 5.6 | 5.7 | 5.7 | 5.6 | 5.6 | 5.5 | 5.5 | 5.5 | 5.6 | 5.5 | 5.6 | 5.5 | 5.4 | 5.6 | 5.5 | 5.4 | 5.5 | 5.6 | 5.7 | 5.5 | 5.5 | 5.4 | 5.5 | 5.6 | 4.5 | 4.5 | 5.7 | 5.8 | 5.7 | 5.7 | 5.7 | 5.8 | 5.7 | 5.6 | 5.6 | 5.5 | 5.7 | 5.6 | 5.6 | 5.6 | 5.5 | 5.6 | 5.7 | 5.7 | 5.6 | 5.6 | 5.7 | 5.7 | 5.6 | 5.7 | 5.6 | 5.6 | 5.6 | 5.5 | 5.6 | 5.6 | 5.7 | 5.8 |
| CC | Unmapped | 3.6 | 3.0 | 3.5 | 3.7 | 4.0 | 3.9 | 3.6 | 4.0 | 4.6 | 4.2 | 3.9 | 3.7 | 4.2 | 4.4 | 4.1 | 4.2 | 4.0 | 4.4 | 4.9 | 4.6 | 4.3 | 4.0 | 4.4 | 4.8 | 4.1 | 3.9 | 4.2 | 9.4 | 4.9 | 4.6 | 4.4 | 4.1 | 4.5 | 9.8 | 4.7 | 4.4 | 4.3 | 4.6 | 5.1 | 4.9 | 3.4 | 3.2 | 4.8 | 5.2 | 5.0 | 4.8 | 4.3 | 4.4 | 5.0 | 5.1 | 5.0 | 4.8 | 10.0 | 5.5 | 4.9 | 4.8 | 4.4 | 4.8 | 5.2 | 4.9 | 4.6 | 4.4 | 4.7 | 5.2 | 4.7 | 4.4 | 4.2 | 4.5 | 4.9 | 4.5 | 4.1 | 3.9 | 4.4 | 4.9 |
| CG | MAPQ >= 30 | 0.7 | 0.5 | 0.6 | 0.9 | 0.9 | 1.0 | 0.8 | 1.1 | 1.1 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.1 | 1.1 | 1.1 | 1.0 | 1.0 | 1.0 | 1.1 | 1.0 | 1.0 | 0.9 | 1.0 | 1.1 | 1.0 | 1.0 | 1.0 | 1.0 | 1.1 | 1.0 | 1.1 | 1.1 | 1.0 | 1.1 | 1.1 | 1.1 | 1.0 | 1.0 | 1.0 | 1.0 | 1.0 | 1.1 | 1.0 | 1.0 | 1.1 | 1.2 | 1.0 | 1.0 | 1.0 | 1.0 | 1.1 | 1.1 | 1.0 | 1.0 |
| CG | MAPQ >= 20 | 1.1 | 0.8 | 1.0 | 1.5 | 1.4 | 1.6 | 1.2 | 1.7 | 1.8 | 1.6 | 1.8 | 1.5 | 1.5 | 1.7 | 1.6 | 1.6 | 2.2 | 1.6 | 1.5 | 1.5 | 1.7 | 1.6 | 1.6 | 1.5 | 1.7 | 1.5 | 1.5 | 1.5 | 1.6 | 1.6 | 1.6 | 1.7 | 2.0 | 1.7 | 2.2 | 1.7 | 1.6 | 1.6 | 1.7 | 1.7 | 1.4 | 1.2 | 1.6 | 2.0 | 1.6 | 1.6 | 1.5 | 1.7 | 2.0 | 1.7 | 1.8 | 1.9 | 1.6 | 1.7 | 2.4 | 2.5 | 1.6 | 1.7 | 1.6 | 1.6 | 1.6 | 1.7 | 1.7 | 1.6 | 1.7 | 2.1 | 1.6 | 1.6 | 1.6 | 1.6 | 2.1 | 1.8 | 1.7 | 1.8 |
| CG | MAPQ >= 10 | 1.4 | 0.9 | 1.2 | 2.0 | 1.9 | 2.1 | 1.5 | 2.2 | 2.2 | 1.9 | 1.9 | 1.8 | 2.0 | 2.0 | 2.0 | 2.2 | 1.9 | 1.9 | 2.0 | 2.1 | 2.0 | 2.1 | 2.1 | 2.0 | 1.9 | 2.0 | 1.9 | 1.9 | 1.9 | 2.0 | 1.9 | 2.2 | 2.0 | 1.9 | 2.2 | 2.0 | 2.0 | 2.0 | 2.0 | 2.2 | 1.7 | 1.7 | 2.0 | 2.0 | 2.0 | 1.9 | 1.9 | 2.0 | 2.0 | 1.9 | 2.0 | 2.0 | 2.0 | 2.2 | 2.1 | 2.1 | 2.0 | 2.1 | 2.1 | 2.1 | 2.0 | 2.1 | 1.9 | 2.0 | 2.1 | 2.0 | 2.0 | 2.0 | 2.0 | 2.0 | 2.1 | 1.9 | 1.8 | 2.0 |
| CG | MAPQ >= 3 | 1.2 | 0.8 | 1.0 | 1.4 | 1.6 | 1.6 | 1.3 | 1.9 | 1.6 | 1.3 | 1.5 | 1.5 | 1.5 | 1.5 | 1.6 | 1.6 | 1.5 | 1.6 | 1.6 | 1.8 | 1.8 | 1.9 | 1.8 | 1.7 | 1.6 | 1.6 | 1.6 | 1.7 | 1.8 | 1.7 | 1.7 | 1.7 | 1.8 | 1.5 | 1.8 | 1.8 | 1.7 | 1.8 | 1.8 | 1.8 | 1.5 | 1.4 | 1.6 | 1.7 | 1.6 | 1.6 | 1.6 | 1.6 | 1.7 | 1.7 | 1.7 | 1.7 | 1.8 | 2.0 | 1.8 | 1.9 | 1.6 | 1.6 | 1.6 | 1.6 | 1.6 | 1.7 | 1.6 | 1.5 | 1.6 | 1.6 | 1.7 | 1.6 | 1.7 | 1.6 | 1.6 | 1.5 | 1.4 | 1.7 |
| CG | MAPQ < 3 | 1.2 | 0.8 | 1.0 | 1.7 | 1.5 | 1.7 | 1.2 | 1.8 | 1.9 | 1.7 | 1.6 | 1.6 | 1.6 | 1.8 | 1.7 | 1.7 | 1.7 | 1.6 | 1.7 | 1.7 | 1.7 | 1.8 | 1.7 | 1.7 | 1.7 | 1.8 | 1.7 | 1.6 | 1.7 | 1.7 | 1.7 | 1.8 | 1.7 | 1.7 | 1.9 | 1.8 | 1.7 | 1.7 | 1.8 | 1.8 | 1.5 | 1.4 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.8 | 1.8 | 1.7 | 1.7 | 1.7 | 1.8 | 1.8 | 1.8 | 1.8 | 1.6 | 1.7 | 1.7 | 1.7 | 1.7 | 1.8 | 1.7 | 1.7 | 1.8 | 1.8 | 1.7 | 1.7 | 1.7 | 1.7 | 1.8 | 1.6 | 1.6 | 1.7 |
| CG | Unmapped | 1.0 | 0.7 | 0.9 | 6.3 | 1.3 | 1.4 | 1.5 | 1.5 | 1.6 | 1.5 | 1.5 | 6.3 | 1.4 | 2.2 | 1.6 | 1.4 | 1.5 | 1.4 | 1.5 | 1.5 | 1.6 | 1.3 | 1.5 | 1.5 | 2.3 | 1.5 | 1.4 | 1.5 | 6.6 | 1.6 | 1.5 | 1.5 | 1.6 | 1.7 | 6.7 | 1.6 | 1.5 | 1.5 | 1.7 | 1.6 | 1.8 | 1.3 | 1.5 | 1.7 | 1.6 | 1.7 | 6.5 | 1.8 | 2.0 | 1.8 | 1.8 | 1.8 | 1.8 | 6.9 | 2.1 | 2.2 | 1.9 | 2.0 | 2.1 | 2.2 | 2.2 | 2.3 | 2.4 | 2.5 | 2.7 | 2.8 | 2.7 | 2.9 | 3.2 | 3.2 | 3.5 | 3.5 | 3.6 | 3.7 |
| CT | MAPQ >= 30 | 10.1 | 5.7 | 6.7 | 6.7 | 6.3 | 7.3 | 7.2 | 7.7 | 7.0 | 7.1 | 7.1 | 7.2 | 7.2 | 7.1 | 7.3 | 7.1 | 7.1 | 7.2 | 7.2 | 7.2 | 7.3 | 7.3 | 7.2 | 7.2 | 7.3 | 7.2 | 7.3 | 7.3 | 7.2 | 7.2 | 7.2 | 7.3 | 7.3 | 7.2 | 7.2 | 7.2 | 7.2 | 7.3 | 7.3 | 7.3 | 5.9 | 6.0 | 7.3 | 7.3 | 7.3 | 7.3 | 7.4 | 7.3 | 7.2 | 7.3 | 7.3 | 7.3 | 7.3 | 7.2 | 7.2 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.2 | 7.3 | 7.3 |
| CT | MAPQ >= 20 | 9.6 | 5.5 | 6.4 | 6.4 | 6.0 | 7.0 | 6.9 | 7.3 | 6.7 | 6.9 | 6.5 | 6.9 | 7.0 | 6.6 | 7.0 | 7.0 | 6.5 | 6.9 | 7.0 | 7.0 | 7.2 | 7.0 | 7.0 | 6.9 | 6.8 | 6.9 | 6.9 | 7.0 | 6.8 | 6.8 | 6.8 | 6.7 | 6.8 | 6.5 | 6.6 | 6.5 | 6.9 | 6.9 | 6.9 | 7.0 | 4.7 | 4.9 | 7.1 | 6.9 | 6.9 | 7.1 | 7.1 | 6.8 | 6.5 | 6.9 | 6.8 | 7.0 | 7.1 | 6.6 | 6.3 | 6.8 | 7.0 | 7.0 | 6.9 | 6.9 | 7.0 | 6.8 | 6.8 | 6.8 | 7.0 | 6.7 | 6.8 | 6.8 | 6.9 | 6.6 | 6.4 | 6.4 | 6.6 | 6.6 |
| CT | MAPQ >= 10 | 9.4 | 5.5 | 6.4 | 6.6 | 5.9 | 7.1 | 6.8 | 7.5 | 6.5 | 6.7 | 6.6 | 7.0 | 6.9 | 6.6 | 7.1 | 7.0 | 6.7 | 7.1 | 6.8 | 6.7 | 7.1 | 6.9 | 6.8 | 6.5 | 6.7 | 6.8 | 6.8 | 6.9 | 6.6 | 6.5 | 6.6 | 6.7 | 7.1 | 6.5 | 6.9 | 6.5 | 6.6 | 6.9 | 6.9 | 6.7 | 5.6 | 6.0 | 7.0 | 7.1 | 6.7 | 7.0 | 7.3 | 6.8 | 6.7 | 7.2 | 7.1 | 7.1 | 7.1 | 6.4 | 6.8 | 6.7 | 7.1 | 7.2 | 6.8 | 7.0 | 7.2 | 7.0 | 6.8 | 6.8 | 7.1 | 7.0 | 7.1 | 7.0 | 7.0 | 6.6 | 6.6 | 6.4 | 6.5 | 6.4 |
| CT | MAPQ >= 3 | 9.7 | 5.6 | 6.7 | 6.7 | 6.3 | 7.3 | 6.8 | 7.3 | 6.6 | 6.7 | 6.6 | 7.2 | 7.2 | 6.7 | 7.2 | 6.9 | 6.8 | 7.1 | 7.0 | 6.7 | 7.0 | 6.8 | 6.8 | 6.4 | 7.1 | 6.8 | 7.0 | 6.9 | 6.5 | 6.4 | 6.5 | 6.4 | 6.8 | 6.4 | 6.8 | 6.6 | 6.8 | 6.9 | 6.9 | 7.1 | 5.4 | 6.0 | 7.1 | 7.6 | 7.0 | 6.9 | 7.2 | 6.8 | 6.7 | 7.2 | 7.3 | 7.2 | 7.5 | 6.5 | 7.0 | 7.0 | 7.1 | 7.4 | 7.2 | 7.4 | 7.4 | 7.1 | 7.1 | 7.0 | 7.1 | 7.1 | 7.0 | 7.2 | 6.8 | 6.6 | 6.6 | 6.5 | 6.5 | 6.6 |
| CT | MAPQ < 3 | 9.1 | 5.2 | 6.1 | 6.3 | 5.9 | 6.8 | 6.6 | 7.1 | 6.4 | 6.6 | 6.5 | 6.6 | 6.6 | 6.5 | 6.7 | 6.7 | 6.5 | 6.8 | 6.7 | 6.7 | 6.8 | 6.6 | 6.6 | 6.4 | 6.6 | 6.6 | 6.5 | 6.6 | 6.5 | 6.5 | 6.6 | 6.5 | 6.7 | 6.4 | 6.6 | 6.5 | 6.6 | 6.6 | 6.6 | 6.6 | 5.4 | 5.6 | 6.8 | 6.7 | 6.6 | 6.7 | 6.7 | 6.7 | 6.5 | 6.7 | 6.8 | 6.7 | 6.8 | 6.4 | 6.7 | 6.6 | 6.7 | 6.7 | 6.7 | 6.7 | 6.9 | 6.7 | 6.7 | 6.7 | 6.8 | 6.7 | 6.7 | 6.7 | 6.6 | 6.5 | 6.5 | 6.4 | 6.5 | 6.5 |
| CT | Unmapped | 8.2 | 4.7 | 5.1 | 5.2 | 5.3 | 6.1 | 5.6 | 5.9 | 5.7 | 5.7 | 5.5 | 5.5 | 5.7 | 5.1 | 5.2 | 5.7 | 5.6 | 5.8 | 5.8 | 5.7 | 5.8 | 5.7 | 5.8 | 5.5 | 5.1 | 5.1 | 5.6 | 5.5 | 5.5 | 5.4 | 5.6 | 5.6 | 5.5 | 5.2 | 5.4 | 5.4 | 5.6 | 5.4 | 5.4 | 5.4 | 4.0 | 4.0 | 5.6 | 5.4 | 10.3 | 5.5 | 4.9 | 4.8 | 4.8 | 5.2 | 5.3 | 5.3 | 5.3 | 5.0 | 5.1 | 5.3 | 10.2 | 5.2 | 5.3 | 10.0 | 5.2 | 5.1 | 9.9 | 4.9 | 4.9 | 4.8 | 4.8 | 4.6 | 4.5 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 |
| GA | MAPQ >= 30 | 5.2 | 7.0 | 6.2 | 6.4 | 6.9 | 6.5 | 6.1 | 5.1 | 5.7 | 5.9 | 5.9 | 5.9 | 5.8 | 5.9 | 5.9 | 6.0 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.0 | 6.1 | 6.1 | 6.2 | 6.1 | 6.1 | 6.1 | 6.1 | 6.2 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.2 | 7.0 | 5.2 | 6.1 | 6.1 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.2 | 6.1 | 6.2 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 |
| GA | MAPQ >= 20 | 5.9 | 7.6 | 6.6 | 6.9 | 7.7 | 7.0 | 6.6 | 5.5 | 6.2 | 6.7 | 6.4 | 6.8 | 6.3 | 6.5 | 6.7 | 6.4 | 6.7 | 6.9 | 6.5 | 6.6 | 6.5 | 6.7 | 6.7 | 6.7 | 6.8 | 6.6 | 7.1 | 6.8 | 7.0 | 6.6 | 6.6 | 6.8 | 6.8 | 7.0 | 6.7 | 7.1 | 6.7 | 6.6 | 6.7 | 6.8 | 8.2 | 4.8 | 6.6 | 6.6 | 7.0 | 6.7 | 6.5 | 6.7 | 7.0 | 7.0 | 6.7 | 6.7 | 6.6 | 6.9 | 7.0 | 7.2 | 6.8 | 6.6 | 7.0 | 6.7 | 6.8 | 6.6 | 6.8 | 6.7 | 6.7 | 6.7 | 7.1 | 6.5 | 6.7 | 6.8 | 7.1 | 7.5 | 7.0 | 7.0 |
| GA | MAPQ >= 10 | 6.3 | 7.6 | 6.5 | 7.2 | 7.6 | 7.3 | 6.7 | 5.4 | 6.5 | 6.9 | 6.5 | 6.5 | 6.3 | 6.5 | 6.8 | 6.6 | 6.9 | 6.7 | 6.7 | 6.7 | 6.7 | 7.1 | 6.9 | 7.0 | 7.0 | 6.6 | 7.4 | 7.0 | 7.2 | 6.8 | 6.8 | 7.0 | 7.0 | 6.7 | 6.9 | 7.0 | 6.6 | 6.9 | 6.8 | 7.1 | 7.9 | 5.6 | 6.9 | 6.9 | 7.0 | 7.0 | 6.6 | 6.9 | 7.3 | 7.0 | 6.7 | 6.9 | 7.0 | 7.2 | 7.2 | 7.1 | 7.1 | 6.8 | 7.2 | 7.1 | 7.0 | 6.8 | 7.0 | 6.8 | 6.9 | 6.7 | 7.0 | 6.6 | 6.8 | 6.9 | 7.3 | 7.3 | 7.0 | 7.0 |
| GA | MAPQ >= 3 | 5.3 | 6.7 | 6.0 | 6.2 | 6.3 | 6.4 | 6.1 | 5.1 | 5.8 | 5.9 | 6.0 | 5.7 | 5.8 | 5.8 | 5.9 | 6.3 | 6.4 | 5.9 | 6.3 | 6.2 | 6.6 | 6.6 | 6.3 | 6.5 | 6.5 | 6.1 | 6.7 | 6.5 | 6.5 | 6.3 | 6.3 | 6.6 | 6.4 | 6.4 | 6.4 | 6.6 | 6.2 | 6.5 | 6.2 | 6.4 | 7.4 | 4.9 | 6.2 | 6.1 | 6.3 | 6.4 | 6.3 | 6.4 | 6.5 | 6.5 | 6.1 | 6.2 | 6.4 | 6.4 | 6.8 | 6.5 | 6.6 | 6.2 | 6.5 | 6.5 | 6.4 | 6.4 | 6.5 | 6.2 | 6.3 | 6.1 | 6.4 | 6.0 | 6.3 | 6.7 | 6.7 | 7.1 | 6.4 | 6.3 |
| GA | MAPQ < 3 | 6.3 | 7.8 | 6.6 | 7.1 | 7.9 | 7.3 | 6.8 | 5.5 | 6.3 | 7.0 | 6.6 | 6.6 | 6.6 | 6.7 | 7.0 | 6.7 | 6.9 | 6.8 | 6.7 | 6.9 | 6.8 | 7.0 | 7.0 | 6.9 | 6.9 | 6.8 | 7.2 | 7.0 | 7.0 | 6.9 | 6.9 | 6.9 | 6.9 | 6.8 | 7.0 | 7.0 | 6.9 | 6.9 | 6.9 | 7.1 | 7.5 | 5.7 | 6.9 | 6.9 | 7.0 | 7.1 | 6.6 | 6.9 | 7.1 | 7.1 | 6.8 | 6.9 | 6.9 | 7.1 | 7.1 | 6.9 | 7.0 | 6.8 | 7.0 | 6.8 | 6.9 | 6.8 | 6.9 | 6.9 | 6.8 | 6.9 | 7.2 | 6.7 | 7.0 | 7.0 | 7.1 | 7.3 | 6.8 | 7.0 |
| GA | Unmapped | 10.7 | 7.3 | 5.5 | 6.1 | 7.3 | 11.8 | 6.2 | 5.3 | 10.9 | 6.6 | 6.2 | 6.4 | 5.9 | 6.7 | 7.3 | 6.4 | 6.4 | 6.0 | 6.2 | 6.6 | 6.5 | 6.5 | 11.0 | 6.5 | 7.0 | 7.1 | 6.6 | 6.1 | 6.7 | 11.9 | 6.6 | 11.3 | 6.1 | 6.6 | 6.8 | 6.7 | 6.5 | 6.1 | 6.6 | 11.8 | 5.3 | 9.5 | 6.1 | 6.4 | 6.8 | 6.6 | 5.9 | 6.1 | 7.2 | 7.0 | 6.7 | 6.6 | 6.3 | 6.8 | 7.3 | 7.1 | 7.0 | 6.6 | 7.1 | 7.4 | 7.4 | 7.4 | 7.2 | 7.8 | 8.1 | 12.9 | 8.4 | 8.0 | 8.6 | 9.0 | 9.1 | 9.0 | 8.6 | 9.2 |
| GC | MAPQ >= 30 | 3.0 | 3.4 | 3.8 | 3.9 | 4.5 | 4.1 | 4.5 | 4.0 | 4.2 | 4.4 | 4.4 | 4.5 | 4.5 | 4.5 | 4.6 | 4.5 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.7 | 4.7 | 4.6 | 4.6 | 4.6 | 4.6 | 4.7 | 4.7 | 4.6 | 4.6 | 3.8 | 3.9 | 4.6 | 4.6 | 4.7 | 4.7 | 4.6 | 4.7 | 4.7 | 4.7 | 4.6 | 4.7 | 4.6 | 4.6 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.6 | 4.7 | 4.6 | 4.7 | 4.6 | 4.6 |
| GC | MAPQ >= 20 | 3.0 | 3.3 | 3.8 | 3.8 | 4.4 | 4.0 | 4.4 | 3.9 | 4.1 | 4.3 | 4.1 | 4.6 | 4.3 | 4.4 | 4.5 | 4.4 | 4.4 | 4.8 | 4.5 | 4.6 | 4.5 | 4.6 | 4.5 | 4.6 | 4.4 | 4.6 | 4.5 | 4.5 | 4.5 | 4.5 | 4.7 | 4.7 | 4.3 | 4.8 | 4.4 | 4.8 | 4.6 | 4.6 | 4.5 | 4.5 | 3.1 | 3.2 | 4.5 | 4.4 | 4.7 | 4.5 | 4.4 | 4.4 | 4.6 | 4.7 | 4.6 | 4.7 | 4.5 | 4.5 | 4.8 | 4.8 | 4.6 | 4.6 | 4.6 | 4.6 | 4.5 | 4.5 | 4.6 | 4.5 | 4.5 | 4.4 | 4.7 | 4.5 | 4.4 | 4.4 | 4.3 | 4.6 | 4.3 | 4.3 |
| GC | MAPQ >= 10 | 3.4 | 3.6 | 4.3 | 4.0 | 4.8 | 4.3 | 5.0 | 4.1 | 4.3 | 4.6 | 4.5 | 4.9 | 4.7 | 4.8 | 4.8 | 4.6 | 4.7 | 4.7 | 4.8 | 5.0 | 4.9 | 5.0 | 4.8 | 5.1 | 4.8 | 4.9 | 4.8 | 4.8 | 4.9 | 5.0 | 5.4 | 5.1 | 4.7 | 5.0 | 4.9 | 4.9 | 5.0 | 5.0 | 4.8 | 4.7 | 4.0 | 4.1 | 4.7 | 4.9 | 4.9 | 5.0 | 4.8 | 4.8 | 4.8 | 4.8 | 4.7 | 5.0 | 4.7 | 4.8 | 5.1 | 5.1 | 4.9 | 4.8 | 4.8 | 4.8 | 4.9 | 4.9 | 5.0 | 4.7 | 5.0 | 5.0 | 5.0 | 4.9 | 4.8 | 4.9 | 4.9 | 4.9 | 4.8 | 4.8 |
| GC | MAPQ >= 3 | 3.6 | 3.9 | 4.5 | 4.1 | 4.9 | 4.4 | 5.3 | 4.4 | 4.5 | 4.6 | 4.6 | 5.0 | 4.6 | 5.0 | 4.8 | 4.7 | 4.8 | 4.6 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 5.2 | 4.9 | 4.9 | 4.7 | 4.7 | 4.7 | 5.0 | 5.3 | 4.9 | 4.7 | 5.0 | 5.0 | 4.9 | 4.9 | 4.9 | 4.8 | 4.9 | 4.0 | 4.3 | 4.7 | 4.9 | 4.8 | 4.9 | 4.5 | 4.8 | 4.8 | 5.1 | 4.7 | 5.0 | 4.7 | 4.8 | 5.3 | 5.1 | 4.9 | 4.8 | 4.8 | 4.8 | 5.1 | 5.0 | 5.0 | 4.8 | 5.2 | 5.1 | 5.4 | 5.3 | 5.1 | 5.2 | 5.0 | 5.3 | 5.1 | 4.9 |
| GC | MAPQ < 3 | 2.9 | 3.2 | 3.7 | 3.7 | 4.3 | 3.8 | 4.3 | 3.7 | 3.9 | 4.1 | 4.1 | 4.2 | 4.1 | 4.3 | 4.3 | 4.2 | 4.3 | 4.3 | 4.3 | 4.3 | 4.2 | 4.4 | 4.2 | 4.4 | 4.3 | 4.3 | 4.3 | 4.3 | 4.3 | 4.4 | 4.5 | 4.4 | 4.2 | 4.4 | 4.4 | 4.3 | 4.4 | 4.4 | 4.2 | 4.2 | 3.5 | 3.6 | 4.2 | 4.3 | 4.3 | 4.3 | 4.3 | 4.2 | 4.3 | 4.4 | 4.2 | 4.4 | 4.2 | 4.3 | 4.5 | 4.4 | 4.4 | 4.3 | 4.3 | 4.3 | 4.4 | 4.4 | 4.4 | 4.3 | 4.4 | 4.4 | 4.4 | 4.3 | 4.2 | 4.3 | 4.2 | 4.4 | 4.3 | 4.3 |
| GC | Unmapped | 2.1 | 2.3 | 2.5 | 2.7 | 3.3 | 2.9 | 2.9 | 3.2 | 3.1 | 3.1 | 8.1 | 3.3 | 3.2 | 3.0 | 3.7 | 3.3 | 3.2 | 3.5 | 8.5 | 3.4 | 3.2 | 3.4 | 3.3 | 3.4 | 3.0 | 3.7 | 8.2 | 3.4 | 3.4 | 3.4 | 3.3 | 3.3 | 3.2 | 3.5 | 3.3 | 3.3 | 3.3 | 3.3 | 3.3 | 3.3 | 2.4 | 2.8 | 3.3 | 3.2 | 3.4 | 3.2 | 3.0 | 2.9 | 3.7 | 3.4 | 3.3 | 8.2 | 3.3 | 3.4 | 3.6 | 3.5 | 3.4 | 3.4 | 3.4 | 3.4 | 3.4 | 8.2 | 3.5 | 3.5 | 3.5 | 3.5 | 3.5 | 3.5 | 3.6 | 3.6 | 3.7 | 3.9 | 3.9 | 4.1 |
| GG | MAPQ >= 30 | 5.2 | 5.5 | 5.5 | 4.9 | 5.2 | 5.2 | 4.7 | 4.3 | 4.8 | 5.0 | 5.0 | 5.0 | 5.1 | 5.2 | 5.3 | 5.5 | 5.6 | 5.6 | 5.6 | 5.7 | 5.7 | 5.5 | 5.5 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.7 | 5.7 | 5.6 | 5.6 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 4.8 | 4.7 | 5.7 | 5.7 | 5.7 | 5.6 | 5.7 | 5.7 | 5.8 | 5.8 | 5.8 | 5.8 | 5.7 | 5.8 | 5.8 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.8 | 5.7 | 5.7 | 5.8 | 5.8 | 5.8 | 5.8 | 5.7 | 5.7 |
| GG | MAPQ >= 20 | 5.4 | 5.6 | 5.6 | 5.0 | 5.4 | 5.4 | 4.7 | 4.5 | 5.1 | 5.2 | 5.4 | 5.2 | 5.0 | 5.4 | 5.5 | 5.4 | 5.7 | 5.8 | 5.8 | 5.7 | 5.8 | 5.5 | 5.6 | 5.8 | 5.8 | 6.0 | 5.7 | 5.8 | 5.8 | 5.9 | 6.1 | 5.7 | 6.0 | 6.2 | 6.1 | 6.2 | 5.9 | 5.7 | 5.8 | 5.9 | 4.2 | 4.1 | 5.7 | 6.0 | 6.0 | 5.7 | 5.8 | 6.0 | 6.3 | 6.1 | 6.0 | 6.0 | 5.9 | 6.0 | 6.1 | 5.8 | 5.7 | 5.8 | 5.7 | 5.8 | 5.8 | 5.7 | 5.8 | 5.8 | 5.8 | 5.9 | 5.9 | 5.7 | 5.8 | 5.9 | 5.8 | 5.7 | 5.7 | 5.7 |
| GG | MAPQ >= 10 | 6.3 | 6.4 | 6.4 | 5.5 | 6.2 | 6.4 | 5.2 | 5.0 | 5.9 | 5.9 | 5.9 | 5.3 | 5.4 | 5.8 | 6.1 | 5.9 | 5.8 | 6.2 | 6.7 | 6.5 | 6.7 | 6.0 | 6.2 | 6.8 | 6.5 | 6.8 | 6.4 | 6.6 | 6.8 | 6.9 | 7.0 | 6.3 | 6.4 | 6.7 | 6.3 | 6.4 | 6.4 | 6.0 | 6.3 | 6.5 | 5.3 | 5.1 | 6.1 | 6.0 | 6.3 | 5.9 | 6.1 | 6.2 | 6.3 | 6.1 | 6.3 | 6.3 | 6.1 | 6.2 | 6.3 | 6.2 | 5.9 | 5.9 | 5.9 | 6.1 | 6.1 | 5.7 | 5.8 | 5.9 | 5.9 | 6.1 | 5.8 | 5.9 | 6.1 | 6.4 | 6.1 | 6.0 | 6.0 | 5.9 |
| GG | MAPQ >= 3 | 6.4 | 6.6 | 6.3 | 5.2 | 5.7 | 6.3 | 5.2 | 4.9 | 5.5 | 6.0 | 5.5 | 5.3 | 5.5 | 5.7 | 6.3 | 6.0 | 6.0 | 6.5 | 6.9 | 6.8 | 6.6 | 6.2 | 6.7 | 7.0 | 6.9 | 7.0 | 6.7 | 6.9 | 7.1 | 7.4 | 7.2 | 6.7 | 6.9 | 6.8 | 6.3 | 6.5 | 6.4 | 6.1 | 6.5 | 6.6 | 5.2 | 5.0 | 6.1 | 5.8 | 6.3 | 6.0 | 6.2 | 6.2 | 6.4 | 6.2 | 6.3 | 6.3 | 6.2 | 6.5 | 6.7 | 6.5 | 6.4 | 6.4 | 6.4 | 6.3 | 6.3 | 6.0 | 6.0 | 6.2 | 6.1 | 6.3 | 5.9 | 6.1 | 6.0 | 6.4 | 6.2 | 6.2 | 6.0 | 6.1 |
| GG | MAPQ < 3 | 5.6 | 5.5 | 5.7 | 5.1 | 5.5 | 5.4 | 4.6 | 4.4 | 5.1 | 5.1 | 5.1 | 5.0 | 5.2 | 5.4 | 5.4 | 5.5 | 5.4 | 5.6 | 5.9 | 5.6 | 5.7 | 5.4 | 5.5 | 5.8 | 5.6 | 5.8 | 5.6 | 5.7 | 5.8 | 5.9 | 5.9 | 5.5 | 5.7 | 5.8 | 5.7 | 5.8 | 5.7 | 5.5 | 5.7 | 5.7 | 4.8 | 4.6 | 5.5 | 5.6 | 5.7 | 5.4 | 5.6 | 5.6 | 5.7 | 5.6 | 5.7 | 5.7 | 5.6 | 5.7 | 5.7 | 5.6 | 5.6 | 5.5 | 5.5 | 5.7 | 5.7 | 5.5 | 5.6 | 5.6 | 5.6 | 5.6 | 5.5 | 5.5 | 5.5 | 5.7 | 5.6 | 5.6 | 5.7 | 5.6 |
| GG | Unmapped | 4.3 | 4.2 | 4.1 | 4.0 | 9.5 | 4.2 | 3.9 | 4.0 | 4.4 | 4.4 | 4.5 | 4.2 | 9.5 | 5.1 | 5.0 | 4.6 | 4.5 | 4.8 | 5.0 | 4.9 | 4.9 | 9.5 | 4.9 | 5.2 | 5.3 | 5.3 | 4.8 | 5.2 | 5.5 | 5.4 | 5.4 | 5.1 | 5.5 | 5.8 | 5.9 | 10.7 | 5.5 | 5.6 | 5.9 | 5.9 | 4.8 | 4.5 | 5.7 | 6.0 | 5.9 | 5.7 | 5.3 | 5.7 | 6.4 | 6.2 | 6.2 | 6.0 | 6.3 | 6.6 | 6.6 | 6.2 | 6.0 | 6.3 | 6.5 | 6.5 | 6.5 | 6.3 | 6.7 | 7.0 | 7.0 | 7.2 | 6.8 | 7.2 | 7.5 | 7.6 | 7.3 | 7.2 | 7.8 | 8.1 |
| GT | MAPQ >= 30 | 5.7 | 4.7 | 4.9 | 4.9 | 5.1 | 5.1 | 5.4 | 4.9 | 4.7 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 4.2 | 4.4 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 |
| GT | MAPQ >= 20 | 5.8 | 4.8 | 4.9 | 4.9 | 5.0 | 5.0 | 5.4 | 4.9 | 4.8 | 5.1 | 4.9 | 5.4 | 4.8 | 4.9 | 5.1 | 5.0 | 4.9 | 5.6 | 5.0 | 5.0 | 5.1 | 5.1 | 5.0 | 5.0 | 5.2 | 5.3 | 5.2 | 5.0 | 5.3 | 5.2 | 5.5 | 5.3 | 5.1 | 5.6 | 5.1 | 5.7 | 5.3 | 5.3 | 5.1 | 5.1 | 3.6 | 3.7 | 5.0 | 5.0 | 5.4 | 5.1 | 5.0 | 4.9 | 5.1 | 5.5 | 4.9 | 5.2 | 5.1 | 4.9 | 4.8 | 5.5 | 5.1 | 5.0 | 5.0 | 4.8 | 5.1 | 4.9 | 5.0 | 4.9 | 4.9 | 4.8 | 5.3 | 4.8 | 5.0 | 4.9 | 4.9 | 5.3 | 5.0 | 4.9 |
| GT | MAPQ >= 10 | 5.9 | 4.9 | 5.0 | 5.1 | 4.9 | 5.0 | 5.6 | 5.0 | 4.7 | 5.2 | 4.9 | 5.1 | 4.9 | 5.1 | 4.9 | 5.1 | 5.0 | 5.0 | 4.9 | 5.0 | 5.0 | 5.1 | 4.9 | 5.0 | 5.3 | 5.0 | 5.1 | 4.8 | 5.0 | 5.0 | 5.3 | 5.0 | 5.1 | 5.1 | 5.0 | 5.0 | 5.1 | 5.2 | 4.8 | 4.9 | 4.3 | 4.3 | 4.9 | 5.0 | 4.9 | 5.0 | 4.9 | 5.0 | 4.8 | 5.2 | 4.7 | 4.9 | 5.0 | 4.8 | 5.0 | 4.9 | 4.9 | 4.6 | 4.6 | 4.5 | 4.6 | 4.7 | 4.8 | 4.8 | 4.7 | 4.7 | 4.8 | 4.8 | 5.0 | 4.9 | 4.9 | 4.7 | 4.8 | 4.8 |
| GT | MAPQ >= 3 | 6.3 | 5.0 | 5.5 | 5.3 | 5.1 | 5.1 | 5.7 | 5.2 | 4.8 | 5.2 | 5.2 | 5.1 | 5.1 | 5.4 | 5.0 | 5.2 | 5.1 | 5.2 | 5.0 | 5.2 | 5.2 | 5.2 | 5.1 | 5.3 | 5.5 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.4 | 5.3 | 5.4 | 5.4 | 5.3 | 5.2 | 5.2 | 5.3 | 5.2 | 5.1 | 4.6 | 4.5 | 5.4 | 5.3 | 5.2 | 5.4 | 5.2 | 5.2 | 5.1 | 5.5 | 5.0 | 5.1 | 5.3 | 5.0 | 5.3 | 5.0 | 5.4 | 4.8 | 4.8 | 4.8 | 4.7 | 5.1 | 5.0 | 5.2 | 5.1 | 5.0 | 5.2 | 5.2 | 5.3 | 5.2 | 5.0 | 4.9 | 5.2 | 4.9 |
| GT | MAPQ < 3 | 5.8 | 4.6 | 4.8 | 4.8 | 4.9 | 4.9 | 5.4 | 4.8 | 4.7 | 5.0 | 4.9 | 4.9 | 4.8 | 4.9 | 5.0 | 4.9 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 4.9 | 5.0 | 5.2 | 5.0 | 5.0 | 4.9 | 4.9 | 5.0 | 5.1 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 5.0 | 5.1 | 4.9 | 4.9 | 4.2 | 4.2 | 5.0 | 5.0 | 4.9 | 5.0 | 5.0 | 4.9 | 4.9 | 5.1 | 4.9 | 5.0 | 4.9 | 4.8 | 5.0 | 4.9 | 5.0 | 4.7 | 4.8 | 4.7 | 4.8 | 4.8 | 4.8 | 4.8 | 4.9 | 4.9 | 4.9 | 4.8 | 5.0 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 |
| GT | Unmapped | 5.0 | 4.0 | 4.0 | 3.8 | 4.3 | 4.4 | 4.5 | 4.8 | 4.1 | 4.4 | 4.4 | 4.6 | 4.3 | 9.1 | 5.2 | 4.5 | 4.5 | 4.6 | 4.5 | 4.5 | 4.5 | 4.7 | 4.5 | 4.5 | 4.3 | 5.2 | 4.6 | 4.4 | 4.5 | 4.5 | 4.6 | 4.6 | 4.4 | 4.7 | 4.4 | 4.7 | 9.3 | 4.5 | 4.5 | 4.4 | 3.4 | 4.1 | 4.5 | 4.4 | 4.5 | 4.5 | 4.2 | 8.8 | 4.9 | 4.4 | 4.3 | 4.5 | 4.4 | 4.3 | 8.9 | 4.4 | 4.4 | 4.2 | 4.2 | 4.1 | 4.3 | 4.2 | 4.2 | 4.0 | 4.1 | 4.2 | 4.3 | 3.9 | 4.0 | 4.0 | 4.1 | 4.3 | 4.1 | 4.2 |
| TA | MAPQ >= 30 | 4.7 | 9.2 | 7.0 | 8.0 | 6.7 | 6.1 | 6.1 | 6.2 | 6.6 | 6.2 | 6.2 | 6.1 | 6.1 | 6.2 | 6.1 | 6.1 | 6.1 | 6.0 | 6.1 | 6.0 | 6.0 | 6.0 | 5.9 | 5.9 | 5.9 | 5.9 | 5.8 | 5.9 | 5.8 | 5.8 | 5.9 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.9 | 5.8 | 7.3 | 4.7 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.7 | 5.8 | 5.7 | 5.7 | 5.8 | 5.8 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.8 | 5.8 | 5.7 | 5.7 | 5.7 | 5.7 | 5.8 | 5.7 | 5.7 | 5.8 |
| TA | MAPQ >= 20 | 3.9 | 8.0 | 6.1 | 6.8 | 5.8 | 5.3 | 5.2 | 5.3 | 5.5 | 5.3 | 5.4 | 5.1 | 5.3 | 5.4 | 5.2 | 5.2 | 5.5 | 5.0 | 5.2 | 5.2 | 5.2 | 5.4 | 5.1 | 5.0 | 5.2 | 5.0 | 4.9 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 4.8 | 5.1 | 4.8 | 5.0 | 5.0 | 5.0 | 5.0 | 7.7 | 3.3 | 4.9 | 5.0 | 4.8 | 4.9 | 5.0 | 5.0 | 4.9 | 4.7 | 5.1 | 4.8 | 4.9 | 4.9 | 5.4 | 4.7 | 4.9 | 4.8 | 4.9 | 4.9 | 4.9 | 5.0 | 4.9 | 4.9 | 4.9 | 5.1 | 4.8 | 5.0 | 5.0 | 5.2 | 5.4 | 5.0 | 5.0 | 5.1 |
| TA | MAPQ >= 10 | 3.4 | 6.7 | 5.1 | 6.0 | 5.0 | 4.5 | 4.4 | 4.5 | 4.8 | 4.5 | 4.6 | 4.5 | 4.6 | 4.7 | 4.7 | 4.5 | 4.5 | 4.3 | 4.4 | 4.5 | 4.3 | 4.7 | 4.3 | 4.2 | 4.3 | 4.3 | 4.1 | 4.2 | 4.2 | 4.0 | 4.1 | 4.2 | 4.1 | 4.1 | 4.0 | 4.2 | 4.1 | 4.0 | 4.2 | 4.3 | 5.7 | 3.4 | 4.1 | 4.1 | 4.1 | 4.2 | 4.1 | 4.4 | 4.3 | 4.2 | 4.3 | 4.2 | 4.1 | 4.2 | 4.1 | 4.2 | 4.2 | 4.2 | 4.3 | 4.3 | 4.3 | 4.3 | 4.3 | 4.3 | 4.3 | 4.5 | 4.3 | 4.2 | 4.2 | 4.3 | 4.3 | 4.2 | 4.0 | 4.2 |
| TA | MAPQ >= 3 | 4.0 | 7.6 | 5.6 | 7.1 | 5.7 | 5.3 | 5.0 | 5.3 | 5.4 | 5.2 | 5.4 | 5.1 | 5.2 | 5.7 | 5.4 | 5.2 | 5.1 | 5.0 | 5.1 | 5.1 | 4.9 | 5.1 | 4.8 | 4.8 | 4.7 | 4.9 | 4.6 | 4.6 | 4.7 | 4.5 | 4.8 | 4.7 | 4.7 | 4.6 | 4.6 | 4.8 | 4.8 | 4.6 | 4.8 | 4.9 | 6.4 | 3.8 | 4.8 | 4.8 | 4.8 | 4.7 | 4.6 | 4.9 | 4.9 | 4.9 | 5.1 | 4.8 | 4.8 | 4.7 | 4.7 | 4.8 | 4.9 | 5.0 | 5.1 | 5.1 | 5.3 | 5.0 | 5.1 | 5.1 | 5.3 | 5.0 | 5.1 | 5.2 | 5.0 | 5.1 | 5.0 | 5.0 | 4.7 | 4.8 |
| TA | MAPQ < 3 | 3.7 | 7.5 | 5.5 | 6.5 | 5.3 | 4.9 | 4.8 | 4.9 | 5.2 | 5.0 | 4.9 | 4.9 | 4.8 | 5.0 | 5.0 | 4.9 | 4.9 | 4.8 | 4.9 | 4.9 | 4.8 | 5.0 | 4.8 | 4.7 | 4.7 | 4.8 | 4.7 | 4.7 | 4.7 | 4.6 | 4.7 | 4.7 | 4.7 | 4.6 | 4.7 | 4.7 | 4.7 | 4.7 | 4.8 | 4.7 | 6.0 | 3.8 | 4.6 | 4.8 | 4.7 | 4.7 | 4.7 | 4.8 | 4.7 | 4.7 | 4.8 | 4.7 | 4.6 | 4.8 | 4.7 | 4.7 | 4.8 | 4.6 | 4.8 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.8 | 4.8 | 4.7 | 4.8 | 4.8 | 4.8 | 4.7 | 4.7 | 4.6 | 4.7 |
| TA | Unmapped | 3.9 | 9.0 | 5.8 | 7.0 | 6.3 | 5.7 | 6.2 | 5.5 | 6.2 | 5.9 | 5.9 | 5.6 | 5.5 | 6.1 | 5.2 | 5.5 | 5.6 | 5.3 | 5.4 | 5.4 | 5.4 | 5.3 | 5.2 | 5.2 | 5.9 | 4.9 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 5.4 | 5.1 | 5.2 | 5.0 | 5.1 | 9.9 | 5.1 | 5.1 | 4.2 | 3.9 | 5.0 | 5.2 | 5.0 | 5.1 | 4.7 | 5.0 | 9.8 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.4 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 4.9 | 5.0 | 5.0 | 5.0 | 5.0 | 4.9 | 4.8 | 4.7 | 4.6 | 4.5 | 4.6 | 4.1 | 4.1 | 4.0 |
| TC | MAPQ >= 30 | 2.6 | 6.8 | 5.8 | 5.7 | 6.2 | 5.5 | 6.5 | 6.5 | 6.5 | 6.1 | 6.2 | 6.1 | 6.2 | 6.1 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.1 | 6.1 | 6.0 | 6.1 | 6.1 | 6.0 | 6.1 | 6.1 | 6.0 | 6.1 | 6.0 | 6.1 | 6.0 | 6.1 | 6.0 | 6.1 | 6.1 | 6.1 | 5.0 | 5.0 | 6.2 | 6.1 | 6.2 | 6.1 | 6.1 | 6.1 | 6.0 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.0 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 |
| TC | MAPQ >= 20 | 2.7 | 7.2 | 6.5 | 6.2 | 6.8 | 5.8 | 7.0 | 7.3 | 7.2 | 6.5 | 6.5 | 6.5 | 7.0 | 6.6 | 6.5 | 6.5 | 6.4 | 6.5 | 6.7 | 6.6 | 6.5 | 6.6 | 6.5 | 6.6 | 6.5 | 6.4 | 6.5 | 6.4 | 6.6 | 6.4 | 6.3 | 6.6 | 6.2 | 6.7 | 6.3 | 6.4 | 6.3 | 6.6 | 6.6 | 6.6 | 4.6 | 4.7 | 6.9 | 6.8 | 6.7 | 6.6 | 6.7 | 6.6 | 6.4 | 6.3 | 6.7 | 6.6 | 6.5 | 6.7 | 6.3 | 6.0 | 6.7 | 6.7 | 6.7 | 6.4 | 6.5 | 6.4 | 6.4 | 6.6 | 6.5 | 6.3 | 6.4 | 6.7 | 6.4 | 6.5 | 6.3 | 6.5 | 6.9 | 7.0 |
| TC | MAPQ >= 10 | 2.8 | 7.6 | 7.1 | 6.8 | 7.2 | 5.8 | 7.5 | 7.9 | 7.7 | 6.6 | 6.9 | 6.9 | 7.6 | 6.9 | 7.0 | 6.9 | 6.8 | 7.2 | 7.1 | 6.9 | 6.8 | 6.7 | 6.7 | 6.8 | 7.0 | 6.8 | 6.8 | 6.7 | 6.9 | 6.7 | 6.6 | 6.9 | 6.6 | 7.5 | 6.8 | 7.1 | 6.7 | 6.9 | 7.0 | 6.9 | 5.8 | 5.9 | 7.4 | 7.2 | 7.2 | 6.8 | 7.1 | 7.2 | 6.9 | 6.7 | 7.1 | 7.3 | 7.1 | 7.2 | 6.5 | 6.8 | 7.1 | 7.2 | 7.2 | 6.6 | 6.9 | 6.7 | 6.7 | 7.0 | 6.8 | 6.9 | 6.8 | 6.8 | 6.6 | 6.7 | 6.4 | 6.6 | 6.6 | 6.6 |
| TC | MAPQ >= 3 | 2.7 | 7.6 | 6.4 | 6.5 | 6.8 | 5.5 | 7.2 | 6.8 | 6.7 | 6.0 | 6.3 | 6.3 | 6.7 | 6.3 | 6.2 | 6.3 | 6.3 | 6.5 | 6.4 | 6.5 | 6.2 | 6.0 | 6.1 | 6.4 | 6.0 | 6.4 | 6.7 | 6.3 | 6.6 | 6.2 | 5.7 | 6.3 | 5.9 | 6.8 | 6.1 | 6.5 | 6.2 | 6.4 | 6.5 | 6.2 | 5.2 | 5.2 | 7.2 | 6.6 | 6.7 | 6.4 | 6.6 | 6.4 | 6.3 | 6.3 | 6.4 | 6.7 | 6.6 | 6.4 | 6.3 | 6.3 | 6.4 | 6.6 | 6.7 | 6.2 | 6.2 | 5.9 | 5.9 | 6.1 | 6.1 | 6.2 | 5.8 | 5.8 | 5.7 | 5.7 | 5.6 | 5.8 | 5.8 | 6.1 |
| TC | MAPQ < 3 | 2.8 | 7.5 | 7.1 | 6.7 | 7.1 | 6.0 | 7.4 | 7.8 | 7.6 | 6.8 | 6.8 | 6.9 | 7.4 | 6.9 | 6.8 | 6.8 | 6.8 | 7.0 | 6.9 | 6.9 | 6.8 | 6.8 | 6.8 | 6.9 | 6.9 | 6.9 | 6.7 | 6.7 | 7.0 | 6.8 | 6.8 | 6.9 | 6.7 | 7.3 | 6.8 | 7.0 | 6.7 | 6.9 | 6.9 | 6.8 | 5.6 | 5.8 | 7.1 | 7.1 | 6.9 | 6.8 | 7.1 | 7.1 | 6.9 | 6.6 | 6.9 | 7.1 | 6.9 | 7.0 | 6.7 | 6.7 | 7.1 | 7.0 | 7.0 | 6.8 | 6.8 | 6.9 | 6.8 | 7.0 | 6.9 | 6.8 | 6.8 | 6.8 | 6.6 | 6.9 | 6.6 | 6.8 | 6.8 | 7.0 |
| TC | Unmapped | 2.5 | 6.7 | 11.3 | 5.9 | 6.2 | 5.4 | 6.2 | 6.9 | 6.9 | 6.1 | 5.7 | 6.0 | 6.8 | 5.9 | 5.4 | 10.6 | 5.9 | 6.6 | 6.2 | 6.0 | 5.3 | 5.9 | 6.5 | 6.3 | 5.5 | 5.1 | 5.8 | 6.4 | 6.1 | 5.8 | 5.4 | 6.0 | 6.3 | 6.2 | 5.8 | 5.6 | 5.8 | 6.6 | 6.1 | 5.8 | 4.0 | 4.4 | 6.5 | 11.2 | 5.9 | 10.5 | 5.6 | 6.0 | 5.7 | 5.7 | 5.5 | 5.8 | 6.4 | 6.2 | 5.7 | 10.1 | 6.0 | 6.7 | 11.3 | 6.0 | 5.7 | 6.2 | 6.7 | 6.5 | 6.1 | 5.8 | 6.2 | 7.0 | 6.5 | 6.4 | 6.0 | 6.5 | 7.3 | 6.9 |
| TG | MAPQ >= 30 | 4.1 | 7.3 | 6.8 | 8.0 | 7.0 | 7.0 | 6.4 | 7.4 | 7.9 | 7.3 | 7.3 | 7.4 | 7.5 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.6 | 7.6 | 7.5 | 7.5 | 7.5 | 7.6 | 7.6 | 7.6 | 7.7 | 7.6 | 7.6 | 7.7 | 7.6 | 7.7 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 6.3 | 6.2 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.5 | 7.6 | 7.6 | 7.5 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.5 | 7.5 |
| TG | MAPQ >= 20 | 4.3 | 7.6 | 7.1 | 8.3 | 7.2 | 6.9 | 6.6 | 7.7 | 8.1 | 7.4 | 7.6 | 7.3 | 7.8 | 7.8 | 7.3 | 7.6 | 8.0 | 7.3 | 7.6 | 7.7 | 7.5 | 7.7 | 7.8 | 7.7 | 7.7 | 7.7 | 7.8 | 8.0 | 7.8 | 8.0 | 7.9 | 7.8 | 8.2 | 7.5 | 8.1 | 7.5 | 7.6 | 7.8 | 7.9 | 7.8 | 5.3 | 5.2 | 7.8 | 7.9 | 7.4 | 7.6 | 7.5 | 7.8 | 7.6 | 7.3 | 7.7 | 7.4 | 7.8 | 7.9 | 7.5 | 7.0 | 7.6 | 7.9 | 7.7 | 7.7 | 7.3 | 7.7 | 7.5 | 7.6 | 7.4 | 7.7 | 7.1 | 7.4 | 7.6 | 7.4 | 7.4 | 7.0 | 7.3 | 7.1 |
| TG | MAPQ >= 10 | 4.6 | 8.0 | 7.7 | 8.5 | 7.7 | 7.2 | 6.7 | 8.2 | 8.4 | 7.4 | 7.4 | 7.6 | 8.4 | 8.1 | 7.5 | 7.9 | 8.2 | 7.9 | 7.9 | 7.9 | 7.7 | 8.0 | 8.2 | 7.8 | 7.9 | 7.9 | 8.0 | 8.1 | 8.0 | 8.3 | 8.1 | 7.8 | 8.2 | 8.0 | 8.1 | 7.8 | 7.9 | 8.1 | 8.3 | 8.2 | 6.5 | 6.4 | 8.2 | 8.2 | 7.9 | 7.8 | 7.9 | 8.2 | 7.8 | 7.5 | 8.0 | 7.8 | 8.0 | 8.3 | 7.7 | 7.9 | 7.6 | 7.8 | 7.9 | 7.6 | 7.3 | 7.9 | 7.7 | 7.9 | 7.7 | 7.7 | 7.5 | 7.8 | 8.2 | 7.9 | 7.8 | 7.5 | 7.7 | 7.7 |
| TG | MAPQ >= 3 | 4.5 | 8.0 | 7.3 | 8.2 | 7.6 | 7.6 | 6.6 | 7.9 | 8.2 | 7.2 | 7.1 | 7.3 | 8.0 | 7.8 | 7.4 | 7.7 | 7.6 | 7.6 | 7.7 | 7.6 | 7.4 | 7.8 | 7.9 | 7.7 | 7.8 | 7.7 | 8.0 | 7.8 | 7.9 | 8.0 | 7.9 | 7.7 | 7.8 | 7.7 | 8.0 | 7.7 | 7.8 | 8.1 | 8.2 | 8.3 | 6.7 | 6.6 | 8.1 | 8.3 | 8.2 | 7.8 | 7.8 | 8.0 | 7.8 | 7.3 | 7.7 | 7.6 | 8.0 | 8.2 | 7.6 | 7.8 | 7.5 | 7.7 | 7.6 | 7.6 | 7.5 | 8.1 | 7.8 | 8.2 | 7.9 | 7.8 | 7.8 | 7.9 | 8.7 | 7.9 | 8.1 | 7.6 | 7.7 | 7.8 |
| TG | MAPQ < 3 | 4.4 | 7.8 | 7.3 | 8.5 | 7.3 | 7.1 | 6.6 | 7.8 | 8.1 | 7.5 | 7.4 | 7.6 | 7.9 | 7.8 | 7.5 | 7.7 | 7.8 | 7.8 | 7.7 | 7.9 | 7.8 | 7.9 | 8.0 | 7.8 | 7.9 | 7.9 | 7.9 | 7.9 | 7.8 | 8.0 | 7.8 | 7.7 | 8.1 | 7.8 | 7.8 | 7.7 | 7.8 | 7.9 | 7.9 | 8.0 | 6.3 | 6.3 | 8.0 | 7.9 | 7.8 | 7.7 | 7.7 | 8.0 | 7.8 | 7.5 | 7.8 | 7.8 | 7.9 | 8.0 | 7.5 | 7.8 | 7.6 | 7.8 | 7.7 | 7.7 | 7.5 | 7.8 | 7.7 | 7.8 | 7.8 | 7.8 | 7.6 | 7.7 | 7.9 | 7.8 | 7.8 | 7.6 | 7.7 | 7.7 |
| TG | Unmapped | 3.5 | 6.5 | 5.8 | 6.8 | 6.1 | 5.8 | 6.0 | 6.5 | 7.2 | 6.6 | 6.5 | 6.6 | 7.1 | 7.4 | 6.1 | 6.5 | 6.9 | 7.1 | 6.9 | 6.9 | 6.5 | 6.7 | 7.2 | 7.1 | 7.2 | 11.0 | 6.9 | 7.1 | 7.0 | 6.8 | 6.4 | 6.7 | 7.2 | 6.8 | 6.7 | 6.2 | 6.7 | 7.0 | 6.9 | 6.7 | 5.2 | 4.8 | 6.9 | 6.9 | 6.5 | 6.3 | 6.1 | 6.5 | 6.3 | 6.3 | 11.1 | 6.5 | 6.7 | 6.7 | 6.2 | 6.0 | 6.2 | 6.6 | 6.3 | 6.2 | 10.6 | 6.1 | 6.2 | 6.1 | 10.7 | 5.5 | 5.6 | 5.8 | 5.6 | 5.4 | 5.1 | 5.2 | 5.7 | 5.4 |
| TT | MAPQ >= 30 | 4.8 | 10.3 | 9.2 | 8.7 | 8.0 | 8.8 | 10.3 | 11.2 | 10.8 | 10.3 | 10.2 | 10.1 | 10.0 | 9.6 | 9.3 | 9.1 | 8.9 | 8.8 | 8.8 | 8.8 | 8.9 | 9.0 | 9.0 | 9.1 | 9.1 | 9.1 | 9.0 | 9.0 | 9.0 | 8.9 | 8.9 | 8.9 | 8.8 | 8.7 | 8.7 | 8.8 | 8.8 | 8.8 | 8.8 | 8.8 | 7.2 | 7.2 | 8.9 | 8.8 | 8.8 | 8.8 | 8.8 | 8.8 | 8.7 | 8.7 | 8.7 | 8.7 | 8.8 | 8.7 | 8.6 | 8.7 | 8.8 | 8.8 | 8.8 | 8.7 | 8.8 | 8.7 | 8.8 | 8.8 | 8.8 | 8.7 | 8.7 | 8.8 | 8.8 | 8.8 | 8.8 | 8.8 | 8.9 | 8.9 |
| TT | MAPQ >= 20 | 4.7 | 10.3 | 9.0 | 8.4 | 7.9 | 8.6 | 10.3 | 11.0 | 10.4 | 9.9 | 9.5 | 9.8 | 9.7 | 9.2 | 8.8 | 8.9 | 8.5 | 8.3 | 8.6 | 8.6 | 8.7 | 8.9 | 8.9 | 8.6 | 8.5 | 8.3 | 8.6 | 8.7 | 8.5 | 8.5 | 8.4 | 8.6 | 8.4 | 8.2 | 8.2 | 8.1 | 8.5 | 8.7 | 8.5 | 8.3 | 5.7 | 5.8 | 8.8 | 8.3 | 8.3 | 8.6 | 8.6 | 8.4 | 8.0 | 8.2 | 8.6 | 8.5 | 8.7 | 8.5 | 7.7 | 7.9 | 8.8 | 8.6 | 8.5 | 8.5 | 8.8 | 8.9 | 8.8 | 8.9 | 8.8 | 8.6 | 8.9 | 9.0 | 8.9 | 8.7 | 8.5 | 8.6 | 8.7 | 8.7 |
| TT | MAPQ >= 10 | 4.8 | 10.1 | 9.0 | 8.3 | 7.6 | 8.3 | 10.2 | 10.4 | 9.6 | 9.2 | 9.2 | 9.7 | 9.2 | 8.6 | 8.5 | 8.3 | 8.4 | 8.2 | 8.1 | 7.9 | 8.2 | 8.1 | 8.1 | 8.1 | 7.9 | 7.8 | 7.8 | 8.0 | 7.9 | 7.9 | 7.8 | 8.0 | 8.1 | 8.0 | 7.9 | 7.8 | 7.7 | 8.0 | 7.8 | 7.5 | 6.2 | 6.5 | 8.0 | 7.6 | 7.6 | 7.8 | 7.8 | 7.7 | 7.4 | 7.4 | 8.0 | 7.8 | 7.8 | 7.6 | 7.3 | 7.7 | 7.7 | 7.6 | 7.5 | 7.3 | 7.5 | 7.9 | 7.9 | 7.8 | 7.7 | 7.6 | 7.8 | 7.7 | 7.8 | 7.7 | 7.7 | 8.0 | 7.9 | 8.1 |
| TT | MAPQ >= 3 | 4.9 | 10.0 | 9.3 | 8.7 | 8.0 | 8.6 | 9.9 | 10.4 | 9.9 | 9.4 | 9.6 | 9.8 | 9.6 | 9.1 | 8.9 | 8.6 | 8.6 | 8.4 | 8.5 | 8.0 | 8.3 | 8.2 | 8.3 | 8.2 | 8.1 | 8.3 | 8.1 | 8.2 | 8.0 | 7.9 | 7.7 | 7.8 | 8.0 | 7.9 | 8.0 | 8.0 | 7.9 | 8.0 | 8.1 | 7.8 | 6.4 | 6.8 | 8.3 | 7.9 | 7.7 | 7.7 | 7.8 | 7.5 | 7.3 | 7.4 | 7.8 | 7.9 | 7.7 | 7.8 | 7.5 | 7.7 | 7.7 | 8.0 | 7.9 | 7.8 | 8.0 | 7.9 | 8.2 | 8.0 | 7.8 | 7.8 | 8.0 | 7.9 | 7.8 | 7.7 | 7.6 | 7.8 | 7.9 | 8.1 |
| TT | MAPQ < 3 | 4.8 | 10.5 | 9.3 | 8.5 | 7.8 | 8.7 | 10.6 | 11.2 | 10.4 | 9.9 | 9.8 | 10.2 | 9.7 | 9.2 | 8.9 | 8.8 | 8.9 | 8.8 | 8.7 | 8.7 | 8.8 | 8.9 | 9.0 | 8.7 | 8.7 | 8.6 | 8.6 | 8.8 | 8.6 | 8.6 | 8.5 | 8.7 | 8.8 | 8.6 | 8.6 | 8.6 | 8.6 | 8.7 | 8.6 | 8.5 | 7.1 | 7.1 | 8.8 | 8.6 | 8.5 | 8.8 | 8.7 | 8.6 | 8.4 | 8.4 | 8.8 | 8.7 | 8.6 | 8.5 | 8.3 | 8.6 | 8.7 | 8.6 | 8.5 | 8.4 | 8.6 | 8.8 | 8.7 | 8.7 | 8.3 | 8.4 | 8.6 | 8.5 | 8.6 | 8.4 | 8.5 | 8.8 | 8.7 | 8.8 |
| TT | Unmapped | 4.5 | 10.6 | 8.9 | 8.4 | 8.2 | 9.5 | 11.3 | 12.1 | 11.8 | 11.0 | 11.0 | 11.6 | 11.1 | 9.9 | 14.5 | 10.5 | 11.0 | 10.5 | 10.4 | 10.0 | 10.4 | 11.1 | 11.0 | 10.6 | 9.4 | 9.6 | 10.9 | 10.6 | 10.1 | 9.8 | 10.2 | 10.8 | 10.3 | 9.9 | 9.7 | 10.0 | 10.8 | 10.4 | 10.0 | 9.6 | 7.3 | 7.9 | 10.5 | 10.1 | 9.9 | 10.4 | 10.3 | 9.6 | 9.3 | 9.6 | 10.1 | 10.6 | 10.4 | 9.9 | 9.1 | 9.4 | 10.4 | 14.9 | 9.4 | 9.1 | 9.4 | 10.0 | 9.5 | 14.0 | 8.5 | 8.6 | 9.2 | 8.7 | 8.3 | 7.9 | 7.9 | 8.6 | 8.4 | 8.1 |
Percentage of 2-mers at each position of the read for each alignment quality interval. Numbers shown in bold corresponds to p-values of <= 1e-100.
| MAPQ >= 30 | MAPQ >= 20 | MAPQ >= 10 | MAPQ >= 3 | MAPQ < 3 |
| A | C | G | T | N |
| A | C | G | T | N |
| A | C | G | T | N |
| A | C | G | T | N |
| A | C | G | T | N |
| A | C | G | T | N |
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AT AA AG CT CA |
AA TT TA AT TG |
AA AT TT AG TA |
AA TT TA TG AG |
AA AT TT AG TG |
AA TT AT CA AG |
AA TT AT CT CA |
TT AA AT CT TG |
TT AA TG CA AT |
TT AA AT CA TG |
TT AA AT TG CA |
TT AA TG AT CA |
TT AA TG CA AT |
TT AA TG CA AT |
AA TT CA TG AT |
AA TT TG CA AT |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT TG CA CT |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA CA TA TT GA |
AA AT AG TT AC |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AT AA AG CT CA |
AA TT AT TA TG |
AA AT TT TG CA |
AA TT TG AT CA |
AA TT AT GA AG |
AA TT AT CA AG |
TT AA AT TC CT |
TT AA AT TG CT |
TT AA TG CA AT |
TT AA CA TG AT |
AA TT AT TG CA |
TT AA AT TG CA |
TT AA TG AT CA |
TT AA TG CA AT |
AA TT CA AT TG |
AA TT TG AT CA |
AA TT TG CA AG |
AA TT AT CA TG |
TT AA CA TG AT |
AA TT CA TG AT |
AA TT CA TG AT |
TT AA TG CA AT |
TT AA TG CA AG |
AA TT CA TG AT |
AA TT TG CA AG |
AA TT TG CA AT |
AA TT TG CA AT |
AA TT TG CA AG |
AA TT TG CA AT |
AA TT TG CA AG |
AA TT TG CA AT |
TT AA TG CA AT |
AA TT TG CA AG |
AA TT TG AT CA |
AA TT TG CA AG |
AA TT CA TG AT |
AA TT CA TG AT |
AA TT TG CA AT |
AA TT TG CA AT |
AA TT TG CA AT |
AA CA GA TA TT |
AA AT AG AC TT |
TT AA TG CA AT |
AA TT TG CA AG |
AA TT CA TG AT |
AA TT CA TG AT |
AA TT CA TG AT |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT AT CA TG |
AA TT CA TG AG |
AA TT CA TG AT |
AA TT TG CA AT |
AA TT TG CA AG |
AA CA TT TG AG |
AA TT AT CA GA |
AA TT TG CA AT |
AA TT TG CA AT |
AA TT CA TG GA |
AA TT CA TG AT |
AA TT CA TG AT |
AA TT TG CA AG |
AA TT CA TG AT |
AA TT CA TG AT |
AA TT CA TG AT |
AA TT TG CA AG |
AA TT CA AT TG |
AA TT CA TG AT |
AA TT CA TG AT |
AA TT CA TG AT |
AA TT AG CA TG |
AA TT AT AG GA |
AA TT AT CA TG |
TT AA AT CA AG |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AT AA AG CT CA |
TT AA AT TG TC |
AT TT AA TG CA |
TG TT CA AA AT |
AA TG GA TT CA |
AA AT TT CA GA |
TT AA AT TC CT |
TT TG AA TC CA |
TT TG AA CA TC |
TT AA CA TG AT |
TT AA AT CA TG |
TT AA AT TG CA |
TT TG AA CA TC |
TT TG AA CA AT |
TT AA CA TG CT |
AA TT TG CA AT |
TT TG AA CA AT |
TT TG AA CA AT |
TT CA TG AA AT |
CA TG TT AA AT |
TT AA TG CA AT |
TT TG AA CA AT |
TG TT AA CA AG |
TT CA AA TG AT |
AA TT TG CA AG |
AA CA TG TT AG |
TG AA TT CA GA |
TG TT AA CA AG |
TG CA TT AA AT |
TG TT CA AA AG |
CA TG TT AA AT |
CA TT TG AA AT |
TG TT CA AA AT |
TG TT AA CA TC |
CA TG TT AA AT |
CA AA TG TT AT |
AA CA TG TT AT |
TG CA AA TT AT |
TG AA CA TT AT |
TG CA AA TT AT |
AA CA GA TG TT |
AA AT AG TT TG |
TG TT CA AA TC |
TG AA CA TT TC |
CA TG AA TT AT |
AA CA TG TT AT |
AA TG TT CA AT |
TG CA AA TT TC |
AA CA TG TT GA |
AA CA AT TG TT |
AA TT TG CA AT |
AA TG TT CA TC |
AA TG CA TT AT |
TG AA CA TT GA |
AA CA TG AT TT |
AA TG CA TT AT |
AA CA TT TG AT |
AA CA TG TT AT |
AA CA TG TT TC |
AA CA TG TT AT |
AA CA TT AT TG |
AA CA TG TT AT |
AA TT TG CA AT |
AA CA TG TT AT |
AA CA TG TT CT |
AA CA TG TT AT |
AA CA TT TG CT |
AA TG TT CA AT |
AA TG TT CA CT |
AA TG CA TT GA |
AA CA TG TT GA |
AA TT CA TG GA |
AA CA TT TG AT |
AA TT CA TG AT |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AT AA AG CT CA |
TT AA AT TG TA |
TT AT AA CA TG |
TT TG AA CA AT |
AA TT TG AT CA |
AA TT CA AT TG |
TT AA AT TC CT |
TT AA CA TG CT |
TT AA TG CA TC |
TT AA CA TG AT |
TT AA CA AT TG |
TT AA CA TG AT |
TT AA TG CA CT |
TT AA TG CA AG |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA CA TG AG |
TT AA TG CA AG |
TT CA TG AA CT |
TT AA CA TG AG |
TT CA AA TG CT |
TT AA CA TG AG |
TT TG CA AA AG |
TT CA TG AA AG |
AA TT TG CA CT |
TT CA AA TG AG |
TT TG CA AA CT |
TT CA TG AA AG |
CA TT AA TG GG |
CA AA TG TT GG |
CA AA TG TT GG |
CA AA TT TG AG |
AA TT CA TG AG |
AA TT TG CA AT |
CA AA TG TT AG |
AA CA TT TG AT |
AA CA TT TG AT |
AA TG TT CA AT |
TG AA TT CA AT |
TG AA CA TT AT |
AA CA GA TG TA |
AA AT AG TT TG |
TT TG AA CA TC |
TG TT AA CT CA |
TG CA AA TT CT |
AA TG CA TT CC |
AA CA TT TG CT |
AA TG CA TT AG |
AA CA TG AG TT |
AA CA TT TG CT |
AA CA TT TG CT |
AA TT TG CA CT |
AA TG CA TT CT |
AA TG CA TT AG |
AA TG CA TT AG |
AA TG TT CA AG |
AA CA TT TG CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA CA TT TG CT |
AA TT CA TG CT |
AA TG TT CA CT |
AA TT TG CA CT |
AA TG TT CA CT |
AA TG TT CA CT |
AA CA TG TT CT |
AA TT CA TG AG |
AA TT TG CA CT |
AA TG CA TT AG |
AA CA TG TT AG |
AA TG CA AG TT |
AA TT TG CA AG |
AA TT CA TG AT |
AA TT CA TG AT |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AT AA AG CT CA |
TT AA AT GA TG |
AT AA TT TG CA |
AA TG TT AT CA |
AA AT GA TT CA |
AA AT TT CA GA |
TT AA AT TC GA |
TT AA AT TG TC |
TT AA TG CA AT |
TT AA CA AT TG |
AA TT AT CA TG |
TT AA AT TG CA |
TT AA TG AT CA |
TT AA TG AT CA |
AA TT CA TG AT |
AA TT AT TG CA |
TT AA AT TG CA |
TT AA TG AT CA |
TT AA AT CA TG |
AA TT TG AT CA |
TT AA AT CA TG |
TT AA AT TG CA |
TT AA TG CA AT |
AA TT AT CA TG |
AA TT TG AT CA |
AA TT TG CA AT |
AA TT AT TG CA |
AA TT TG AT CA |
AA TT AT TG CA |
AA TT TG CA AT |
AA TT CA TG AT |
TT AA AT CA TG |
TT AA TG AT CA |
AA TT AT TG CA |
TT AA CA TG AT |
AA TT CA AT TG |
AA TT AT CA TG |
AA TT TG AT CA |
AA TT CA TG AT |
AA TT TG CA AT |
AA CA GA TT AT |
AA AT AG TT TG |
TT AA TG AT CA |
AA TT TG CA AT |
AA TT AT CA TG |
AA TT CA AT TG |
AA TT AT TG CA |
AA TT TG CA AT |
AA TT CA TG AT |
AA TT AT CA TG |
AA TT AT TG CA |
AA TT TG AT CA |
AA TT TG AT CA |
AA TT TG CA AT |
AA TT AT CA TG |
AA TT AT TG CA |
AA TT CA AT TG |
AA TT AT CA TG |
AA TT CA TG AT |
AA TT CA AT TG |
AA TT AT CA TG |
AA TT CA TG AT |
AA TT AT CA TG |
AA TT CA TG AT |
AA TT CA AT TG |
AA TT TG CA AT |
AA TT CA TG AT |
AA TT AT CA TG |
AA TT TG CA AT |
AA TT TG AT CA |
AA TT AT TG CA |
AA TT CA AT TG |
AA TT AT CA TG |
AA TT AT CA TG |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AT AA GA AG CT |
AT AA TT TA GA |
TC AT AA TT TG |
AA TT AT TA TG |
AA GG AT TT GA |
GA AA AT TT CA |
AA TT AT TC TA |
TT AG AA AT TC |
TT GA AA AT TG |
TT AG AA AT CA |
AA TT AT GC CA |
TT AA AT TG GA |
TT AA GG AT TG |
AA TT GT TG AT |
TT AA AT GA CA |
AA TC TT AT CA |
CA TT AA AT TG |
AG TT AA AT TG |
TT AA GC AT TG |
CA AA TT AT TG |
AG AA TT AT CA |
TT AA GG AT TG |
TT GA AA AT TG |
AA TT AT TG CA |
AT AA TT CA TG |
AA TG TT AT GA |
TT AA GC AT TG |
TT AA CC AT TG |
AA TT AT TG GA |
GA AA TT AT CA |
AG AA TT AT CA |
GA TT AA AT TG |
AA TT AC AT TG |
AA TT CC AT TG |
AA TT AT CA GA |
AA GG TT AT CA |
TT AA GT AT TG |
AA TT TA AT TG |
AG AA TT AT TG |
GA AA TT AT CA |
AG AA TT AT GA |
GA AA TT AT TG |
AT TT AA TG TC |
TC TT AA AT TG |
AA CT TT AT CA |
AA TC TT AT CA |
TT AA AT CG TG |
AA TT GT AT TG |
AA TA TT AT GA |
AT AA TT GA CA |
TG AA TT AT GA |
TT AA GC AT GA |
TT AA CC AT TG |
AA TT AT CG GA |
AA TT GT AT GA |
AA TC TT AT GA |
TT CT AA AT GA |
TT AA AT TC TG |
TC AA TT AT GA |
CT AA TT AT GA |
TG AA TT AT GA |
TT AA GC AT GA |
CT TT AA AT GA |
TT AA GA AT AG |
TG AA TT GA AT |
GA AA TT AT AG |
AA TT GA AT AG |
AA TT GA AG AT |
AA GA TT AG GG |
AA GA AG TT GG |
AA GA AG AT TT |
AA GA AG TT AT |
AA GA AG TT GG |
AA GA AG GG TT |
Top 5 enriched 2-mers at each positon withion reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| MAPQ >= 30 | MAPQ >= 20 | MAPQ >= 10 | MAPQ >= 3 | MAPQ < 3 | Unmapped | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seqence | Count | P-value | Seqence | Count | P-value | Seqence | Count | P-value | Seqence | Count | P-value | Seqence | Count | P-value | Seqence | Count | P-value |
| TGTAATCCCA | 727427 | 0.0e+00 | AAAAAAAAAA | 187483 | 0.0e+00 | GATTCCATTC | 64164 | 0.0e+00 | CTCCTGACCT | 12012 | 0.0e+00 | GATTCCATTC | 296402 | 0.0e+00 | TTTTTTTTTT | 2710035 | 0.0e+00 |
| CCTGTAATCC | 704939 | 0.0e+00 | TTTTTTTTTT | 160278 | 0.0e+00 | GAATGGAATC | 61114 | 0.0e+00 | TCCTGACCTC | 10655 | 0.0e+00 | GAATGGAATC | 290068 | 0.0e+00 | AAAAAAAAAA | 1983083 | 0.0e+00 |
| GTAATCCCAG | 673748 | 0.0e+00 | ATTCCATTCC | 108262 | 0.0e+00 | AAAAAAAAAA | 59287 | 0.0e+00 | GAGGCTGAGG | 10429 | 0.0e+00 | TGATTCCATT | 257100 | 0.0e+00 | ATTCCATTCC | 1276905 | 0.0e+00 |
| GAGGCTGAGG | 614722 | 0.0e+00 | TTCCATTCCA | 105484 | 0.0e+00 | TGATTCCATT | 53406 | 0.0e+00 | GGAGGCTGAG | 10409 | 0.0e+00 | ATTCCATTCG | 250635 | 0.0e+00 | TTCCATTCCA | 1263297 | 0.0e+00 |
| GGATTACAGG | 565176 | 0.0e+00 | TCCATTCCAT | 101810 | 0.0e+00 | ATTCCATTCC | 52640 | 0.0e+00 | AGGCTGAGGC | 10002 | 0.0e+00 | AATGGAATCA | 247698 | 0.0e+00 | CCATTCCATT | 1235354 | 0.0e+00 |
| CTGGGATTAC | 525612 | 0.0e+00 | CCATTCCATT | 101622 | 0.0e+00 | AATGGAATCA | 51258 | 0.0e+00 | GGCTGAGGCA | 9351 | 0.0e+00 | CGAATGGAAT | 238381 | 0.0e+00 | TCCATTCCAT | 1227801 | 0.0e+00 |
| AATCCCAGCA | 467506 | 0.0e+00 | GGAATGGAAT | 96765 | 0.0e+00 | TTCCATTCCA | 50882 | 0.0e+00 | GCTGAGGCAG | 9127 | 0.0e+00 | TTCCATTCCA | 235813 | 0.0e+00 | CATTCCATTC | 1207167 | 0.0e+00 |
| CAGGCTGGAG | 460113 | 0.0e+00 | GATTCCATTC | 95287 | 0.0e+00 | TCCATTCCAT | 48877 | 0.0e+00 | ATTCCATTCC | 9078 | 0.0e+00 | ATTCCATTCC | 235211 | 0.0e+00 | GGAATGGAAT | 1189821 | 0.0e+00 |
| AGCACTTTGG | 458622 | 0.0e+00 | TGGAATGGAA | 94912 | 0.0e+00 | GGAGGCTGAG | 48801 | 0.0e+00 | CCATTCCATT | 9049 | 0.0e+00 | TTCCATTCGA | 234934 | 0.0e+00 | TGGAATGGAA | 1185442 | 0.0e+00 |
| CAGCACTTTG | 444200 | 0.0e+00 | CATTCCATTC | 93111 | 0.0e+00 | GGAATGGAAT | 48707 | 0.0e+00 | CTGAGGCAGG | 9031 | 0.0e+00 | TCCATTCCAT | 229123 | 0.0e+00 | AATGGAATGG | 1181954 | 0.0e+00 |
| ATCCCAGCAC | 438182 | 0.0e+00 | ATGGAATGGA | 92744 | 0.0e+00 | CCATTCCATT | 48089 | 0.0e+00 | CATTCCATTC | 9025 | 0.0e+00 | TGGAATGGAA | 226678 | 0.0e+00 | ATGGAATGGA | 1176629 | 0.0e+00 |
| GCACTTTGGG | 437128 | 0.0e+00 | AATGGAATGG | 92254 | 0.0e+00 | GAGGCTGAGG | 48030 | 0.0e+00 | TTCCATTCCA | 9003 | 0.0e+00 | CCATTCCATT | 226241 | 0.0e+00 | GAATGGAATG | 1140292 | 0.0e+00 |
| TCCCAGCACT | 432070 | 0.0e+00 | GAATGGAATC | 90820 | 0.0e+00 | TGGAATGGAA | 47381 | 0.0e+00 | TCCATTCCAT | 8947 | 0.0e+00 | TCGAATGGAA | 225503 | 0.0e+00 | GATCGGAAGA | 1099262 | 0.0e+00 |
| CCAGCACTTT | 429014 | 0.0e+00 | TGATTCCATT | 89020 | 0.0e+00 | ATTCCATTCG | 47112 | 0.0e+00 | CTCAGCCTCC | 8908 | 0.0e+00 | GGAATGGAAT | 224424 | 0.0e+00 | ATCGGAAGAG | 1027178 | 0.0e+00 |
| CTGGAGTGCA | 427505 | 0.0e+00 | AATGGAATCA | 85060 | 0.0e+00 | TCCATTCGAT | 47011 | 0.0e+00 | CCTCAGCCTC | 8889 | 0.0e+00 | ATGGAATGGA | 224049 | 0.0e+00 | TCGGAAGAGC | 953831 | 0.0e+00 |
| GATTACAGGC | 424720 | 0.0e+00 | GAATGGAATG | 84299 | 0.0e+00 | ATGGAATGGA | 46619 | 0.0e+00 | AGGCAGGAGA | 8785 | 0.0e+00 | AATGGAATGG | 221100 | 0.0e+00 | CGGAAGAGCG | 897324 | 0.0e+00 |
| GGCTGGAGTG | 421126 | 0.0e+00 | ATTCCATTCG | 78512 | 0.0e+00 | AATGGAATGG | 45780 | 0.0e+00 | TCCCAGCTAC | 8736 | 0.0e+00 | TCCATTCGAT | 217662 | 0.0e+00 | GGAAGAGCGG | 849328 | 0.0e+00 |
| CTCCCAAAGT | 418071 | 0.0e+00 | TCCATTCGAT | 74251 | 0.0e+00 | ATCGAATGGA | 45672 | 0.0e+00 | CCCAGCTACT | 8676 | 0.0e+00 | ATCGAATGGA | 217147 | 0.0e+00 | AGATCGGAAG | 808615 | 0.0e+00 |
| GCTGGAGTGC | 411010 | 0.0e+00 | TTCCATTCGA | 73420 | 0.0e+00 | AGGCTGAGGC | 45290 | 0.0e+00 | GGCAGGAGAA | 8615 | 0.0e+00 | CATTCCATTC | 215787 | 0.0e+00 | GAAGAGCGGT | 789514 | 0.0e+00 |
| AAATACAAAA | 407827 | 0.0e+00 | CGAATGGAAT | 72099 | 0.0e+00 | ATGATTCCAT | 45042 | 0.0e+00 | AATGGAATGG | 8539 | 0.0e+00 | ATGATTCCAT | 215198 | 0.0e+00 | AAGAGCGGTT | 744852 | 0.0e+00 |