ezh2_y641f_k36

Mapping stats: 95% aligned (52.1M aligned out of 55.1M total) 

Number of alignments in various mapping quality (MAPQ) intervals and number of unmapped sequences. The percentage and number of alignments in each category is given in brackets.

Mean Base Quality

Mean base quality of reads with low and high mapping quality.

Error Profile MAPQ >= 30

Mismatches Insertions Deletions

Error Profile MAPQ >= 20

Mismatches Insertions Deletions

Error Profile MAPQ >= 10

Mismatches Insertions Deletions

Error Profile MAPQ >= 3

Mismatches Insertions Deletions

Error Profile MAPQ < 3

Mismatches Insertions Deletions

Nucleotide Over-representation along read

Mer Q 1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
AAMAPQ >= 30 10.3 9.2 8.8 8.8 8.9 8.7 8.8 8.6 8.5 8.6 8.5 8.4 8.4 8.3 8.3 8.2 8.2 8.1 8.1 8.0 8.0 8.0 8.1 8.1 8.1 8.1 8.0 8.0 8.0 8.0 8.0 8.0 8.0 8.0 7.9 7.9 8.0 8.0 8.0 7.9 9.0 8.9 7.9 7.9 7.9 7.9 7.9 7.9 8.0 7.9 7.9 8.0 7.9 7.9 7.9 7.9 7.9 7.9 7.9 7.9 7.9 7.9 7.9 7.9 7.8 7.8 7.9 7.9 7.9 7.9 7.9 7.9 7.9 7.9
AAMAPQ >= 20 9.3 8.4 8.0 8.0 8.1 7.9 8.1 7.8 7.7 7.9 7.9 7.8 7.7 7.7 7.6 7.5 7.4 7.3 7.3 7.3 7.3 7.2 7.3 7.3 7.6 7.5 7.3 7.3 7.3 7.4 7.3 7.2 7.4 7.4 7.3 7.3 7.4 7.3 7.4 7.3 9.3 9.1 7.1 7.2 7.2 7.4 7.5 7.7 7.8 7.6 7.6 7.8 7.5 7.6 7.9 7.8 7.8 7.6 7.7 7.8 7.8 7.9 7.9 8.0 7.9 7.7 7.8 7.9 7.9 7.9 7.8 7.7 7.8 7.9
AAMAPQ >= 10 8.0 7.3 6.9 6.8 6.9 6.9 6.9 6.5 6.6 6.9 6.8 6.7 6.6 6.5 6.3 6.4 6.4 6.2 6.4 6.3 6.3 6.3 6.4 6.4 6.5 6.3 6.3 6.3 6.2 6.3 6.3 6.2 6.3 6.3 6.3 6.4 6.6 6.6 6.6 6.4 7.7 7.4 6.2 6.3 6.4 6.7 6.7 6.8 6.9 6.8 6.8 6.9 6.8 6.9 7.1 7.0 7.2 7.0 7.1 7.4 7.4 7.5 7.6 7.5 7.4 7.4 7.5 7.6 7.5 7.6 7.8 7.8 7.9 7.8
AAMAPQ >= 3 8.4 7.5 7.1 7.2 7.1 7.0 7.3 7.0 7.4 7.5 7.3 7.1 6.9 6.9 6.7 6.9 6.8 6.5 6.4 6.3 6.2 6.3 6.3 6.2 6.3 6.2 6.2 6.3 6.3 6.6 6.7 6.6 6.7 6.6 6.6 6.7 7.0 6.9 6.9 6.6 7.8 7.5 6.3 6.5 6.6 7.0 7.2 7.3 7.3 7.3 7.3 7.4 7.2 7.3 7.6 7.5 7.5 7.3 7.3 7.6 7.5 7.8 8.1 8.0 7.8 7.5 7.7 7.9 7.9 8.1 8.3 8.2 8.2 8.2
AAMAPQ < 3 9.5 8.6 8.1 8.0 8.1 8.0 8.1 7.8 7.8 8.0 8.0 7.9 7.9 7.7 7.6 7.7 7.6 7.5 7.5 7.5 7.4 7.4 7.5 7.5 7.6 7.5 7.4 7.5 7.5 7.5 7.5 7.4 7.5 7.5 7.5 7.5 7.6 7.7 7.6 7.5 8.3 8.2 7.4 7.4 7.5 7.7 7.7 7.7 7.7 7.7 7.7 7.8 7.7 7.8 7.9 7.9 7.9 7.9 7.8 7.9 7.9 8.0 8.1 8.1 8.1 7.9 8.0 8.1 8.1 8.1 8.1 8.0 8.1 8.1
AAUnmapped 10.0 9.3 7.8 7.6 8.7 8.8 16.5 8.8 8.4 8.8 9.0 9.0 9.0 9.3 9.4 9.0 9.1 9.0 8.8 8.9 9.1 9.1 9.0 16.3 9.6 9.6 9.2 9.1 9.0 9.2 9.3 9.2 9.3 9.1 9.1 9.1 9.2 9.1 8.9 9.1 7.2 7.2 9.0 8.9 9.0 9.1 8.3 8.4 9.8 9.1 9.1 9.2 9.0 8.9 9.0 9.0 8.9 8.8 8.6 8.6 8.7 8.7 8.6 8.5 8.6 8.8 15.7 15.9 15.8 15.8 15.4 14.7 14.0 13.3
ACMAPQ >= 30 5.6 5.4 4.9 5.1 5.3 5.0 5.2 5.1 5.1 5.1 5.2 5.1 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.1 5.2 5.2 5.1 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 4.3 6.4 5.2 5.2 5.2 5.2 5.2 5.1 5.2 5.3 5.2 5.3 5.2 5.2 5.3 5.3 5.2 5.3 5.2 5.2 5.3 5.2 5.3 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2
ACMAPQ >= 20 5.6 5.3 4.8 5.1 5.3 5.0 5.2 5.0 5.1 5.1 5.1 5.3 5.2 5.1 5.4 5.3 5.1 5.4 5.1 5.2 5.2 5.1 5.2 5.1 5.0 5.4 5.1 5.1 5.1 5.1 5.1 5.3 5.1 5.4 5.0 5.3 5.2 5.2 5.2 5.2 3.5 7.6 5.2 5.0 5.2 5.1 5.0 5.0 5.2 5.4 5.2 5.4 5.1 5.1 5.5 5.8 5.2 5.3 5.2 5.3 5.4 5.3 5.3 5.3 5.3 5.2 5.3 5.1 5.2 5.2 5.1 5.3 5.1 5.2
ACMAPQ >= 10 5.2 4.9 4.5 4.8 5.1 4.9 5.1 4.7 4.9 4.9 5.0 5.0 5.0 5.1 5.2 5.1 5.2 5.0 4.8 5.0 5.1 5.0 5.0 4.9 5.0 5.1 4.9 4.9 5.0 5.0 5.0 5.3 5.2 5.1 5.0 5.3 5.1 5.1 5.1 5.1 4.2 6.6 5.0 4.8 4.9 4.9 5.0 4.9 5.2 5.4 5.0 5.2 5.0 5.0 5.3 5.2 5.1 5.3 5.4 5.3 5.7 5.4 5.5 5.4 5.3 5.3 5.1 5.2 5.2 5.1 5.2 5.3 5.2 5.3
ACMAPQ >= 3 5.2 4.8 4.5 4.9 5.1 4.9 5.1 4.6 5.1 5.2 5.1 5.1 5.1 5.0 5.3 5.1 5.1 4.9 4.9 5.0 5.1 5.0 5.2 5.1 5.1 5.2 5.1 5.0 5.2 5.1 5.3 5.3 5.3 5.1 5.0 5.2 5.1 5.3 5.1 5.0 4.2 6.7 5.0 5.0 5.0 5.0 5.1 4.9 5.2 5.2 5.0 5.3 4.9 4.9 4.9 4.9 5.0 5.3 5.4 5.3 5.4 5.3 5.3 5.3 5.2 5.2 5.2 5.2 5.2 5.0 5.3 5.4 5.3 5.5
ACMAPQ < 3 5.4 5.2 4.8 5.0 5.2 4.9 5.1 4.9 5.0 5.0 5.1 5.0 5.1 5.1 5.2 5.1 5.2 5.1 5.0 5.1 5.1 5.0 5.1 5.0 5.1 5.2 5.1 5.1 5.1 5.1 5.2 5.2 5.2 5.1 5.1 5.2 5.1 5.2 5.2 5.2 4.3 6.1 5.1 5.1 5.1 5.1 5.1 5.1 5.2 5.3 5.1 5.2 5.2 5.1 5.2 5.2 5.2 5.3 5.3 5.3 5.3 5.2 5.3 5.2 5.2 5.2 5.2 5.2 5.2 5.1 5.2 5.2 5.2 5.2
ACUnmapped 5.3 5.1 4.3 4.2 4.9 4.7 4.5 5.1 4.6 4.6 4.6 4.7 4.6 4.2 5.2 4.6 4.5 4.7 4.5 4.6 4.5 4.7 4.5 4.4 4.0 5.3 4.5 4.5 4.5 4.5 4.5 4.6 11.6 4.7 4.4 4.4 4.4 4.4 4.4 4.4 3.2 3.7 4.4 4.3 4.4 4.3 3.8 3.6 4.8 4.6 4.2 4.3 4.2 4.2 4.4 4.7 4.3 4.3 4.3 4.3 4.3 4.3 4.3 4.2 4.2 4.2 4.3 4.3 4.2 4.3 4.3 4.8 4.4 4.4
AGMAPQ >= 30 9.5 7.7 7.1 7.7 7.6 7.4 7.2 7.2 7.2 7.3 7.4 7.3 7.3 7.3 7.4 7.3 7.4 7.4 7.4 7.4 7.4 7.4 7.5 7.5 7.6 7.5 7.5 7.5 7.5 7.6 7.5 7.5 7.6 7.5 7.5 7.5 7.5 7.5 7.6 7.5 6.3 8.2 7.5 7.5 7.5 7.5 7.6 7.6 7.6 7.6 7.6 7.5 7.5 7.6 7.6 7.5 7.5 7.5 7.5 7.5 7.5 7.6 7.5 7.5 7.5 7.5 7.5 7.6 7.6 7.5 7.6 7.6 7.6 7.6
AGMAPQ >= 20 9.5 7.6 7.0 7.6 7.4 7.3 7.2 7.2 7.2 7.3 7.5 7.1 7.2 7.4 7.3 7.2 7.6 7.4 7.3 7.4 7.4 7.2 7.6 7.5 7.8 7.6 7.4 7.6 7.5 7.7 7.5 7.5 7.9 7.4 7.7 7.5 7.5 7.4 7.5 7.4 5.0 8.9 7.2 7.7 7.3 7.5 7.4 7.6 7.8 7.5 7.4 7.2 7.4 7.5 7.5 7.3 7.4 7.4 7.2 7.3 7.3 7.4 7.3 7.3 7.3 7.6 7.4 7.5 7.5 7.4 7.8 7.7 7.5 7.5
AGMAPQ >= 10 9.6 7.5 6.9 7.4 7.4 7.0 7.0 7.1 7.2 7.4 7.3 7.1 7.2 7.2 7.2 7.0 7.2 7.6 7.4 7.4 7.6 7.2 7.9 7.6 7.9 7.7 7.5 7.7 7.5 7.8 7.4 7.5 7.7 7.4 7.2 7.6 7.4 7.2 7.4 7.5 6.1 8.4 7.1 7.5 7.3 7.4 7.5 7.4 7.7 7.6 7.4 7.3 7.4 7.4 7.6 7.4 7.4 7.5 7.2 7.3 7.4 7.4 7.3 7.4 7.2 7.4 7.4 7.6 7.7 7.4 7.5 7.8 7.5 7.5
AGMAPQ >= 3 8.8 7.2 6.3 7.0 7.1 6.7 7.0 6.9 7.2 7.2 7.4 7.1 7.5 7.3 7.5 7.2 7.6 7.8 7.5 7.5 7.8 7.4 8.1 7.8 7.5 7.3 7.4 7.3 7.2 7.5 7.3 7.5 7.6 7.3 7.0 7.3 7.2 6.9 7.1 6.9 5.6 7.8 6.4 6.9 6.9 7.0 7.3 7.3 7.4 7.4 7.2 7.1 7.2 7.4 7.4 7.6 7.2 7.3 6.9 7.1 7.3 7.4 7.1 7.4 7.0 7.3 7.2 7.3 7.5 7.3 7.6 7.6 7.3 6.9
AGMAPQ < 3 9.2 7.4 6.9 7.3 7.2 7.0 6.9 6.9 7.0 7.1 7.2 7.1 7.2 7.2 7.2 7.1 7.2 7.3 7.2 7.1 7.3 7.1 7.4 7.3 7.3 7.3 7.2 7.3 7.3 7.3 7.2 7.2 7.4 7.3 7.2 7.3 7.2 7.1 7.2 7.2 5.9 7.8 7.0 7.2 7.1 7.2 7.2 7.2 7.4 7.3 7.2 7.1 7.2 7.2 7.2 7.2 7.2 7.2 7.1 7.2 7.2 7.2 7.1 7.2 7.1 7.2 7.2 7.3 7.3 7.2 7.4 7.4 7.3 7.2
AGUnmapped 7.7 6.3 5.3 5.4 6.0 6.0 6.3 13.3 5.7 13.2 6.1 5.8 5.8 6.3 6.1 5.8 5.9 13.2 5.7 5.8 13.2 5.8 5.9 5.8 6.4 6.4 5.9 6.0 6.0 6.0 13.3 5.9 6.1 6.1 6.1 5.9 5.9 5.8 5.8 5.8 4.9 4.5 5.7 5.8 5.7 5.7 5.1 5.2 6.2 6.0 5.8 5.7 5.8 5.7 5.8 6.0 5.9 5.9 5.9 6.0 6.0 6.1 6.1 6.0 6.1 6.2 6.1 6.2 6.1 6.2 6.5 6.9 6.5 6.7
ATMAPQ >= 30 8.0 7.1 7.1 6.8 6.9 6.7 6.8 6.7 6.5 6.5 6.5 6.5 6.4 6.4 6.4 6.3 6.3 6.3 6.3 6.3 6.3 6.2 6.2 6.3 6.2 6.3 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.2 5.1 7.5 6.2 6.2 6.1 6.2 6.1 6.1 6.1 6.2 6.1 6.2 6.1 6.1 6.1 6.2 6.1 6.1 6.1 6.1 6.1 6.0 6.1 6.1 6.1 6.1 6.1 6.1 6.0 6.0 6.0 6.1 6.1 6.1
ATMAPQ >= 20 7.5 6.6 6.6 6.5 6.3 6.3 6.3 6.3 5.9 6.0 6.0 6.3 6.0 5.9 6.1 5.9 5.7 6.1 5.8 5.9 5.9 5.8 5.8 5.9 5.7 6.0 5.8 5.8 5.7 5.7 5.8 5.8 5.6 5.9 5.6 5.8 5.8 5.8 5.8 5.8 3.8 8.4 5.7 5.6 5.7 5.8 5.6 5.5 5.6 5.9 5.5 5.9 5.7 5.6 5.3 6.3 5.7 5.8 5.6 5.7 5.7 5.6 5.7 5.7 5.6 5.6 5.7 5.6 5.5 5.6 5.5 6.0 5.7 5.8
ATMAPQ >= 10 6.9 6.4 6.3 6.0 6.0 5.9 6.1 5.8 5.5 5.6 5.8 5.9 5.6 5.7 5.6 5.6 5.6 5.6 5.4 5.7 5.4 5.3 5.4 5.7 5.4 5.5 5.5 5.6 5.5 5.4 5.4 5.4 5.4 5.5 5.4 5.5 5.5 5.5 5.6 5.7 4.5 7.0 5.4 5.4 5.4 5.5 5.5 5.4 5.4 5.7 5.5 5.5 5.5 5.3 5.6 5.6 5.5 5.7 5.4 5.5 5.4 5.3 5.5 5.5 5.4 5.5 5.3 5.4 5.2 5.2 5.3 5.5 5.5 5.6
ATMAPQ >= 3 7.6 7.1 6.8 6.6 6.5 6.2 6.4 6.3 5.7 6.0 6.2 6.2 6.1 5.9 5.9 5.8 5.8 5.8 5.6 5.7 5.4 5.6 5.6 5.9 5.7 5.9 5.6 5.7 5.6 5.6 5.7 5.8 6.0 6.2 5.9 5.9 5.8 6.0 6.0 6.3 5.0 7.6 5.8 5.6 5.5 5.7 5.5 5.5 5.7 6.0 5.6 5.7 5.6 5.4 5.6 5.8 5.7 6.0 5.8 5.6 5.8 5.9 5.8 6.1 5.8 6.0 5.6 5.7 5.6 5.9 5.7 6.0 6.3 6.3
ATMAPQ < 3 8.0 7.2 7.2 6.8 6.8 6.8 6.9 6.7 6.4 6.4 6.6 6.5 6.4 6.4 6.3 6.4 6.4 6.4 6.3 6.4 6.3 6.3 6.3 6.4 6.3 6.3 6.3 6.4 6.3 6.3 6.3 6.3 6.3 6.3 6.2 6.3 6.4 6.4 6.3 6.4 5.2 7.4 6.3 6.2 6.2 6.3 6.3 6.2 6.2 6.4 6.3 6.3 6.3 6.2 6.3 6.4 6.2 6.3 6.2 6.2 6.3 6.2 6.2 6.3 6.3 6.2 6.2 6.3 6.1 6.2 6.2 6.3 6.3 6.3
ATUnmapped 8.4 14.9 6.8 6.3 6.8 7.1 6.7 7.4 6.5 6.4 6.7 6.8 6.6 5.8 7.0 6.5 6.4 6.5 6.2 6.1 6.2 6.6 6.2 6.1 12.7 7.1 6.2 6.1 6.0 5.9 6.2 6.2 6.0 6.2 5.8 6.1 6.1 6.0 5.9 5.8 4.5 5.2 13.3 5.8 5.8 6.0 5.4 5.0 6.4 13.1 5.9 5.9 5.9 5.6 5.6 6.3 6.0 6.0 5.8 5.7 6.0 5.9 6.0 5.8 5.8 6.0 6.1 6.0 5.8 5.9 6.0 6.7 6.3 6.2
CAMAPQ >= 30 8.1 6.3 7.4 7.5 7.1 7.5 7.1 7.5 7.6 7.5 7.5 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.7 7.6 7.7 7.7 7.8 7.7 7.6 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.6 7.7 7.7 7.7 7.8 7.7 7.7 8.4 6.3 7.7 7.7 7.7 7.7 7.7 7.8 7.7 7.6 7.8 7.7 7.8 7.8 7.7 7.7 7.7 7.7 7.7 7.8 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7
CAMAPQ >= 20 8.1 6.2 7.5 7.4 7.2 7.6 7.2 7.6 7.7 7.7 7.6 7.5 7.8 7.8 7.5 7.7 7.8 7.4 7.8 7.9 7.7 7.6 7.7 8.0 7.8 7.5 7.7 7.8 7.8 7.8 7.8 7.9 7.8 7.4 7.8 7.6 7.8 7.8 7.7 7.7 9.1 5.0 7.8 7.7 7.7 7.8 7.7 7.8 7.6 7.4 7.8 7.7 7.8 7.9 7.8 7.4 7.6 7.7 7.7 7.8 7.7 7.8 7.6 7.7 7.6 7.6 7.5 7.7 7.7 7.7 7.8 7.5 7.7 7.6
CAMAPQ >= 10 8.0 6.2 7.4 7.6 7.3 7.5 7.0 7.8 7.7 7.8 7.7 7.7 7.8 7.7 7.6 7.7 7.9 7.7 7.8 8.0 7.6 7.7 7.7 8.1 7.6 7.8 7.9 7.9 8.1 8.0 8.0 8.1 7.9 7.6 8.1 8.0 8.0 8.1 7.8 7.8 8.5 6.1 7.9 7.7 7.9 7.8 7.7 8.0 8.0 7.6 7.9 7.6 7.9 8.1 7.7 7.8 7.7 7.7 7.9 8.0 7.8 8.1 7.7 7.8 7.6 7.7 7.9 7.9 7.8 7.8 8.0 7.8 7.8 7.7
CAMAPQ >= 3 8.1 6.1 7.7 7.6 7.3 7.8 7.1 8.0 7.8 7.9 7.7 7.8 7.7 7.5 7.5 7.3 7.4 7.3 7.3 7.4 7.4 7.8 7.5 7.7 7.4 7.4 7.6 7.8 7.9 7.9 8.0 7.9 7.8 7.6 8.0 8.2 8.2 7.9 7.6 7.5 8.3 5.9 7.6 7.4 7.7 7.7 7.6 7.7 7.6 7.4 7.7 7.3 7.5 7.6 7.3 7.2 7.3 7.2 7.3 7.6 7.6 7.6 7.3 7.2 7.2 7.4 7.4 7.6 7.7 7.6 7.6 7.5 7.6 7.6
CAMAPQ < 3 8.1 6.3 7.5 7.6 7.3 7.6 7.1 7.7 7.8 7.8 7.7 7.7 7.7 7.6 7.7 7.7 7.6 7.6 7.7 7.8 7.7 7.7 7.7 7.8 7.7 7.6 7.8 7.9 7.8 7.9 7.9 8.0 7.9 7.7 7.9 7.9 7.9 7.8 7.8 7.8 8.2 6.2 7.8 7.7 7.8 7.8 7.7 7.9 7.8 7.7 7.8 7.7 7.8 7.9 7.7 7.7 7.8 7.7 7.8 7.9 7.8 7.8 7.7 7.7 7.7 7.7 7.8 7.7 7.8 7.7 7.8 7.8 7.7 7.7
CAUnmapped 7.5 5.8 5.9 6.0 6.7 6.9 6.5 6.0 6.8 6.9 6.6 6.5 6.5 6.8 5.9 6.6 13.9 6.2 6.6 14.0 6.7 6.3 6.4 6.4 6.9 5.6 6.4 6.3 6.3 6.5 6.5 6.3 6.4 6.1 6.4 6.3 6.2 6.1 6.2 6.4 5.0 10.1 6.1 6.2 6.3 6.3 5.3 5.6 5.5 6.1 6.2 6.1 5.9 6.1 6.5 6.1 6.1 6.1 6.2 6.4 6.3 6.2 6.1 6.2 6.3 6.3 6.2 6.1 6.2 6.2 6.6 6.1 6.2 6.3
CCMAPQ >= 30 5.7 5.4 5.6 5.3 5.6 5.8 6.0 6.1 5.9 6.0 6.1 6.2 6.1 6.3 6.3 6.3 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.3 6.4 6.4 6.4 6.4 5.2 5.2 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.5 6.4 6.4 6.4 6.5 6.5 6.5 6.6 6.5 6.5 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.6 6.5 6.5 6.6 6.6
CCMAPQ >= 20 5.7 5.6 5.6 5.3 5.7 6.0 6.0 6.2 6.1 6.2 6.1 6.1 6.1 6.4 6.3 6.6 6.4 6.4 6.7 6.7 6.6 6.7 6.7 6.6 6.5 6.5 6.8 6.8 6.7 6.7 6.6 6.5 6.4 6.5 6.5 6.4 6.7 6.6 6.6 6.6 4.4 4.4 6.8 6.7 6.7 6.9 6.7 6.6 6.5 6.6 6.8 6.8 6.8 6.7 6.6 6.4 6.8 6.7 6.9 7.0 6.9 6.9 6.9 7.1 7.1 6.9 6.9 7.1 7.1 7.1 6.8 6.8 7.1 7.3
CCMAPQ >= 10 6.0 5.8 5.9 5.6 5.9 6.4 6.4 6.6 6.5 6.7 6.6 6.4 6.3 6.8 6.6 7.0 7.2 7.3 7.2 7.2 7.2 7.4 7.3 6.9 7.3 7.4 7.6 7.4 7.3 7.5 7.3 7.1 7.2 7.5 7.5 7.2 7.5 7.2 7.3 7.3 6.0 6.1 7.6 7.7 7.7 7.8 7.6 7.6 7.5 7.6 7.6 7.3 7.5 7.4 7.3 7.4 7.5 7.4 7.7 7.9 7.6 7.7 7.8 7.9 7.9 8.0 7.9 8.0 7.9 7.8 7.7 7.9 8.1 8.3
CCMAPQ >= 3 5.8 5.8 5.7 5.6 5.9 6.2 6.4 6.8 6.7 6.8 6.9 6.4 6.3 6.7 6.4 6.9 7.2 7.2 7.2 7.2 7.1 7.1 6.8 6.7 7.1 7.1 7.2 7.2 7.1 7.0 6.7 6.8 6.9 7.3 7.4 7.3 7.4 7.1 7.3 7.3 5.9 6.2 7.8 8.2 8.2 8.5 8.3 8.2 8.2 8.1 8.1 7.9 7.8 7.5 7.3 7.3 7.4 7.3 7.5 7.5 7.1 7.1 7.0 7.2 7.1 7.2 7.3 7.4 7.2 7.1 7.1 7.5 8.0 8.2
CCMAPQ < 3 5.7 5.5 5.7 5.4 5.7 5.9 6.0 6.3 6.2 6.3 6.2 6.2 6.1 6.4 6.4 6.5 6.5 6.6 6.6 6.6 6.6 6.6 6.6 6.5 6.6 6.6 6.7 6.6 6.6 6.7 6.6 6.5 6.5 6.6 6.6 6.5 6.6 6.6 6.6 6.6 5.4 5.4 6.7 6.8 6.8 6.8 6.8 6.8 6.7 6.8 6.8 6.7 6.7 6.7 6.6 6.6 6.7 6.7 6.7 6.8 6.7 6.7 6.8 6.8 6.8 6.8 6.8 6.8 6.8 6.8 6.8 6.8 6.9 7.0
CCUnmapped 4.9 4.5 4.2 4.2 4.9 4.9 4.4 4.6 5.1 5.0 4.8 4.8 4.9 4.5 4.5 5.0 4.9 4.9 5.2 5.2 5.0 4.8 5.0 5.2 4.4 4.3 5.1 12.4 5.3 5.3 5.2 5.1 5.1 12.4 5.4 5.3 5.4 5.5 5.7 5.7 4.0 4.0 5.8 6.0 6.1 6.1 5.5 5.3 5.6 6.3 6.5 6.5 13.7 6.6 6.1 6.2 6.0 6.1 6.2 6.2 6.1 6.0 6.1 6.2 6.2 6.0 5.9 6.0 6.2 6.1 5.7 5.6 6.0 6.2
CGMAPQ >= 30 1.1 1.0 1.2 1.3 1.3 1.4 1.2 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.4 1.3 1.2 1.4 1.4 1.4 1.4 1.4 1.4 1.5 1.4 1.5 1.4 1.4 1.5 1.5 1.5 1.4 1.4 1.4 1.4 1.4 1.5 1.4 1.4 1.5 1.5 1.4 1.4 1.4 1.4 1.5 1.4 1.4 1.4
CGMAPQ >= 20 1.6 1.4 1.6 1.8 1.9 2.0 1.8 2.0 2.0 1.9 2.4 1.9 1.9 2.1 1.9 2.0 2.6 1.9 1.9 1.9 2.0 2.0 2.0 1.9 2.1 1.9 1.9 2.0 1.9 2.0 1.9 2.0 2.4 2.0 2.6 2.1 2.0 2.0 2.0 2.0 1.6 1.4 2.0 2.5 2.0 2.0 2.0 2.1 2.5 2.0 2.2 2.4 2.0 2.1 2.8 3.1 2.0 2.0 2.0 2.0 2.0 2.1 2.0 2.0 2.1 2.6 2.1 2.0 2.0 2.0 2.6 2.2 1.9 2.0
CGMAPQ >= 10 1.9 1.7 2.0 2.3 2.3 2.4 2.2 2.6 2.4 2.3 2.4 2.3 2.4 2.4 2.3 2.5 2.3 2.3 2.3 2.4 2.4 2.5 2.4 2.4 2.3 2.3 2.3 2.4 2.4 2.4 2.3 2.5 2.4 2.3 2.5 2.5 2.4 2.5 2.5 2.6 2.0 2.0 2.5 2.6 2.5 2.4 2.4 2.5 2.5 2.4 2.4 2.5 2.4 2.6 2.5 2.6 2.4 2.4 2.4 2.4 2.4 2.5 2.4 2.4 2.4 2.4 2.4 2.4 2.4 2.4 2.5 2.4 2.2 2.3
CGMAPQ >= 3 1.8 1.6 1.9 2.1 2.2 2.3 2.2 2.7 2.3 2.1 2.3 2.2 2.2 2.3 2.3 2.5 2.3 2.3 2.3 2.6 2.5 2.7 2.6 2.5 2.3 2.3 2.4 2.4 2.4 2.6 2.4 2.5 2.4 2.3 2.5 2.5 2.5 2.6 2.5 2.6 2.0 1.8 2.5 2.6 2.6 2.4 2.5 2.5 2.5 2.5 2.5 2.6 2.6 2.8 2.5 2.7 2.3 2.4 2.5 2.4 2.5 2.4 2.3 2.2 2.1 2.3 2.2 2.4 2.4 2.4 2.5 2.3 2.2 2.2
CGMAPQ < 3 1.6 1.4 1.7 1.9 1.9 2.0 1.7 2.1 2.0 1.9 2.0 1.9 1.9 2.0 1.9 2.0 2.0 1.9 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.0 2.1 2.0 2.0 2.0 2.0 2.0 1.8 1.6 2.0 2.1 2.0 2.0 2.0 2.0 2.1 2.0 2.1 2.1 2.0 2.1 2.1 2.2 1.9 2.0 2.0 2.0 2.0 2.1 2.0 1.9 2.0 2.1 2.0 2.0 2.0 2.0 2.1 2.0 1.9 2.0
CGUnmapped 1.9 1.6 1.8 9.3 2.0 2.2 2.8 2.2 2.2 2.2 2.4 9.5 2.1 3.3 2.2 2.1 2.3 2.2 2.2 2.2 2.4 2.1 2.2 2.2 3.4 2.3 2.2 2.3 9.6 2.3 2.2 2.2 2.5 2.4 9.7 2.3 2.3 2.3 2.4 9.5 2.6 1.9 2.3 2.4 2.3 2.4 9.5 2.5 2.6 2.4 2.5 2.5 2.5 9.8 2.7 2.8 2.5 2.4 2.5 2.6 2.5 2.6 2.5 2.6 2.6 2.8 2.7 2.6 2.7 2.7 3.0 2.9 2.8 2.8
CTMAPQ >= 30 7.7 7.2 7.3 7.2 7.0 7.3 7.3 7.5 7.3 7.4 7.4 7.5 7.5 7.4 7.5 7.5 7.4 7.5 7.5 7.5 7.6 7.5 7.5 7.5 7.5 7.5 7.5 7.5 7.5 7.5 7.5 7.5 7.6 7.5 7.5 7.5 7.5 7.5 7.5 7.5 6.2 6.2 7.6 7.6 7.6 7.6 7.6 7.5 7.4 7.5 7.5 7.6 7.6 7.5 7.4 7.5 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.6 7.5 7.5 7.5 7.5
CTMAPQ >= 20 7.5 7.1 7.3 7.1 6.9 7.3 7.2 7.4 7.2 7.3 7.0 7.4 7.5 7.2 7.5 7.6 7.1 7.3 7.6 7.5 7.7 7.5 7.5 7.5 7.2 7.3 7.6 7.5 7.4 7.4 7.3 7.3 7.3 7.0 7.2 7.1 7.4 7.5 7.5 7.4 5.0 5.1 7.6 7.4 7.4 7.6 7.6 7.2 7.0 7.4 7.3 7.6 7.6 7.3 6.7 7.3 7.6 7.6 7.5 7.5 7.6 7.5 7.5 7.5 7.5 7.2 7.3 7.4 7.5 7.3 7.0 7.1 7.3 7.2
CTMAPQ >= 10 7.6 7.2 7.5 7.3 6.9 7.3 7.3 7.5 7.0 7.2 7.2 7.9 7.7 7.5 7.9 7.7 7.4 7.8 7.6 7.3 7.7 7.7 7.5 7.4 7.2 7.4 7.6 7.5 7.3 7.4 7.4 7.3 7.8 7.3 7.6 7.3 7.4 7.6 7.6 7.4 6.2 6.4 7.7 7.9 7.6 7.7 8.1 7.6 7.4 7.8 7.8 7.9 7.9 7.4 7.5 7.6 7.9 8.0 7.7 7.8 8.0 7.8 7.8 7.7 7.9 7.7 7.7 7.6 7.7 7.3 7.2 7.1 7.2 7.1
CTMAPQ >= 3 7.3 7.1 7.4 7.3 6.9 7.0 6.7 7.0 6.7 7.0 6.9 7.8 7.5 7.2 7.5 7.2 7.2 7.4 7.4 7.2 7.5 7.3 7.1 7.0 7.1 7.2 7.4 7.0 7.0 6.8 6.8 6.6 6.9 6.7 7.2 6.9 7.2 7.3 7.3 7.4 6.0 6.3 7.7 7.7 7.6 7.3 7.7 7.3 7.0 7.6 7.7 7.9 8.1 7.4 7.6 7.4 7.9 8.0 7.9 7.9 8.0 7.6 7.6 7.5 7.6 7.6 7.5 7.6 7.3 7.0 6.8 6.6 6.7 6.8
CTMAPQ < 3 7.3 6.9 7.1 7.0 6.8 7.1 7.0 7.2 6.9 7.0 7.0 7.3 7.3 7.2 7.4 7.3 7.2 7.3 7.3 7.2 7.3 7.3 7.2 7.1 7.1 7.2 7.2 7.2 7.1 7.1 7.1 7.1 7.3 7.0 7.2 7.1 7.2 7.2 7.2 7.2 5.8 6.0 7.3 7.4 7.3 7.3 7.4 7.2 7.1 7.3 7.3 7.4 7.4 7.2 7.2 7.2 7.4 7.4 7.4 7.4 7.5 7.4 7.4 7.4 7.4 7.3 7.3 7.3 7.3 7.2 7.1 7.1 7.1 7.1
CTUnmapped 6.5 6.0 5.4 5.5 5.9 6.2 5.6 5.8 6.1 6.1 5.8 5.9 6.1 5.2 5.2 6.0 5.8 5.8 5.9 5.8 5.7 5.7 5.8 5.7 4.9 4.9 5.6 5.6 5.6 5.6 5.6 5.6 5.4 5.3 5.5 5.5 5.6 5.6 5.6 5.6 3.9 3.9 5.6 5.6 12.8 5.6 4.8 4.5 4.6 5.3 5.3 5.4 5.4 5.3 5.2 5.5 12.7 5.5 5.5 12.7 5.5 5.5 12.6 5.4 5.3 5.3 5.3 5.3 5.3 5.2 5.1 5.2 5.4 5.3
GAMAPQ >= 30 6.1 6.6 6.2 6.2 6.2 6.2 6.1 5.7 5.9 5.9 5.9 5.9 5.8 5.9 5.8 5.9 5.9 5.9 5.9 5.9 5.8 6.0 6.0 6.0 6.0 5.9 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.0 6.1 6.1 6.0 6.0 6.0 6.1 7.1 5.1 6.0 6.0 6.1 6.0 6.0 6.1 6.1 6.1 6.0 6.1 6.0 6.1 6.1 6.1 6.1 6.0 6.1 6.1 6.1 6.1 6.1 6.0 6.1 6.1 6.1 6.0 6.0 6.1 6.1 6.1 6.1 6.1
GAMAPQ >= 20 6.4 6.8 6.4 6.3 6.3 6.4 6.3 5.9 6.2 6.2 6.2 6.4 6.0 6.2 6.1 6.0 6.2 6.5 6.1 6.1 6.0 6.2 6.2 6.3 6.4 6.2 6.4 6.2 6.4 6.2 6.3 6.4 6.4 6.6 6.4 6.7 6.3 6.3 6.3 6.5 8.4 4.3 6.3 6.2 6.7 6.3 6.3 6.4 6.7 6.7 6.3 6.3 6.2 6.4 6.7 6.9 6.5 6.3 6.4 6.3 6.3 6.3 6.4 6.3 6.3 6.3 6.8 6.2 6.2 6.3 6.6 6.9 6.5 6.4
GAMAPQ >= 10 6.2 6.6 6.1 6.4 6.1 6.4 6.3 5.8 6.3 6.1 6.0 6.0 5.9 6.1 5.9 6.0 6.1 6.1 6.1 6.1 6.0 6.4 6.5 6.5 6.5 6.2 6.5 6.2 6.5 6.3 6.3 6.6 6.5 6.3 6.6 6.4 6.3 6.5 6.5 6.7 7.9 5.2 6.4 6.4 6.5 6.6 6.4 6.6 6.8 6.6 6.3 6.5 6.3 6.6 6.8 6.7 6.8 6.5 6.7 6.6 6.6 6.5 6.7 6.3 6.5 6.3 6.6 6.3 6.2 6.4 6.7 6.7 6.8 6.4
GAMAPQ >= 3 5.9 6.0 5.6 5.6 5.3 5.9 5.9 5.6 5.8 5.8 5.8 5.8 5.6 5.9 5.8 6.1 6.2 6.1 6.3 6.3 6.3 6.6 6.8 6.6 6.6 6.3 6.7 6.2 6.7 6.5 6.5 7.0 6.7 6.3 6.5 6.3 6.2 6.7 6.4 6.7 7.7 4.8 6.1 5.9 6.4 6.5 6.4 6.7 6.8 6.4 6.1 6.2 6.2 6.5 6.9 6.7 6.9 6.4 6.5 6.4 6.5 6.5 6.9 6.1 6.4 6.2 6.3 6.1 6.3 6.7 6.9 7.1 6.8 6.4
GAMAPQ < 3 6.5 7.0 6.4 6.5 6.4 6.5 6.4 6.0 6.3 6.3 6.2 6.3 6.1 6.3 6.2 6.3 6.4 6.3 6.3 6.4 6.3 6.5 6.5 6.5 6.5 6.4 6.6 6.4 6.5 6.5 6.4 6.5 6.5 6.4 6.6 6.5 6.5 6.5 6.5 6.6 7.3 5.3 6.4 6.5 6.5 6.5 6.4 6.6 6.6 6.6 6.4 6.5 6.4 6.6 6.7 6.6 6.7 6.5 6.5 6.5 6.5 6.5 6.6 6.5 6.5 6.4 6.6 6.4 6.4 6.5 6.6 6.7 6.6 6.5
GAUnmapped 13.8 6.5 5.2 5.4 6.0 13.4 6.1 5.9 13.1 5.8 5.8 5.9 5.5 6.2 6.5 5.7 5.8 5.7 5.6 5.7 5.9 5.9 12.9 5.8 6.5 6.6 6.0 5.8 6.0 13.3 6.0 13.2 5.9 6.0 5.9 6.0 5.8 5.6 5.7 5.9 4.8 5.1 5.5 5.6 5.8 5.7 5.0 5.5 6.6 5.8 5.7 5.7 5.5 5.7 6.2 5.9 5.9 5.7 5.8 6.0 6.0 6.0 5.9 6.0 6.1 12.9 6.4 6.0 6.1 6.2 6.7 6.6 6.3 6.5
GCMAPQ >= 30 4.9 4.9 4.8 4.7 5.0 4.9 5.2 4.9 5.0 5.1 5.2 5.2 5.2 5.2 5.3 5.3 5.3 5.3 5.3 5.4 5.3 5.4 5.3 5.3 5.3 5.4 5.4 5.4 5.4 5.4 5.4 5.4 5.3 5.4 5.4 5.4 5.4 5.4 5.4 5.4 4.4 4.6 5.4 5.4 5.4 5.4 5.4 5.4 5.4 5.5 5.4 5.5 5.4 5.4 5.5 5.5 5.4 5.4 5.4 5.4 5.4 5.4 5.5 5.4 5.4 5.4 5.4 5.4 5.4 5.4 5.4 5.4 5.4 5.4
GCMAPQ >= 20 5.3 5.2 5.1 4.9 5.4 5.2 5.6 5.3 5.3 5.5 5.4 5.8 5.5 5.5 5.8 5.6 5.4 6.0 5.6 5.8 5.7 5.7 5.7 5.7 5.4 5.9 5.7 5.7 5.7 5.7 5.9 5.9 5.5 6.0 5.5 6.0 5.7 5.8 5.7 5.7 3.8 4.0 5.7 5.7 6.0 5.8 5.6 5.5 5.6 5.9 5.9 5.8 5.6 5.5 5.9 5.9 5.7 5.7 5.7 5.7 5.6 5.6 5.7 5.6 5.6 5.5 5.9 5.7 5.6 5.7 5.6 5.9 5.6 5.5
GCMAPQ >= 10 6.0 5.8 5.8 5.4 5.9 5.6 6.3 5.6 5.7 5.9 6.0 6.1 6.1 6.1 6.2 6.1 6.0 6.0 6.0 6.2 6.3 6.2 6.1 6.2 5.8 6.4 6.1 6.1 6.3 6.2 6.5 6.6 6.0 6.3 6.1 6.2 6.3 6.4 6.2 6.1 5.0 5.3 6.2 6.4 6.3 6.5 6.2 6.1 6.0 6.2 6.0 6.4 6.0 5.9 6.3 6.2 6.2 6.1 6.1 6.0 6.2 6.2 6.3 6.0 6.0 6.0 6.2 6.3 6.1 6.3 6.3 6.1 6.1 6.1
GCMAPQ >= 3 6.0 5.6 5.6 5.2 5.7 5.4 6.3 5.7 5.6 5.7 5.7 5.7 5.5 5.7 5.8 5.7 5.7 5.6 5.7 5.7 5.9 5.8 5.8 6.0 5.5 5.8 5.4 5.5 5.7 5.6 5.9 5.9 5.7 6.1 5.9 5.9 5.9 6.0 5.9 5.9 4.7 5.0 5.7 5.9 5.8 5.8 5.5 5.6 5.7 6.0 5.8 6.0 5.7 5.6 5.9 6.0 5.8 5.7 5.6 5.7 5.8 5.8 5.9 5.6 6.0 5.9 6.4 6.4 6.1 6.2 6.1 6.1 5.9 5.9
GCMAPQ < 3 5.2 5.0 4.9 4.8 5.1 4.9 5.3 5.0 5.1 5.2 5.2 5.3 5.3 5.3 5.4 5.3 5.3 5.3 5.3 5.3 5.3 5.4 5.3 5.4 5.2 5.4 5.3 5.3 5.4 5.4 5.5 5.6 5.3 5.4 5.4 5.4 5.4 5.5 5.3 5.3 4.3 4.6 5.4 5.4 5.4 5.5 5.3 5.3 5.3 5.5 5.3 5.5 5.3 5.2 5.5 5.4 5.4 5.3 5.4 5.3 5.4 5.4 5.5 5.3 5.3 5.4 5.5 5.5 5.4 5.4 5.4 5.4 5.4 5.4
GCUnmapped 4.1 3.9 3.5 3.5 4.2 4.0 3.9 4.6 4.1 4.2 11.5 4.4 4.2 3.7 4.8 4.2 4.1 4.4 11.6 4.3 4.1 4.3 4.1 4.2 3.6 4.8 11.5 4.2 4.2 4.2 4.2 4.2 4.0 4.3 4.1 4.3 4.2 4.3 11.4 4.3 8.7 3.7 4.2 4.1 4.2 4.2 3.6 3.5 4.6 4.3 4.3 11.5 4.2 4.2 4.5 4.5 4.3 4.3 4.4 4.4 4.5 11.4 4.4 4.4 4.4 4.4 4.5 4.4 4.4 4.4 4.4 4.6 4.4 4.5
GGMAPQ >= 30 6.6 6.3 6.2 5.8 6.0 6.3 6.0 5.8 6.1 6.1 6.1 6.0 6.0 6.1 6.2 6.2 6.3 6.4 6.4 6.4 6.4 6.3 6.3 6.4 6.4 6.5 6.4 6.4 6.4 6.5 6.5 6.4 6.5 6.6 6.5 6.5 6.5 6.5 6.5 6.6 5.5 5.5 6.5 6.5 6.6 6.5 6.6 6.6 6.7 6.7 6.7 6.6 6.6 6.6 6.6 6.6 6.5 6.5 6.5 6.6 6.6 6.6 6.6 6.5 6.5 6.6 6.6 6.6 6.7 6.7 6.7 6.7 6.6 6.6
GGMAPQ >= 20 7.3 6.8 6.6 6.1 6.6 6.9 6.5 6.2 6.7 6.8 6.8 6.5 6.3 6.5 6.7 6.6 6.9 7.0 6.8 6.7 6.8 6.7 6.7 7.0 7.1 7.2 6.9 7.0 7.0 7.1 7.3 7.0 7.3 7.4 7.3 7.3 7.2 7.0 7.1 7.3 5.0 5.0 7.1 7.3 7.4 7.1 7.2 7.4 7.7 7.5 7.4 7.2 7.1 7.3 7.4 7.0 6.9 6.9 7.0 6.9 7.0 6.9 6.9 6.9 6.9 7.1 7.0 7.0 7.2 7.2 7.2 7.2 7.2 7.1
GGMAPQ >= 10 8.5 7.9 7.5 6.9 7.4 8.0 7.2 6.8 7.7 7.8 7.4 6.9 6.8 7.1 7.4 7.1 7.2 7.4 7.8 7.7 7.7 7.4 7.4 7.9 7.9 8.0 7.6 7.8 7.8 8.1 8.3 7.7 7.8 8.1 7.8 7.6 7.9 7.6 7.6 7.9 6.5 6.3 7.5 7.5 7.7 7.3 7.6 7.6 7.6 7.6 7.7 7.4 7.4 7.5 7.4 7.3 7.1 7.0 7.2 7.0 7.1 6.8 6.8 6.8 6.8 7.0 6.8 6.8 7.2 7.4 7.1 7.2 7.1 7.1
GGMAPQ >= 3 8.6 7.6 7.0 6.4 6.9 7.5 6.7 6.3 7.0 7.2 6.6 6.3 6.4 6.8 7.2 7.2 7.1 7.6 7.9 7.7 7.8 7.7 7.8 8.3 8.4 8.4 8.0 8.4 8.6 8.5 9.0 8.2 8.2 8.0 7.3 7.3 7.7 7.2 7.4 7.5 6.1 6.0 7.0 6.9 7.3 7.1 7.4 7.4 7.5 7.3 7.4 7.3 7.2 7.4 7.5 7.4 7.3 7.2 7.3 7.1 7.1 6.9 6.9 7.1 6.9 7.0 6.8 6.7 7.0 7.2 6.9 7.0 6.8 6.9
GGMAPQ < 3 7.4 6.7 6.5 6.1 6.4 6.7 6.2 6.0 6.4 6.5 6.4 6.2 6.2 6.4 6.5 6.5 6.5 6.7 6.7 6.7 6.8 6.6 6.6 6.9 6.9 7.0 6.8 6.9 6.9 6.9 7.1 6.8 6.9 7.0 6.9 6.8 6.9 6.7 6.8 6.8 5.7 5.6 6.7 6.7 6.8 6.6 6.8 6.8 6.9 6.8 6.9 6.7 6.7 6.8 6.8 6.7 6.6 6.6 6.6 6.6 6.6 6.5 6.5 6.5 6.5 6.6 6.6 6.5 6.6 6.7 6.6 6.7 6.7 6.7
GGUnmapped 5.7 5.1 4.4 4.3 12.4 5.1 5.2 5.1 5.0 5.1 5.2 5.1 12.4 5.6 5.6 5.1 5.1 5.2 5.3 5.2 5.4 12.6 5.3 5.6 6.0 6.1 5.7 5.9 6.1 6.2 6.4 6.3 6.5 6.7 6.9 7.1 6.9 14.0 6.9 7.0 5.8 5.6 6.9 7.1 7.1 7.0 6.4 6.7 7.5 7.5 7.7 7.7 7.9 8.1 8.1 7.8 7.8 8.0 8.1 8.2 8.3 8.2 8.5 8.5 8.6 8.9 8.6 8.7 8.9 8.9 8.5 8.3 8.8 8.8
GTMAPQ >= 30 5.9 5.3 5.0 5.2 5.3 5.2 5.4 5.3 5.1 5.2 5.2 5.2 5.1 5.1 5.2 5.2 5.2 5.3 5.2 5.3 5.3 5.3 5.2 5.2 5.3 5.3 5.3 5.3 5.3 5.3 5.3 5.3 5.3 5.3 5.3 5.3 5.3 5.3 5.2 5.2 4.3 4.4 5.2 5.2 5.2 5.2 5.2 5.2 5.1 5.3 5.1 5.2 5.2 5.1 5.2 5.2 5.2 5.2 5.1 5.1 5.1 5.1 5.2 5.2 5.2 5.2 5.2 5.1 5.2 5.2 5.2 5.2 5.2 5.2
GTMAPQ >= 20 6.1 5.5 5.1 5.4 5.3 5.3 5.5 5.5 5.3 5.4 5.3 5.8 5.2 5.2 5.4 5.3 5.2 5.9 5.2 5.3 5.4 5.4 5.2 5.2 5.3 5.6 5.3 5.3 5.4 5.3 5.4 5.4 5.2 5.7 5.2 5.7 5.3 5.3 5.2 5.2 3.5 3.7 5.2 5.1 5.5 5.1 5.0 5.0 5.1 5.5 4.9 5.2 5.1 5.1 4.8 5.5 5.1 5.0 5.0 4.9 5.0 4.9 5.0 5.0 5.0 4.9 5.4 5.0 5.0 5.1 4.9 5.4 5.1 5.0
GTMAPQ >= 10 6.3 5.8 5.3 5.7 5.4 5.3 5.8 5.7 5.5 5.6 5.6 5.8 5.4 5.4 5.4 5.4 5.5 5.4 5.2 5.5 5.4 5.4 5.3 5.3 5.5 5.4 5.4 5.2 5.3 5.1 5.3 5.2 5.3 5.3 5.4 5.2 5.1 5.3 5.1 5.1 4.4 4.4 5.2 5.1 5.1 5.0 4.9 5.0 4.9 5.1 4.9 5.0 5.1 5.0 5.0 5.0 5.0 4.8 4.7 4.7 4.5 4.7 4.8 4.9 4.9 4.8 4.8 4.9 4.9 5.1 4.9 4.8 5.0 4.8
GTMAPQ >= 3 6.4 5.8 5.5 5.6 5.4 5.4 5.7 5.6 5.4 5.5 5.6 5.5 5.2 5.5 5.4 5.4 5.4 5.4 5.3 5.4 5.3 5.4 5.2 5.4 5.5 5.4 5.4 5.3 5.3 5.3 5.5 5.4 5.4 5.4 5.4 5.2 5.1 5.3 5.1 5.1 4.3 4.5 5.5 5.3 5.2 5.2 5.2 5.2 5.0 5.2 5.0 5.1 5.2 5.2 5.2 5.1 5.2 4.8 4.7 4.8 4.5 4.8 5.0 5.2 5.1 5.0 5.0 4.8 5.0 5.1 5.0 4.9 5.1 4.7
GTMAPQ < 3 6.1 5.4 5.1 5.3 5.3 5.2 5.5 5.3 5.2 5.3 5.3 5.3 5.2 5.2 5.2 5.3 5.2 5.3 5.2 5.3 5.3 5.3 5.1 5.2 5.3 5.3 5.3 5.2 5.2 5.2 5.2 5.3 5.2 5.3 5.3 5.3 5.2 5.2 5.1 5.1 4.2 4.4 5.2 5.1 5.1 5.1 5.1 5.1 5.0 5.2 5.0 5.1 5.1 5.0 5.1 5.0 5.1 5.0 5.0 4.9 4.9 4.9 5.0 5.0 5.0 5.0 5.1 5.0 5.0 5.1 5.0 5.0 5.0 5.0
GTUnmapped 5.7 4.7 4.1 4.2 4.7 4.6 4.5 5.4 4.5 4.6 4.5 4.9 4.6 11.4 5.5 4.6 4.5 4.7 4.6 4.5 4.5 4.7 4.5 4.5 4.1 5.4 4.5 4.5 4.5 4.5 4.5 4.6 4.5 4.8 4.7 11.8 4.6 4.6 4.5 4.5 3.3 4.2 4.5 4.5 4.6 4.5 4.0 10.9 5.2 4.5 4.3 4.5 4.4 4.4 11.1 4.5 4.5 4.4 4.4 4.3 4.4 4.4 4.5 4.4 4.3 4.4 4.5 4.3 4.4 4.3 4.3 4.6 4.4 4.4
TAMAPQ >= 30 4.9 5.9 5.9 6.1 5.8 5.6 5.5 5.5 5.6 5.4 5.4 5.4 5.4 5.4 5.4 5.4 5.3 5.3 5.3 5.3 5.3 5.4 5.3 5.2 5.3 5.3 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 6.7 4.2 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.0 5.1 5.0 5.1 5.1 5.1 5.1 5.0 5.1 5.0 5.0 5.0 5.1 5.0 5.0 5.1 5.1 5.0 5.0 5.0 5.0 5.0 5.0 5.0 5.0
TAMAPQ >= 20 4.2 5.1 5.2 5.2 4.9 4.8 4.7 4.6 4.7 4.6 4.7 4.5 4.6 4.7 4.6 4.6 4.8 4.4 4.5 4.6 4.5 4.8 4.5 4.4 4.7 4.4 4.3 4.4 4.4 4.4 4.4 4.4 4.6 4.2 4.4 4.2 4.3 4.3 4.3 4.3 7.1 2.7 4.3 4.4 4.2 4.3 4.3 4.3 4.4 4.1 4.4 4.1 4.3 4.3 4.8 4.0 4.2 4.2 4.3 4.3 4.2 4.3 4.3 4.2 4.3 4.5 4.1 4.3 4.3 4.3 4.6 4.1 4.2 4.2
TAMAPQ >= 10 3.9 4.6 4.6 4.7 4.4 4.4 4.0 4.1 4.2 4.2 4.1 4.1 4.2 4.2 4.3 4.3 4.0 4.1 4.0 4.1 3.9 4.3 4.0 3.9 4.0 4.0 3.7 3.8 3.7 3.6 3.8 3.7 3.6 3.7 3.6 3.7 3.6 3.5 3.7 3.7 5.2 2.9 3.6 3.6 3.7 3.7 3.5 3.8 3.8 3.7 3.9 3.7 3.7 3.8 3.7 3.6 3.7 3.8 3.8 4.0 3.9 3.8 3.9 3.8 3.9 4.0 3.9 3.9 3.8 3.9 3.9 3.8 3.7 3.8
TAMAPQ >= 3 4.2 5.1 5.3 5.4 5.1 5.1 4.7 4.8 4.9 4.7 4.7 4.8 4.9 5.1 4.8 5.0 4.6 4.6 4.5 4.5 4.4 4.5 4.4 4.2 4.3 4.2 3.9 3.9 3.8 4.0 4.1 4.1 4.0 4.0 3.9 4.0 3.7 3.7 4.0 4.1 5.7 3.2 4.0 4.1 4.0 3.9 3.8 4.0 4.1 4.0 4.3 4.1 4.1 4.1 4.1 4.0 4.2 4.4 4.5 4.5 4.7 4.5 4.5 4.4 4.6 4.6 4.6 4.6 4.4 4.5 4.5 4.3 4.2 4.3
TAMAPQ < 3 4.2 5.1 5.1 5.3 5.0 4.8 4.7 4.7 4.7 4.7 4.6 4.7 4.6 4.7 4.7 4.7 4.6 4.5 4.6 4.6 4.5 4.7 4.5 4.5 4.5 4.5 4.4 4.4 4.4 4.3 4.4 4.4 4.4 4.3 4.3 4.4 4.3 4.3 4.4 4.4 5.7 3.5 4.3 4.4 4.4 4.3 4.3 4.4 4.4 4.3 4.4 4.4 4.4 4.4 4.4 4.3 4.3 4.4 4.4 4.5 4.4 4.4 4.4 4.4 4.4 4.5 4.4 4.4 4.4 4.5 4.4 4.4 4.3 4.3
TAUnmapped 4.2 5.4 4.5 4.8 5.1 4.8 5.4 4.5 4.8 4.8 4.8 4.6 4.6 5.4 4.2 4.6 4.7 4.4 4.5 4.4 4.6 4.4 4.4 4.3 5.3 4.0 4.3 4.3 4.3 4.3 4.2 4.2 4.5 4.2 4.2 4.1 4.1 4.2 4.1 4.1 3.7 3.1 4.1 4.1 4.0 4.1 3.6 4.1 10.9 4.0 4.0 3.9 3.9 4.0 4.4 4.0 4.1 4.0 4.1 4.0 4.0 4.1 4.0 4.0 4.1 4.2 4.1 4.0 4.0 4.0 4.4 3.9 4.0 4.1
TCMAPQ >= 30 3.7 5.8 5.9 5.9 6.1 5.8 6.2 6.2 6.2 6.1 6.1 6.1 6.2 6.1 6.1 6.0 6.0 6.0 6.1 6.1 6.1 6.0 6.1 6.0 6.0 6.1 6.1 6.0 6.1 6.0 6.0 6.0 6.0 6.1 6.0 6.1 6.0 6.0 6.0 6.0 4.9 5.0 6.1 6.1 6.1 6.1 6.1 6.1 6.0 6.0 6.1 6.1 6.1 6.1 6.0 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1 6.1
TCMAPQ >= 20 3.8 6.1 6.2 6.1 6.5 6.0 6.5 6.5 6.6 6.3 6.3 6.2 6.6 6.3 6.4 6.4 6.1 6.2 6.5 6.4 6.3 6.3 6.3 6.3 6.3 6.2 6.4 6.4 6.3 6.2 6.1 6.2 6.0 6.2 6.1 6.2 6.3 6.2 6.3 6.3 4.2 4.3 6.6 6.4 6.4 6.4 6.4 6.4 6.1 6.2 6.5 6.2 6.5 6.4 6.2 5.8 6.4 6.4 6.5 6.3 6.4 6.2 6.2 6.3 6.3 6.2 6.2 6.3 6.2 6.2 6.1 6.1 6.3 6.3
TCMAPQ >= 10 3.8 6.2 6.5 6.5 6.7 6.0 6.7 6.8 6.8 6.4 6.7 6.6 7.0 6.5 6.8 6.7 6.6 6.7 6.8 6.5 6.7 6.3 6.3 6.4 6.6 6.5 6.7 6.6 6.7 6.4 6.1 6.4 6.3 6.9 6.5 6.7 6.5 6.5 6.5 6.5 5.3 5.5 7.0 6.8 6.8 6.6 6.8 6.9 6.6 6.6 6.8 6.9 7.0 6.7 6.5 6.7 6.7 6.8 7.0 6.5 6.6 6.3 6.3 6.5 6.5 6.6 6.5 6.4 6.2 6.2 6.0 6.1 6.1 6.1
TCMAPQ >= 3 3.6 6.4 6.7 6.6 6.7 5.9 6.7 6.3 6.4 6.2 6.5 6.5 6.7 6.3 6.4 6.4 6.3 6.5 6.7 6.6 6.6 6.2 6.0 6.2 6.4 6.4 6.8 6.8 6.4 6.2 5.9 6.1 6.1 6.7 6.6 6.9 6.4 6.4 6.5 6.3 5.4 5.4 7.3 7.1 7.0 6.8 6.8 6.7 6.6 6.7 6.8 6.9 6.9 6.8 6.4 6.7 6.7 6.9 6.9 6.6 6.3 6.1 5.9 6.1 6.1 6.2 6.1 5.8 5.6 5.6 5.4 5.6 5.6 5.8
TCMAPQ < 3 3.9 6.2 6.5 6.5 6.6 6.2 6.8 6.7 6.7 6.5 6.6 6.5 6.8 6.5 6.6 6.5 6.5 6.5 6.6 6.6 6.6 6.4 6.5 6.4 6.5 6.5 6.6 6.5 6.6 6.4 6.3 6.4 6.4 6.6 6.5 6.6 6.5 6.5 6.5 6.5 5.3 5.4 6.7 6.7 6.6 6.5 6.7 6.6 6.5 6.5 6.6 6.6 6.7 6.6 6.4 6.5 6.6 6.6 6.7 6.5 6.5 6.4 6.4 6.5 6.5 6.5 6.4 6.4 6.3 6.3 6.2 6.3 6.3 6.4
TCUnmapped 3.7 5.8 13.0 5.5 6.2 5.8 5.7 5.9 6.3 5.9 5.8 5.7 6.1 5.4 5.3 13.0 5.6 5.8 5.9 5.8 5.4 5.5 5.8 5.8 5.0 4.9 5.5 5.7 5.6 5.5 5.4 5.5 5.5 5.6 5.5 5.5 5.5 5.8 5.7 5.6 3.9 4.0 5.9 13.0 5.7 12.8 5.0 5.0 5.1 5.4 5.4 5.3 5.6 5.5 5.5 12.0 5.5 5.7 12.9 5.5 5.4 5.5 5.6 5.6 5.5 5.3 5.4 5.7 5.6 5.6 5.4 5.5 5.8 5.9
TGMAPQ >= 30 5.7 7.2 7.4 7.7 7.6 7.6 7.2 7.7 7.8 7.5 7.6 7.6 7.7 7.7 7.6 7.8 7.8 7.7 7.7 7.7 7.7 7.8 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.8 7.8 7.8 7.8 7.8 7.8 7.7 7.7 7.8 7.8 7.7 6.4 6.3 7.7 7.8 7.7 7.7 7.7 7.7 7.7 7.6 7.7 7.6 7.7 7.8 7.7 7.6 7.7 7.7 7.7 7.7 7.7 7.8 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.7 7.6 7.7 7.6
TGMAPQ >= 20 5.9 7.5 7.5 7.9 7.9 7.8 7.5 8.0 8.0 7.6 7.9 7.4 8.0 8.0 7.5 8.0 8.2 7.4 7.8 7.9 7.7 8.0 7.9 7.8 7.9 7.6 7.9 8.0 7.8 8.1 8.0 7.9 8.2 7.6 8.2 7.6 7.9 7.9 8.0 7.9 5.3 5.1 8.0 8.1 7.5 7.8 7.7 7.7 7.6 7.2 7.6 7.2 7.7 7.8 7.6 6.9 7.6 7.8 7.7 7.7 7.4 7.7 7.6 7.6 7.5 7.8 7.3 7.5 7.7 7.6 7.7 7.2 7.5 7.5
TGMAPQ >= 10 6.0 7.6 8.0 8.1 8.2 8.0 7.5 8.5 8.2 7.6 7.6 7.7 8.4 8.2 7.7 8.2 8.2 7.8 8.0 7.9 7.7 8.2 8.1 7.9 7.9 7.7 7.9 8.0 8.0 8.2 8.1 8.0 8.0 8.0 8.0 8.0 8.0 8.1 8.2 8.2 6.6 6.4 8.2 8.0 7.9 8.0 7.8 7.9 7.7 7.4 7.7 7.6 7.8 8.1 7.8 7.7 7.7 7.8 7.6 7.6 7.3 7.8 7.6 7.7 7.6 7.7 7.6 7.6 7.9 7.8 7.7 7.5 7.6 7.6
TGMAPQ >= 3 5.9 7.4 7.6 7.8 7.9 7.9 7.3 8.0 7.7 7.2 7.0 7.2 7.8 7.8 7.3 7.6 7.6 7.5 7.3 7.5 7.3 7.7 7.8 7.5 7.6 7.5 7.8 8.0 7.8 8.1 7.8 7.8 7.6 7.5 7.8 7.8 7.8 8.0 8.3 8.0 6.6 6.4 8.1 8.1 7.9 7.9 7.6 7.8 7.5 7.1 7.4 7.3 7.7 7.8 7.6 7.5 7.2 7.3 7.3 7.4 7.2 7.9 7.7 7.7 8.0 7.8 7.8 7.9 8.3 8.0 8.0 7.6 7.6 7.8
TGMAPQ < 3 5.9 7.4 7.6 7.9 7.8 7.8 7.4 8.0 7.9 7.5 7.6 7.6 7.9 7.8 7.6 7.8 7.9 7.7 7.8 7.8 7.7 7.9 7.9 7.8 7.8 7.7 7.8 7.8 7.8 7.9 7.9 7.8 7.9 7.9 7.8 7.8 7.8 7.9 7.9 7.9 6.5 6.3 7.9 7.9 7.7 7.8 7.7 7.8 7.7 7.5 7.7 7.6 7.7 7.9 7.7 7.7 7.6 7.7 7.7 7.7 7.5 7.7 7.7 7.7 7.8 7.8 7.7 7.7 7.8 7.8 7.8 7.6 7.7 7.6
TGUnmapped 5.0 6.4 5.9 6.1 6.7 6.5 6.7 6.2 6.8 6.5 6.6 6.3 6.6 7.2 5.8 6.4 6.7 6.5 6.6 6.6 6.5 6.3 6.7 6.7 7.1 13.0 6.5 6.6 6.6 6.6 6.4 6.5 6.7 6.4 6.5 6.3 13.4 6.5 6.5 6.4 5.3 4.4 6.4 6.5 6.3 6.2 5.6 5.7 5.7 6.1 13.3 6.1 6.3 6.4 6.1 6.0 6.2 6.4 6.4 6.4 13.3 6.3 6.2 6.3 13.3 6.2 6.0 6.2 6.1 6.1 6.0 5.9 6.2 6.2
TTMAPQ >= 30 6.1 8.8 9.1 8.8 8.5 8.6 8.8 8.9 8.8 8.7 8.7 8.7 8.7 8.5 8.4 8.3 8.2 8.2 8.2 8.1 8.2 8.1 8.1 8.1 8.1 8.1 8.0 8.0 8.0 8.0 8.0 8.0 7.9 7.9 7.9 8.0 8.0 8.0 7.9 7.9 6.5 6.5 8.0 8.0 8.0 8.0 7.9 7.9 7.8 7.8 7.9 7.9 7.9 7.9 7.8 7.8 7.9 7.9 7.9 7.9 7.9 7.9 7.9 7.9 7.9 7.9 7.9 7.9 7.9 7.9 7.9 7.9 8.0 8.0
TTMAPQ >= 20 6.0 8.6 8.8 8.5 8.3 8.3 8.4 8.4 8.3 8.2 8.0 8.1 8.3 8.0 7.9 7.9 7.5 7.4 7.8 7.6 7.7 7.6 7.5 7.5 7.2 7.3 7.4 7.4 7.4 7.3 7.3 7.3 7.1 7.1 7.1 7.1 7.3 7.4 7.3 7.2 4.7 4.9 7.5 7.2 7.2 7.3 7.2 7.0 6.8 7.0 7.2 7.3 7.5 7.4 6.7 6.7 7.6 7.5 7.5 7.5 7.6 7.6 7.6 7.7 7.7 7.4 7.4 7.7 7.5 7.5 7.0 7.0 7.4 7.5
TTMAPQ >= 10 6.0 8.5 8.8 8.5 8.2 8.1 8.2 7.9 7.7 7.6 7.6 7.9 7.9 7.6 7.5 7.1 7.1 7.1 7.1 6.7 6.9 6.7 6.7 6.6 6.5 6.4 6.5 6.6 6.5 6.4 6.4 6.4 6.5 6.5 6.5 6.5 6.4 6.4 6.3 6.1 5.0 5.2 6.4 6.2 6.2 6.0 6.1 6.0 5.9 6.0 6.2 6.2 6.2 6.2 5.9 6.1 6.1 6.1 6.1 6.0 6.2 6.1 6.2 6.3 6.4 6.2 6.2 6.2 6.2 6.2 6.2 6.2 6.3 6.5
TTMAPQ >= 3 6.2 8.7 9.2 9.1 9.0 8.8 8.7 8.4 8.4 8.1 8.2 8.4 8.5 8.1 8.1 7.8 7.7 7.6 7.7 7.3 7.3 7.1 7.1 7.0 7.0 7.2 7.1 7.0 7.0 6.6 6.6 6.5 6.7 6.8 6.9 6.7 6.7 6.7 6.6 6.6 5.3 5.6 7.0 6.7 6.4 6.1 6.2 6.1 5.8 5.8 6.1 6.2 6.1 6.2 6.2 6.3 6.4 6.5 6.6 6.5 6.6 6.5 6.7 6.8 6.9 6.7 6.8 6.6 6.4 6.3 6.3 6.3 6.4 6.7
TTMAPQ < 3 6.1 8.8 9.0 8.7 8.5 8.5 8.7 8.7 8.6 8.4 8.4 8.5 8.4 8.2 8.1 8.0 7.9 7.9 7.9 7.8 7.9 7.7 7.7 7.6 7.5 7.6 7.6 7.6 7.6 7.5 7.4 7.5 7.5 7.5 7.5 7.5 7.5 7.5 7.4 7.4 6.0 6.1 7.5 7.4 7.4 7.4 7.4 7.3 7.2 7.2 7.4 7.4 7.4 7.3 7.2 7.3 7.4 7.4 7.3 7.3 7.4 7.5 7.5 7.5 7.4 7.3 7.5 7.4 7.4 7.4 7.4 7.4 7.5 7.5
TTUnmapped 5.6 8.6 8.1 8.0 8.7 9.0 9.0 9.3 9.9 9.8 9.8 10.2 10.5 9.7 16.9 10.7 10.8 10.8 10.9 10.8 10.8 11.0 11.2 11.0 9.9 9.8 10.8 10.6 10.4 10.2 10.2 10.3 10.0 9.9 9.9 10.0 10.3 10.2 10.0 9.9 7.3 7.5 10.4 10.2 10.1 10.1 9.5 8.9 8.9 9.5 9.7 9.8 9.8 9.5 8.8 8.8 9.3 16.4 8.9 8.6 8.7 8.8 8.8 15.8 8.4 8.2 8.4 8.4 8.2 8.1 7.7 7.9 8.4 8.3
Percentage of 2-mers at each position of the read for each alignment quality interval. Numbers shown in bold corresponds to p-values of <= 1e-100.

Error Distribution

MAPQ >= 30 MAPQ >= 20 MAPQ >= 10 MAPQ >= 3 MAPQ < 3

Nucleotide Composition MAPQ >= 30

A C G T N

Nucleotide Composition MAPQ >= 20

A C G T N

Nucleotide Composition MAPQ >= 10

A C G T N

Nucleotide Composition MAPQ >= 3

A C G T N

Nucleotide Composition MAPQ < 3

A C G T N

Nucleotide Composition Unmapped

A C G T N

Length Distribution MAPQ >= 30

Length Distribution MAPQ >= 20

Length Distribution MAPQ >= 10

Length Distribution MAPQ >= 3

Length Distribution MAPQ < 3

Length Distribution Unmapped

Top 5 over-represented 2-mers MAPQ >= 30

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
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CT

AA

TT

CA

TG

AG

AA

TT

CA

TG

AG

AA

TT

CA

TG

CT

AA

TT

CA

TG

CT

TT

AA

TG

CA

CT

TT

AA

CA

TG

CT

TT

AA

CA

TG

CT

TT

AA

CA

TG

CT

AA

TT

TG

CA

CT

TT

AA

CA

TG

CT

TT

AA

CA

TG

CT

TT

AA

TG

CA

CT

TT

AA

CA

TG

CT

TT

AA

CA

TG

CT

TT

AA

CA

TG

CT

TT

AA

TG

CA

CT

TT

AA

CA

TG

CT

TT

AA

CA

TG

AG

TT

AA

CA

TG

AG

TT

AA

CA

TG

AG

TT

AA

CA

TG

AG

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ >= 20

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

AG

AA

CA

CT

AT

TT

AA

AG

TG

CT

TT

AA

TG

CA

CT

TT

AA

TG

AG

CA

TT

AA

TG

AG

CA

TT

AA

TG

CA

AG

TT

AA

TG

CA

CT

TT

TG

AA

CA

CT

TT

TG

CA

AA

AG

TT

AA

CA

TG

AG

TT

AA

TG

CA

AG

TT

AA

CA

TG

CT

TT

TG

CA

AA

CT

TG

TT

CA

AA

AG

TT

AA

CA

CT

TG

TG

TT

CA

CT

AA

TG

CA

AG

TT

AA

TG

AG

CA

TT

AA

TG

TT

CA

CT

AG

CA

TG

TT

CT

AG

TG

CT

TT

CA

AG

TG

CA

TT

CT

AA

TG

CA

AG

TT

CT

CA

TG

AG

CT

TT

TG

CA

AG

AA

CT

AG

TG

AA

CA

CT

TG

CA

CT

AG

TT

TG

CA

AG

CT

TT

TG

CA

AG

TT

CT

TG

CA

AG

CT

AA

TG

CA

AG

CT

AA

TG

CA

AG

TT

CT

TG

AG

CA

AA

GG

TG

AA

GG

AG

CA

TG

CA

AG

GG

AA

CA

TG

AG

GG

AA

TG

CA

AG

CT

AA

TG

CA

CT

AG

TT

TG

CA

CT

AG

AA

TG

CA

AG

CT

AA

AA

CA

GA

TA

TG

AA

AG

AT

AC

TG

TG

CA

CT

TT

AG

TG

CA

AG

CT

GG

CA

TG

GG

CT

AG

CA

TG

CT

AG

AA

CA

TG

CT

AA

AG

CA

TG

AA

AG

GG

AG

AA

GG

TG

CA

AA

GG

AG

CA

CT

CA

AA

TG

AG

GG

AA

CA

CT

TT

GG

CA

TG

CT

AA

TT

CA

TG

AA

AG

TT

AA

CA

TG

AG

GG

AA

CA

CT

AG

GG

AA

TG

CA

CT

TT

TG

CA

CT

AA

TT

CA

AA

TG

TT

CT

AA

CA

TG

CT

TT

AA

CA

CT

TT

TG

AA

CA

TG

TT

CT

AA

CA

TT

TG

CT

AA

TT

CA

TG

CT

AA

TT

CA

CT

TG

TG

AA

CA

AG

TT

AA

CA

TT

AG

CT

AA

CA

TT

TG

AG

AA

CA

TG

TT

CT

AA

CA

TG

TT

AG

CA

AG

AA

TG

GG

AA

AG

CA

GG

TG

AA

CA

TG

AG

TT

AA

CA

AG

TT

TG

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ >= 10

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

AG

GG

AA

CA

CT

TT

GG

TG

AG

AA

TT

TG

GG

CT

CA

TT

TG

CA

AG

CT

TG

TT

AG

GG

CA

TT

GG

TG

CA

CT

TT

TG

CT

GG

CA

TG

TT

CA

CT

AG

TG

TT

CA

GG

AG

GG

CA

TG

TT

AG

CA

TT

TG

GG

AG

CT

TT

TG

CA

AG

TG

TT

CA

CT

AG

TG

CA

TT

CT

AG

CT

TG

CA

TT

GG

TG

CT

CA

TT

GG

TG

CA

CT

CC

AG

TG

CT

CA

AG

GG

TG

CA

GG

CT

AG

CA

TG

GG

AG

CT

TG

CT

GG

CA

AG

TG

CA

CT

CC

GG

TG

AG

CA

CT

GG

CA

GG

TG

AG

CT

TG

GG

AG

CA

CC

GG

CA

TG

AG

CC

TG

CA

GG

CT

CC

TG

CA

GG

AG

CT

CA

TG

GG

AG

CC

TG

GG

CA

AG

CC

GG

TG

CA

CT

AG

CA

TG

GG

AG

CT

TG

CA

CT

GG

AG

GG

TG

CA

CC

AG

CA

TG

GG

CT

CC

CA

TG

GG

AG

CT

TG

CA

GG

CC

CT

CA

TG

GG

CT

CC

TG

CA

GG

CT

AG

TG

GG

CA

AG

CT

CA

GA

AA

TG

GG

AG

AA

AT

AC

TG

TG

CA

CT

CC

GG

TG

CT

CA

CC

GG

TG

CA

GG

CC

CT

TG

CC

CA

CT

AG

CT

TG

CA

CC

GG

CA

TG

CT

GG

CC

CA

AG

TG

GG

CC

CT

CC

GG

AG

CA

CA

CT

TG

GG

CC

CT

TG

CA

GG

CC

CT

CA

TG

CC

AG

CA

TG

GG

CC

CT

TG

CA

AG

CT

GG

CA

TG

CT

AG

CC

CT

CA

TG

CC

AG

CT

TG

CA

AG

CC

CA

CT

CC

TG

AG

CA

CC

CT

TG

AA

CT

CA

CC

AG

AA

CA

TG

CT

CC

AA

CT

CC

CA

AA

TG

CC

CA

CT

TG

AA

CT

CC

CA

TG

AA

CC

CA

CT

TG

AG

CC

CA

CT

TG

AA

CC

CA

AA

AG

CT

CC

TG

CA

AG

CT

CC

CA

TG

AA

GG

CA

AA

CC

TG

AG

CC

CA

AG

AA

TG

CC

AA

CA

TG

AG

CC

AA

CA

TG

AG

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ >= 3

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

AG

GG

AA

CA

AT

TT

GG

AA

TG

AG

TT

CA

TG

CT

AA

TT

TG

CA

CT

AA

TT

TG

CA

AA

AG

TT

TG

CA

GG

CT

TT

TG

AA

CA

AG

TT

CA

TG

AA

CT

TT

CA

TG

AA

AG

TT

CA

AA

AG

GG

TT

CA

AG

AA

TG

TT

CA

CT

TG

AG

TT

TG

CA

AG

CT

TT

TG

CA

AG

CT

TT

AG

CA

CT

TG

TT

TG

CA

CT

AG

TT

AG

TG

CA

CT

AG

GG

TT

TG

CT

GG

TT

AG

CT

TG

GG

AG

TG

CA

TT

GG

AG

CT

CA

TG

CA

TG

GG

AG

CT

AG

TG

GG

CA

CT

GG

AG

CA

TG

TT

GG

TG

AG

CA

CT

GG

TG

CA

AG

CT

GG

TG

CA

CT

AG

GG

TG

CA

AG

CC

GG

CA

TG

AG

CC

GG

TG

CA

AG

CC

GG

CA

TG

AG

CT

GG

CA

TG

AG

GA

GG

CA

AG

TG

CC

GG

CA

TG

AG

CC

CA

TG

CC

GG

CT

CA

TG

CC

AG

GG

CA

TG

GG

CC

CT

TG

CA

CT

GG

CC

TG

CA

GG

CT

CC

TG

GG

CA

CT

CC

CA

AA

GA

TG

GG

AG

AT

AA

AC

TG

TG

CC

CT

CA

TC

CC

TG

CT

CA

TC

CC

TG

CA

CT

GG

CC

TG

CA

CT

GG

CC

CT

TG

CA

GG

CC

TG

CA

GG

CT

CC

CA

TG

GG

AG

CC

CT

CA

AG

AA

CC

CT

CA

TG

GG

CC

CT

AA

CA

GG

CT

CC

TG

CA

AA

TG

CA

CC

GG

CT

TG

AA

CT

GG

AG

AG

AA

TG

GG

CT

CT

AA

CC

CA

GG

CT

AG

AA

CC

TG

CT

CC

TG

GG

CA

CT

AA

CA

CC

TG

CT

CA

AA

AG

TG

TG

AA

CT

CA

AG

AA

TG

CT

CA

AG

AA

TG

CT

AG

CA

TG

AA

CT

CA

CC

TG

CT

AA

CA

AG

TG

AA

CT

CA

CC

AA

TG

CT

CA

CC

TG

AA

CA

AG

CT

AA

TG

CA

AG

GG

AA

TG

AG

CA

CC

AA

AG

TG

CA

CC

AA

CC

TG

CA

AG

CC

AA

TG

CA

AG

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ < 3

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

AA

AG

CA

AT

GG

TT

AA

AG

TG

AT

TT

AA

TG

CA

AT

TT

AA

TG

CA

AG

TT

AA

TG

CA

AG

TT

AA

TG

CA

CT

TT

AA

TG

CA

CT

TT

TG

AA

CA

CT

TT

TG

AA

CA

AG

TT

AA

CA

TG

AG

TT

AA

CA

TG

AG

TT

AA

CA

TG

CT

TT

AA

TG

CA

CT

TT

TG

AA

CA

CT

TT

CA

AA

TG

CT

TT

TG

AA

CA

CT

TT

TG

CA

AA

AG

TT

TG

CA

AA

CT

TT

TG

CA

AA

CT

TG

TT

CA

AA

CT

TT

TG

CA

AA

CT

TG

CA

TT

AA

CT

TG

CA

TT

AA

AG

CA

TG

TT

AA

AG

TG

CA

AA

TT

AG

TG

CA

TT

AA

AG

TG

CA

TT

AA

CT

CA

TG

TT

AA

AG

CA

TG

TT

AA

AG

CA

TG

TT

AA

AG

CA

TG

AA

TT

AG

CA

TG

TT

AA

AG

TG

CA

TT

AA

AG

TG

CA

TT

AA

AG

CA

TG

TT

AA

CT

CA

TG

AA

TT

AG

CA

TG

AA

TT

AG

TG

CA

AA

TT

CT

TG

CA

AA

TT

CT

TG

CA

AA

TT

AG

AA

CA

GA

TG

TT

AA

AG

AT

TG

CA

TG

CA

TT

AA

CT

TG

CA

AA

TT

CT

CA

TG

AA

TT

CT

TG

CA

AA

TT

CT

TG

CA

AA

TT

CT

CA

TG

AA

TT

AG

CA

AA

TG

AG

TT

AA

CA

TG

CT

AG

CA

AA

TG

TT

CT

AA

CA

TG

CT

TT

CA

TG

AA

CT

TT

CA

TG

AA

TT

AG

AA

CA

TG

AG

CT

AA

CA

TG

TT

CT

AA

CA

TG

TT

CT

AA

CA

TG

CT

TT

AA

CA

TG

CT

TT

AA

CA

TG

CT

TT

AA

CA

TG

CT

TT

AA

CA

TG

TT

CT

AA

CA

TG

TT

CT

AA

CA

TG

TT

CT

AA

TG

CA

TT

CT

AA

TG

CA

TT

CT

AA

CA

TG

TT

CT

AA

CA

TG

TT

CT

AA

TG

CA

TT

CT

AA

TG

CA

TT

AG

AA

TG

CA

AG

TT

AA

CA

TG

AG

TT

AA

CA

TG

TT

AG

AA

CA

TG

TT

AG

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers Unmapped

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

GA

AA

AT

AG

CA

AT

AA

TT

GA

TG

TC

TT

AA

AT

TG

CG

TT

AA

AT

TG

GG

TT

AA

AT

CA

GA

TT

AA

AT

CA

AA

TT

TG

AT

CA

AG

TT

AA

AT

TG

GA

TT

AA

TG

CA

AG

TT

AA

CA

TG

GC

TT

AA

AT

CA

TT

CG

AA

AT

CA

GG

TT

AA

TG

AT

GT

TT

AA

TG

CA

TT

AA

AT

GA

AG

TC

TT

AA

CA

AT

CA

TT

AA

TG

AT

AG

TT

AA

AT

TG

GC

TT

AA

TG

CA

CA

TT

AA

TG

AT

AG

TT

AA

CA

TG

GG

TT

AA

AT

TG

GA

TT

AA

TG

CA

AA

TT

TG

CA

AT

AT

TT

AA

TG

CA

TG

TT

AA

AT

GA

GC

TT

AA

TG

CA

CC

TT

AA

TG

CA

TT

CG

AA

TG

CA

GA

TT

AA

TG

CA

AG

TT

AA

CA

GG

GA

TT

AA

TG

CA

AC

TT

AA

TG

GG

CC

TT

AA

GG

TG

TT

CG

AA

GG

TG

GT

TT

AA

GG

CA

TG

TT

AA

GG

CA

GG

TT

AA

TG

CA

GC

TT

AA

GG

TG

TT

CG

AA

GG

TG

GC

TT

AA

GG

TG

CA

TT

AA

GG

AT

AT

TT

AA

GG

TG

TC

TT

AA

GG

TG

CT

TT

AA

GG

CA

TC

TT

AA

GG

CA

CG

TT

AA

GG

TG

GT

TT

AA

GG

TG

TA

AA

TT

GG

GA

AT

TT

AA

GG

CC

TG

TT

AA

GG

CC

GC

TT

AA

GG

CC

CC

TT

AA

GG

TG

CG

TT

AA

GG

CC

GT

AA

TT

GG

CA

TC

AA

TT

GG

AT

CT

TT

AA

GG

TG

TT

AA

GG

TG

CA

TC

TT

AA

GG

TG

CT

TT

AA

GG

TG

TG

AA

TT

GG

CA

GC

TT

AA

GG

TG

CT

TT

AA

GG

TG

TT

GG

AA

TG

CC

TG

AA

GG

TT

CA

GA

GG

AA

TT

CA

AA

GG

TT

GA

CA

AA

GG

TT

TG

AG

AA

GG

TT

CA

CC

AA

GG

TT

CA

GA

AA

GG

TT

GA

CA

AA

GG

TT

AG

AT

AA

GG

TT

AG

AT

AA

GG

TT

AG

GA

 
Top 5 enriched 2-mers at each positon withion reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 20 over-represented 10-mers

MAPQ >= 30 MAPQ >= 20 MAPQ >= 10 MAPQ >= 3 MAPQ < 3 Unmapped
SeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-value
CCTGTAATCC 812227 0.0e+00 TTTTTTTTTT 132692 0.0e+00 GGAGGCTGAG 56015 0.0e+00 CTCCTGACCT 13431 0.0e+00 GGAGGCTGAG 97784 0.0e+00 TTTTTTTTTT 2005057 0.0e+00
CTGTAATCCC 796580 0.0e+00 AAAAAAAAAA 131494 0.0e+00 GAGGCTGAGG 55576 0.0e+00 GGAGGCTGAG 11840 0.0e+00 GAGGCTGAGG 97500 0.0e+00 AAAAAAAAAA 1192068 0.0e+00
GCCTGTAATC 601558 0.0e+00 GGAGGCTGAG 62090 0.0e+00 AGGCTGAGGC 52482 0.0e+00 GAGGCTGAGG 11831 0.0e+00 AGGCTGAGGC 90504 0.0e+00 ATTCCATTCC 319511 0.0e+00
CAGGCTGGAG 552609 0.0e+00 GAGGCTGAGG 61429 0.0e+00 GGCTGAGGCA 49290 0.0e+00 TCCTGACCTC 11829 0.0e+00 CTCCTGACCT 89587 0.0e+00 TTCCATTCCA 317216 0.0e+00
CTTTGGGAGG 541865 0.0e+00 TAATCCCAGC 57873 0.0e+00 GCTGAGGCAG 48515 0.0e+00 AGGCTGAGGC 11266 0.0e+00 CTCAGCCTCC 84448 0.0e+00 CCATTCCATT 311381 0.0e+00
AATCCCAGCA 533185 0.0e+00 TGTAATCCCA 56297 0.0e+00 CTCAGCCTCC 48371 0.0e+00 GGCTGAGGCA 10469 0.0e+00 CCTCAGCCTC 84362 0.0e+00 TCCATTCCAT 309831 0.0e+00
GGCTGGAGTG 511426 0.0e+00 AGGCTGAGGC 55499 0.0e+00 CCTCAGCCTC 48076 0.0e+00 GCTGAGGCAG 10424 0.0e+00 GGCTGAGGCA 84181 0.0e+00 CATTCCATTC 303325 0.0e+00
GCTGGAGTGC 503514 0.0e+00 GTAATCCCAG 54951 0.0e+00 TAATCCCAGC 47612 0.0e+00 CTGAGGCAGG 10396 0.0e+00 GCTGAGGCAG 83003 0.0e+00 GGAATGGAAT 297167 0.0e+00
CAGCACTTTG 499864 0.0e+00 CTGTAATCCC 54427 0.0e+00 CTGAGGCAGG 47327 0.0e+00 CCTCAGCCTC 10165 0.0e+00 CTGAGGCAGG 81419 0.0e+00 TGGAATGGAA 296046 0.0e+00
TCCCAGCACT 497034 0.0e+00 CCTGTAATCC 53931 0.0e+00 CTCCTGACCT 47010 0.0e+00 CTCAGCCTCC 10163 0.0e+00 TAATCCCAGC 80726 0.0e+00 AATGGAATGG 292581 0.0e+00
CCCAGCACTT 480436 0.0e+00 CTCAGCCTCC 51643 0.0e+00 TCCCAGCTAC 46065 0.0e+00 AGGTCAGGAG 9939 0.0e+00 TCCCAGCTAC 80629 0.0e+00 ATGGAATGGA 291796 0.0e+00
GAGTGCAGTG 445884 0.0e+00 CCTCAGCCTC 51124 0.0e+00 CCCAGCTACT 45772 0.0e+00 TCCCAGCTAC 9899 0.0e+00 CCCAGCTACT 79677 0.0e+00 GATCGGAAGA 290963 0.0e+00
TGGAGTGCAG 437196 0.0e+00 GGCTGAGGCA 50590 0.0e+00 GTAATCCCAG 45356 0.0e+00 CCCAGCTACT 9881 0.0e+00 TCCTGACCTC 79569 0.0e+00 ATCGGAAGAG 285532 0.0e+00
TGCTGGGATT 385490 0.0e+00 TCCCAGCTAC 49550 0.0e+00 TGTAATCCCA 45298 0.0e+00 AGGCAGGAGA 9767 0.0e+00 GCCTCAGCCT 77871 0.0e+00 GAATGGAATG 283266 0.0e+00
CCAGCCTGGG 383617 0.0e+00 CCCAGCTACT 48909 0.0e+00 GCCTCAGCCT 44706 0.0e+00 TGAGGCAGGA 9747 0.0e+00 TGTAATCCCA 77321 0.0e+00 TCGGAAGAGC 278897 0.0e+00
AGTGCTGGGA 373395 0.0e+00 GCTGAGGCAG 48728 0.0e+00 TGAGGCAGGA 43863 0.0e+00 TTTTAGTAGA 9718 0.0e+00 GTAATCCCAG 76937 0.0e+00 CGGAAGAGCG 275640 0.0e+00
GTGCTGGGAT 369341 0.0e+00 CTGAGGCAGG 46758 0.0e+00 CTGTAATCCC 43666 0.0e+00 GAGGCAGGAG 9658 0.0e+00 TGAGGCAGGA 75691 0.0e+00 GGAAGAGCGG 272349 0.0e+00
TGCCCAGGCT 354892 0.0e+00 GCTCACTGCA 46637 0.0e+00 AGGCAGGAGA 43453 0.0e+00 GCCTCAGCCT 9640 0.0e+00 AGGCAGGAGA 75553 0.0e+00 GAAGAGCGGT 266093 0.0e+00
TGTTGCCCAG 342144 0.0e+00 GGGAGGCTGA 46044 0.0e+00 GAGGCAGGAG 43205 0.0e+00 TTTAGTAGAG 9636 0.0e+00 GAGGCAGGAG 74939 0.0e+00 AAGAGCGGTT 262587 0.0e+00
TGCCTGTAAT 335263 0.0e+00 GCCTCAGCCT 45698 0.0e+00 GGCAGGAGAA 43035 0.0e+00 GGCAGGAGAA 9612 0.0e+00 GGGAGGCTGA 74932 0.0e+00 AGAGCGGTTC 259466 0.0e+00