ezh2_y641n_input

Mapping stats: 89% aligned (31.3M aligned out of 35.0M total) 

Number of alignments in various mapping quality (MAPQ) intervals and number of unmapped sequences. The percentage and number of alignments in each category is given in brackets.

Mean Base Quality

Mean base quality of reads with low and high mapping quality.

Error Profile MAPQ >= 30

Mismatches Insertions Deletions

Error Profile MAPQ >= 20

Mismatches Insertions Deletions

Error Profile MAPQ >= 10

Mismatches Insertions Deletions

Error Profile MAPQ >= 3

Mismatches Insertions Deletions

Error Profile MAPQ < 3

Mismatches Insertions Deletions

Nucleotide Over-representation along read

Mer Q 1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
AAMAPQ >= 30 20.3 11.0 12.5 10.9 14.6 14.2 14.2 12.4 11.6 12.1 12.0 12.0 11.8 11.6 11.6 11.6 11.6 11.5 11.5 11.4 11.4 11.4 11.4 11.4 11.5 11.4 11.4 11.4 11.3 11.3 11.3 11.3 11.3 11.3 11.3 11.3 11.3 11.3 11.3 11.3 11.3 11.2 11.2 11.2 11.2 11.3 11.3 11.3 11.3 11.3 11.3 11.9 11.9 11.3 11.3 11.3 11.2 11.2 11.3 11.3 11.3 11.3 11.3 11.3 11.3 11.3 11.4 11.4 11.4 11.4 11.4 11.4 11.2 11.2
AAMAPQ >= 20 21.1 11.5 12.2 10.4 14.5 14.4 14.1 12.3 11.1 12.3 12.5 12.0 11.9 11.5 11.8 12.0 11.4 11.4 11.1 11.2 11.4 11.1 11.6 11.4 11.6 11.6 11.3 11.3 11.0 11.2 11.4 10.9 11.1 11.3 11.1 11.4 11.2 11.3 11.3 11.2 11.1 11.1 11.0 11.1 10.9 11.3 11.2 11.1 11.4 11.3 11.1 11.9 11.7 11.4 11.5 11.4 11.3 11.1 11.2 11.4 11.4 11.7 11.7 11.6 12.1 12.0 12.1 11.8 11.8 11.6 10.9 10.6 10.2 9.9
AAMAPQ >= 10 17.8 10.3 10.4 8.1 11.6 12.0 11.5 9.5 8.4 10.1 10.4 9.5 9.3 8.7 9.3 10.1 8.9 8.9 8.7 8.7 9.2 8.9 9.6 9.2 9.8 9.8 9.2 9.4 8.8 9.0 9.2 9.0 9.4 9.4 8.8 9.3 9.5 9.5 9.9 9.7 9.4 9.3 8.9 9.3 8.9 9.6 9.1 9.0 9.4 9.6 9.3 10.0 9.5 9.3 9.2 9.2 9.4 9.1 9.1 9.5 9.7 10.1 9.7 9.5 9.5 9.5 10.0 9.5 9.5 9.8 9.4 10.0 9.8 9.3
AAMAPQ >= 3 16.9 9.4 9.7 8.6 10.9 10.9 11.4 9.3 9.4 10.1 10.1 9.9 9.2 8.9 8.8 10.0 9.3 8.5 8.6 9.4 8.9 9.6 9.0 8.6 9.2 8.4 8.7 8.8 8.3 9.0 8.9 9.5 9.7 9.8 9.3 9.5 10.0 9.5 9.7 9.5 8.8 9.4 8.8 9.3 8.9 9.7 9.3 9.7 8.7 9.4 9.4 9.8 9.9 9.0 8.8 9.3 9.3 9.0 8.8 9.5 9.4 9.9 9.5 9.2 8.9 9.0 9.5 9.1 8.9 9.6 9.2 9.5 9.2 9.0
AAMAPQ < 3 18.9 10.9 11.1 9.1 12.7 12.8 12.5 10.4 9.3 11.0 11.4 10.7 10.5 10.1 10.8 11.2 10.2 10.2 9.7 10.0 10.2 10.0 10.5 10.3 10.5 10.7 10.2 10.6 10.0 10.1 10.5 10.0 10.3 10.4 9.9 10.6 10.5 10.6 10.6 10.5 10.3 10.2 9.9 10.2 9.9 10.4 9.9 9.9 10.2 10.2 10.2 10.2 9.9 10.4 10.3 10.3 10.3 10.1 10.1 10.3 10.4 10.7 10.4 10.3 10.5 10.3 10.8 10.6 10.5 10.6 10.1 10.2 10.1 9.7
AAUnmapped 22.4 12.6 13.5 11.6 16.5 16.3 15.8 13.4 12.2 13.7 14.2 13.9 13.6 13.3 13.9 14.1 13.2 12.7 12.3 12.8 13.4 12.9 13.1 12.8 13.5 13.5 12.7 12.4 12.0 12.7 12.9 12.3 12.2 12.0 12.7 13.1 12.6 12.6 12.1 12.9 12.9 12.8 12.3 11.9 12.4 12.6 12.3 11.9 11.6 11.8 12.0 9.6 9.4 11.4 12.0 12.2 11.7 11.4 11.0 11.6 11.8 11.5 11.3 10.7 11.4 11.2 10.9 10.5 9.9 10.1 9.9 9.4 9.0 8.6
ACMAPQ >= 30 6.1 3.0 4.9 5.5 6.6 5.3 5.5 4.8 4.7 4.8 4.7 4.7 4.8 4.8 4.9 4.9 5.0 4.9 5.0 5.0 5.1 5.0 5.1 5.0 5.1 5.1 5.1 5.1 5.1 5.1 5.2 5.2 5.1 5.1 5.1 5.2 5.1 5.1 5.2 5.2 5.2 5.2 5.2 5.1 5.2 5.2 5.2 5.2 5.3 5.2 5.2 4.5 5.8 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.2 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.2 5.0
ACMAPQ >= 20 6.6 3.1 4.9 5.0 6.2 5.1 5.5 4.7 4.7 4.6 4.6 4.6 4.7 4.8 4.8 4.7 5.1 4.9 4.8 5.0 4.9 4.9 4.8 4.8 4.8 4.8 4.9 4.8 4.9 5.0 5.0 5.2 4.9 5.0 4.9 5.0 5.0 5.0 5.2 5.1 5.3 5.1 5.3 4.9 5.4 4.9 5.1 5.0 5.1 5.2 5.0 4.3 5.9 5.0 5.1 5.1 5.1 5.0 5.2 5.1 5.0 5.0 5.0 5.0 4.9 4.9 4.8 4.9 4.8 4.9 4.8 4.9 4.9 4.8
ACMAPQ >= 10 5.6 2.9 4.7 4.9 6.5 4.8 5.7 4.3 4.5 4.2 4.5 4.6 4.6 4.7 4.9 4.8 5.5 5.0 4.6 5.2 4.9 4.7 4.8 4.8 4.8 4.8 5.0 4.6 4.6 5.0 4.8 4.8 4.8 4.5 4.5 4.8 4.7 4.7 5.0 5.1 5.4 4.7 5.1 4.5 5.1 4.7 5.1 4.6 5.0 5.3 4.8 4.3 5.5 4.7 5.0 4.9 5.0 5.0 5.2 5.1 5.3 5.0 5.2 5.2 5.0 5.2 4.5 5.1 4.8 4.8 4.6 4.9 5.0 4.9
ACMAPQ >= 3 6.1 3.1 4.9 5.1 7.0 5.3 6.2 4.9 5.3 4.7 5.0 4.8 5.2 5.0 5.5 4.7 6.2 5.5 5.0 5.8 5.4 5.4 5.5 5.4 5.7 5.4 5.4 5.1 5.1 5.7 5.2 5.6 5.1 5.2 5.0 5.2 5.1 5.4 5.3 5.4 6.1 5.4 5.8 5.2 5.4 5.6 5.7 5.2 5.9 5.5 5.5 4.6 5.7 5.4 5.1 5.3 5.5 5.5 5.4 5.2 5.7 5.3 5.4 5.6 5.5 5.4 4.9 5.1 4.9 5.0 5.3 5.3 5.5 5.3
ACMAPQ < 3 5.6 2.9 4.8 4.9 6.4 4.9 5.5 4.6 4.6 4.4 4.5 4.5 4.6 4.7 4.8 4.7 5.2 5.0 4.8 5.1 4.9 4.7 4.9 4.8 4.9 4.8 4.9 4.8 4.9 5.0 4.9 5.0 4.7 4.7 4.7 4.8 4.7 4.9 5.2 5.1 5.2 4.9 5.2 4.8 5.3 4.9 5.0 4.8 5.1 5.0 4.8 4.3 5.3 4.9 5.1 5.0 5.0 5.1 5.2 5.2 5.1 5.0 5.0 5.1 5.0 5.0 4.7 5.0 4.8 5.0 4.7 4.9 5.0 4.7
ACUnmapped 6.4 2.9 4.9 4.9 6.0 5.0 5.2 4.8 4.5 4.7 4.7 4.6 4.6 4.6 4.7 4.8 5.1 4.8 4.9 4.8 4.9 4.8 4.6 4.6 4.7 4.9 4.8 4.7 4.8 4.9 5.2 4.9 4.8 4.8 4.6 5.1 4.7 5.0 4.8 4.8 5.1 4.6 5.0 4.4 4.9 4.7 4.8 4.6 4.6 4.7 4.7 3.9 4.1 4.8 4.7 4.9 4.7 4.8 4.9 4.7 4.9 4.6 4.7 4.6 4.4 4.7 4.4 4.5 4.2 4.3 4.3 4.1 4.2 4.0
AGMAPQ >= 30 13.6 6.3 6.5 7.6 7.9 7.1 5.4 5.8 5.6 6.1 6.2 6.3 6.5 6.6 6.7 6.7 6.9 6.9 7.0 7.0 7.1 7.1 7.2 7.1 7.2 7.2 7.2 7.2 7.2 7.2 7.2 7.2 7.2 7.2 7.2 7.2 7.3 7.2 7.2 7.3 7.2 7.2 7.2 7.2 7.2 7.3 7.2 7.2 7.3 7.2 7.2 6.3 7.6 7.2 7.3 7.2 7.3 7.2 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.2 7.2 7.3 7.2
AGMAPQ >= 20 12.9 6.0 6.3 7.1 7.4 6.5 5.2 5.4 5.4 5.7 6.0 5.9 6.1 6.2 6.1 6.4 6.3 6.5 6.3 6.7 6.5 6.6 6.9 6.8 6.8 7.1 6.9 7.2 6.8 6.9 6.7 6.8 6.6 6.7 6.6 6.9 6.8 6.7 6.6 6.8 6.6 6.5 6.5 6.7 6.7 6.7 6.9 6.7 6.9 6.8 6.8 5.8 7.4 6.7 6.9 6.7 7.0 6.8 6.7 7.0 6.7 6.8 6.8 6.7 6.6 6.5 6.3 6.4 6.4 6.5 6.6 6.7 6.6 6.7
AGMAPQ >= 10 13.8 5.7 6.1 7.5 7.3 6.4 5.1 5.1 5.3 5.8 5.9 5.8 6.0 6.5 6.1 6.1 6.1 6.5 5.9 6.4 6.3 6.3 6.8 6.3 6.6 7.2 6.5 6.9 6.7 6.6 6.1 6.4 6.2 6.3 6.2 6.7 6.7 6.1 6.0 6.8 6.2 6.2 5.9 6.6 6.4 6.3 6.4 6.4 6.8 6.3 6.3 5.4 7.1 6.4 6.6 6.0 6.6 6.5 6.1 6.7 6.2 6.3 6.5 6.2 6.4 6.4 6.2 6.7 6.7 6.7 6.5 6.9 6.4 6.7
AGMAPQ >= 3 14.2 6.0 6.5 7.6 7.8 6.3 5.8 5.5 6.0 6.4 6.6 6.4 7.1 7.0 6.9 6.8 6.9 7.5 6.2 6.8 6.7 6.4 7.4 6.9 6.9 7.2 7.2 7.1 7.1 7.1 6.5 6.9 6.7 6.7 6.8 6.4 7.1 6.6 6.3 6.8 6.1 6.3 6.3 6.7 6.9 6.6 6.4 6.5 7.0 6.7 6.8 6.2 7.6 7.5 6.7 6.5 6.8 7.1 6.5 6.9 6.8 6.2 7.0 6.8 6.6 6.7 6.5 6.9 6.7 7.2 6.7 6.9 7.0 6.5
AGMAPQ < 3 13.1 5.8 6.2 7.1 7.2 6.3 5.0 5.1 5.3 5.5 5.9 6.0 6.3 6.3 6.1 6.4 6.4 6.4 6.1 6.3 6.1 6.4 6.6 6.5 6.5 6.9 6.9 6.9 6.7 6.5 6.2 6.5 6.2 6.5 6.4 6.4 6.5 6.4 6.2 6.6 6.4 6.4 6.1 6.4 6.3 6.3 6.4 6.3 6.7 6.3 6.5 5.5 6.7 6.3 6.5 6.3 6.5 6.4 6.3 6.7 6.2 6.5 6.5 6.5 6.4 6.5 6.3 6.7 6.6 6.8 6.8 6.7 6.6 6.5
AGUnmapped 11.5 5.5 6.0 6.3 6.8 6.0 4.8 5.4 5.0 5.3 5.5 5.5 5.7 5.6 5.7 5.9 5.8 5.9 5.9 6.1 6.2 6.2 6.2 6.3 6.4 6.6 6.6 6.7 6.6 6.4 6.7 6.4 6.6 6.5 6.5 6.6 6.6 6.7 6.5 6.7 6.7 6.6 6.6 6.6 6.7 6.6 6.9 6.7 6.9 6.9 6.9 5.7 5.6 6.6 6.8 6.7 6.8 6.6 6.6 6.7 6.6 6.7 6.7 6.7 6.6 6.9 6.7 7.0 7.2 7.4 7.7 7.7 8.0 8.0
ATMAPQ >= 30 28.8 9.9 16.4 9.4 10.3 11.6 11.0 10.6 9.2 9.8 9.8 9.4 9.4 9.1 9.2 9.1 9.1 8.9 9.0 8.9 8.9 8.8 8.7 8.7 8.7 8.6 8.6 8.6 8.6 8.5 8.7 8.5 8.6 8.6 8.6 8.6 8.6 8.6 8.6 8.6 8.6 8.6 8.6 8.6 8.6 8.6 8.6 8.5 8.6 8.5 8.6 7.3 9.4 8.5 8.6 8.5 8.5 8.5 8.5 8.5 8.5 8.4 8.5 8.5 8.5 8.5 8.5 8.5 8.5 8.5 8.6 8.6 8.6 8.6
ATMAPQ >= 20 29.4 10.3 16.2 9.6 10.1 12.5 11.2 10.4 9.5 9.5 11.1 10.0 9.7 9.5 9.3 9.9 9.6 9.1 9.8 9.1 9.5 9.5 8.7 9.5 8.8 8.8 9.4 8.7 9.1 8.8 9.0 9.2 8.9 8.9 8.9 8.9 9.2 8.8 8.8 9.0 8.8 9.1 8.8 8.7 9.0 8.8 9.2 8.5 8.5 9.3 9.2 7.1 9.9 8.3 9.2 9.0 8.7 8.9 8.5 8.8 9.2 8.5 9.1 8.7 9.0 9.4 9.2 9.6 9.4 9.8 10.2 9.6 9.8 9.5
ATMAPQ >= 10 26.3 10.3 14.2 8.8 8.2 12.2 11.0 9.1 8.4 8.1 11.5 9.7 8.5 8.6 7.8 9.6 9.1 8.1 9.3 8.5 9.1 8.9 7.9 9.3 7.7 8.2 9.2 8.4 9.2 8.2 8.7 9.4 8.9 8.8 8.4 8.3 9.2 8.8 8.5 8.7 8.6 9.2 8.2 8.3 9.1 8.7 9.4 7.9 8.0 9.4 9.1 7.2 9.8 7.8 9.2 9.0 8.6 9.0 8.3 8.7 9.3 8.1 9.1 8.4 8.5 8.9 8.4 9.3 8.0 8.3 9.1 8.4 9.1 8.2
ATMAPQ >= 3 25.5 9.1 13.4 8.3 8.3 9.9 9.4 8.8 6.5 8.3 9.5 7.9 7.9 7.3 6.9 8.0 7.5 7.3 7.4 7.6 7.9 7.5 7.4 7.1 6.9 7.7 6.9 8.0 7.4 6.7 7.8 7.4 7.7 7.7 7.3 7.8 7.7 8.4 7.4 7.6 7.8 7.5 7.0 6.7 7.4 7.9 7.3 7.0 7.7 7.7 7.8 6.5 8.3 7.1 7.7 7.7 7.8 8.5 7.3 7.4 8.6 7.5 7.9 7.8 7.4 7.8 7.7 8.8 7.0 7.4 8.2 7.5 7.7 7.4
ATMAPQ < 3 28.4 10.5 15.6 9.4 9.4 12.9 11.5 9.9 9.2 8.9 11.5 9.8 9.1 9.1 8.5 10.2 9.5 8.7 10.0 8.9 9.6 9.8 8.4 9.8 8.6 8.5 9.9 8.9 9.5 8.9 9.1 9.9 9.3 9.1 9.1 8.8 9.7 8.9 8.9 9.1 9.1 9.6 9.0 8.5 9.7 9.0 9.7 8.6 8.6 10.0 9.6 7.6 9.7 8.5 9.8 9.3 8.9 9.5 8.8 9.3 9.5 8.5 9.4 8.7 9.3 9.3 8.8 9.8 9.0 9.0 9.7 8.7 9.7 8.9
ATUnmapped 32.4 10.8 18.4 10.0 11.0 14.3 11.9 12.1 9.9 10.5 12.1 11.0 10.9 9.8 10.0 11.1 10.9 10.2 10.0 9.6 10.9 11.0 9.8 9.9 9.3 10.8 10.6 9.7 9.9 9.0 10.9 10.1 9.7 9.3 8.8 10.9 9.5 9.8 8.9 8.7 10.6 9.1 10.4 8.5 9.8 10.1 9.9 9.4 8.9 9.4 10.5 8.1 7.9 9.2 9.4 10.6 10.1 9.4 9.7 9.3 11.1 10.1 9.9 10.0 9.7 11.5 10.5 10.3 10.3 9.8 11.6 10.1 10.1 9.5
CAMAPQ >= 30 3.7 3.5 4.9 7.8 6.8 7.7 5.4 6.8 7.1 6.8 6.5 6.6 6.6 6.8 6.9 6.9 6.9 7.0 7.0 7.0 7.1 7.1 7.1 7.2 7.1 7.2 7.2 7.2 7.2 7.2 7.2 7.3 7.2 7.2 7.3 7.3 7.2 7.2 7.2 7.3 7.2 7.3 7.3 7.3 7.3 7.3 7.2 7.3 7.3 7.3 7.3 7.5 6.2 7.4 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.2 7.3 7.3 7.2 7.2 7.2 7.2 7.2 7.1 7.2
CAMAPQ >= 20 3.3 3.7 5.0 7.7 7.2 7.7 5.3 6.8 7.3 7.5 6.6 6.6 6.7 6.7 7.2 6.8 6.7 6.9 7.1 7.2 7.0 7.0 7.2 7.1 7.2 7.3 6.9 6.9 7.2 7.2 7.3 7.3 7.3 7.0 7.6 7.4 7.3 7.1 7.3 7.3 7.2 7.2 7.1 7.6 7.5 7.5 7.1 7.3 7.4 7.4 7.3 7.5 6.0 7.6 7.5 7.3 7.1 7.3 7.3 7.6 7.2 7.3 7.1 7.4 7.2 6.9 7.2 7.1 7.2 7.0 6.8 6.7 6.8 6.7
CAMAPQ >= 10 4.4 3.8 5.5 8.3 8.0 8.6 5.2 7.6 8.0 9.0 7.2 7.2 7.4 7.4 8.2 7.5 7.1 7.6 8.1 7.9 7.8 7.5 8.0 7.8 8.0 8.1 7.4 7.5 8.1 7.8 8.2 8.0 7.8 7.5 8.7 8.5 8.2 7.8 8.0 7.7 7.7 7.5 7.7 8.1 8.5 7.8 7.5 7.9 8.1 7.7 7.7 7.9 6.4 8.3 8.1 8.1 7.9 8.2 8.0 8.5 7.7 8.4 7.7 8.5 8.1 7.6 8.3 7.8 7.9 7.7 7.9 7.8 7.7 7.5
CAMAPQ >= 3 4.6 3.8 6.0 8.4 7.6 9.4 5.7 8.1 8.0 9.0 7.2 7.6 7.5 7.6 8.7 8.1 7.2 7.8 8.3 7.9 8.4 8.0 8.1 8.4 8.5 8.6 8.5 7.9 8.7 8.3 9.3 8.0 8.2 7.8 8.5 8.4 8.7 7.2 7.9 7.9 8.2 7.9 7.9 7.7 9.2 7.5 8.2 8.0 8.4 8.6 8.1 8.2 6.6 7.9 8.0 8.1 8.4 7.8 7.7 8.6 7.3 8.1 7.9 8.1 8.3 8.3 8.8 7.3 8.2 7.8 7.7 7.9 8.3 7.8
CAMAPQ < 3 4.1 3.8 5.5 8.3 7.9 8.6 5.4 7.4 8.0 8.6 7.0 7.1 7.1 7.2 7.9 7.4 6.9 7.5 7.8 7.6 7.9 7.4 7.9 7.5 7.7 8.0 7.6 7.5 7.8 7.7 8.1 7.9 7.9 7.5 8.2 8.0 7.8 7.4 7.8 7.6 7.8 7.5 7.4 8.1 8.1 7.6 7.5 7.7 8.0 7.9 7.4 7.6 6.4 8.1 7.8 7.6 7.9 7.9 8.0 8.3 7.7 7.9 7.6 7.9 8.0 7.6 8.2 7.6 7.7 7.7 7.6 7.7 7.5 7.5
CAUnmapped 2.9 3.6 4.4 7.0 7.4 7.0 5.2 6.2 6.8 7.7 6.1 6.3 5.8 6.3 7.2 6.2 6.2 6.2 6.5 7.6 6.6 6.4 6.2 6.5 7.3 6.4 6.4 6.2 6.5 7.6 6.6 6.7 6.4 6.5 7.8 6.5 6.9 6.3 6.8 7.5 6.5 6.9 6.1 7.0 7.4 6.8 6.6 6.5 6.7 7.8 6.6 5.6 5.3 6.9 7.5 6.5 6.3 6.2 6.5 7.4 6.3 6.2 5.9 6.2 6.9 5.8 5.9 5.5 5.8 6.5 5.6 5.5 5.5 5.6
CCMAPQ >= 30 1.8 2.0 2.5 1.8 2.7 3.2 3.5 4.1 3.7 3.7 3.7 3.7 3.7 3.9 3.9 3.9 4.0 4.0 4.0 4.0 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.1 4.2 4.2 4.2 4.2 4.2 4.1 4.2 4.2 4.2 4.3 4.3 4.3 4.2 4.2 4.2 4.2 4.2 4.2 4.2 3.6 3.6 4.2 4.2 4.3 4.2 4.2 4.3 4.3 4.3 4.3 4.3 4.3 4.2 4.3 4.2 4.2 4.2 4.2 4.1 4.1 4.2 4.2
CCMAPQ >= 20 1.6 2.1 2.5 2.6 2.9 3.2 3.6 4.2 4.3 3.7 3.6 3.6 3.5 4.3 3.8 3.9 4.0 4.1 4.2 4.0 4.1 4.0 3.9 4.1 4.2 3.9 4.2 4.0 4.1 4.2 4.1 4.1 4.2 4.5 4.5 4.2 4.3 4.2 4.3 4.4 4.3 4.3 4.5 4.6 4.4 4.3 4.2 4.4 4.4 4.4 4.3 3.4 3.6 4.4 4.1 4.2 4.0 4.2 4.5 4.4 4.3 4.2 4.4 4.5 4.0 4.2 4.2 4.0 4.3 3.9 4.0 4.0 4.2 4.4
CCMAPQ >= 10 2.6 2.5 3.2 3.7 3.7 4.1 4.5 5.4 5.9 4.7 4.4 4.5 4.3 5.9 4.9 4.7 5.4 5.4 5.5 5.1 5.3 5.3 4.9 5.1 5.5 5.1 5.5 5.1 4.9 5.0 5.1 5.1 5.2 5.8 5.7 5.3 5.7 5.1 5.1 5.4 5.2 5.6 5.7 6.0 5.4 5.7 5.3 5.6 5.5 5.6 5.2 4.3 4.8 5.5 5.2 5.4 5.3 5.4 6.0 5.6 5.1 5.3 5.9 5.9 5.3 5.8 5.6 5.1 5.6 5.2 5.0 5.2 5.5 5.8
CCMAPQ >= 3 2.7 3.0 3.4 3.4 3.9 4.6 4.7 6.3 6.2 5.2 4.7 4.5 4.6 5.9 5.1 5.3 5.5 5.7 6.2 5.3 5.9 5.6 5.8 6.1 6.2 6.0 5.6 6.0 5.7 5.5 5.6 5.2 5.6 6.7 6.5 6.0 5.5 5.5 5.6 5.7 5.7 6.1 6.1 7.1 6.1 6.5 6.2 6.0 6.4 6.1 5.6 4.7 4.9 5.7 5.5 5.9 5.7 5.6 6.4 5.7 5.3 5.7 6.0 6.2 5.5 6.2 5.9 5.6 5.4 5.4 5.7 6.1 6.3 6.5
CCMAPQ < 3 2.3 2.2 2.8 3.3 3.3 3.6 4.0 4.8 5.2 4.3 4.0 3.9 3.9 4.9 4.4 4.3 4.5 4.6 4.7 4.5 4.5 4.6 4.4 4.6 4.9 4.5 4.6 4.3 4.4 4.7 4.5 4.4 4.5 4.9 5.1 4.5 4.6 4.5 4.5 4.7 4.5 4.5 4.9 5.1 4.7 4.7 4.6 4.9 4.8 4.7 4.6 3.8 4.2 4.7 4.5 4.8 4.5 4.8 4.9 4.7 4.6 4.5 4.9 5.0 4.6 4.8 4.6 4.4 4.7 4.4 4.7 4.5 4.7 4.9
CCUnmapped 1.4 1.7 2.2 3.0 2.6 2.9 3.1 3.6 4.4 3.3 3.2 3.0 3.2 4.3 3.3 3.3 3.1 3.4 4.4 3.4 3.5 3.2 3.4 4.3 3.5 3.5 3.3 3.5 4.5 3.6 3.7 3.4 3.7 4.6 3.8 3.8 3.6 3.7 4.7 3.8 3.8 3.5 3.8 4.7 3.7 3.7 3.6 3.8 4.7 3.8 3.9 2.8 3.1 4.7 3.7 3.8 3.4 3.7 4.6 3.8 3.8 3.6 3.8 4.6 3.7 3.6 3.3 3.5 4.4 3.4 3.5 3.2 3.4 4.3
CGMAPQ >= 30 0.2 0.2 0.3 0.5 0.5 0.6 0.4 0.7 0.7 0.6 0.6 0.6 0.6 0.6 0.6 0.7 0.6 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.8 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.8 0.8 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.7 0.8 0.8
CGMAPQ >= 20 0.5 0.4 0.5 1.1 0.8 1.2 0.6 1.2 1.4 1.1 0.9 0.9 1.0 1.1 1.0 1.2 1.0 1.0 1.2 1.1 1.1 1.2 1.2 1.1 1.2 1.1 1.2 1.0 1.1 1.2 1.2 1.4 1.2 1.2 1.4 1.2 1.3 1.1 1.3 1.3 1.2 1.3 1.2 1.2 1.3 1.2 1.2 1.3 1.2 1.2 1.2 1.2 1.2 1.3 1.3 1.3 1.3 1.6 1.3 1.3 1.3 1.3 1.3 1.3 1.3 1.2 1.2 1.3 1.3 1.2 1.3 1.2 1.4 1.5
CGMAPQ >= 10 0.7 0.4 0.6 1.9 1.1 1.9 0.8 2.0 2.5 1.7 1.4 1.4 1.7 2.0 1.7 2.1 1.6 1.5 2.1 2.0 1.8 1.9 1.8 1.7 1.8 1.7 1.7 1.4 1.7 1.8 1.5 2.0 1.6 1.5 2.0 1.7 1.8 1.7 1.8 2.1 1.6 1.9 1.7 1.6 1.8 1.7 1.7 1.9 1.7 1.6 1.8 1.7 1.7 1.7 1.9 1.8 1.6 2.3 1.9 1.9 1.8 1.8 1.8 2.0 1.9 1.7 1.8 1.7 1.8 1.8 1.9 1.6 1.6 1.9
CGMAPQ >= 3 0.5 0.4 0.5 1.0 1.0 1.3 0.7 1.7 1.3 1.0 1.3 1.1 1.1 1.1 1.2 1.3 1.2 1.2 1.2 1.7 1.3 1.4 1.5 1.3 1.3 1.3 1.1 1.3 1.4 1.3 1.4 1.2 1.4 1.1 1.4 1.2 1.3 1.4 1.3 1.6 1.2 1.1 1.4 1.2 1.3 1.2 1.2 1.3 1.2 1.4 1.4 1.2 1.3 1.4 1.3 1.3 1.4 1.3 1.1 1.3 1.3 1.3 1.2 1.2 1.3 1.2 1.4 1.3 1.4 1.3 1.2 1.2 1.2 1.2
CGMAPQ < 3 0.5 0.4 0.5 1.4 0.9 1.4 0.6 1.5 2.0 1.3 1.1 1.2 1.3 1.6 1.4 1.5 1.3 1.2 1.6 1.5 1.3 1.6 1.5 1.4 1.5 1.4 1.5 1.2 1.4 1.5 1.4 1.7 1.3 1.3 1.7 1.5 1.5 1.4 1.6 1.6 1.3 1.5 1.4 1.3 1.6 1.4 1.4 1.6 1.5 1.5 1.4 1.3 1.4 1.4 1.6 1.4 1.4 1.7 1.4 1.4 1.5 1.5 1.4 1.4 1.6 1.4 1.3 1.5 1.5 1.4 1.5 1.3 1.4 1.5
CGUnmapped 0.3 0.4 0.5 1.0 0.8 1.0 0.6 1.0 1.2 1.0 0.9 0.9 1.0 1.2 1.1 1.0 1.0 1.0 1.2 1.1 1.0 1.0 1.1 1.2 1.3 1.2 1.2 1.2 1.5 1.4 1.3 1.3 1.4 1.6 1.6 1.5 1.6 1.6 1.8 1.7 1.6 1.6 1.6 1.7 1.6 1.6 1.5 1.6 1.7 1.6 1.6 1.5 1.4 1.9 1.8 1.8 1.9 2.0 2.1 2.1 2.0 2.1 2.2 2.4 2.4 2.3 2.4 2.5 2.8 2.8 2.9 3.0 3.4 3.7
CTMAPQ >= 30 4.9 4.2 4.5 4.7 4.6 6.8 6.1 7.0 6.2 6.4 6.3 6.3 6.3 6.2 6.3 6.3 6.2 6.3 6.2 6.2 6.2 6.3 6.2 6.3 6.2 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.4 6.4 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.4 6.4 6.4 6.3 6.3 6.4 6.3 6.3 6.4 6.4 5.4 5.5 6.3 6.3 6.4 6.3 6.4 6.4 6.4 6.4 6.4 6.3 6.3 6.4 6.3 6.4 6.3 6.3 6.3 6.3 6.3 6.2 6.4
CTMAPQ >= 20 4.2 4.1 4.4 4.7 4.4 6.4 5.8 6.8 5.9 6.2 6.0 6.0 6.0 5.9 6.1 6.0 5.8 6.4 6.0 6.0 6.1 6.0 5.9 5.8 5.9 6.0 5.8 6.0 5.8 5.9 5.9 5.8 6.1 5.9 6.0 5.9 5.9 5.9 6.0 6.1 6.1 6.5 6.2 6.2 6.0 6.1 6.0 6.0 6.0 6.0 6.1 5.0 5.1 5.8 6.1 5.8 6.0 5.8 6.0 5.9 6.1 5.7 5.8 5.7 6.1 5.7 5.8 5.6 5.8 5.5 5.7 5.8 5.9 6.0
CTMAPQ >= 10 5.0 3.8 4.5 5.2 4.5 7.1 6.1 7.1 6.0 6.3 5.9 6.1 6.2 5.9 6.4 6.3 5.9 6.9 6.1 6.0 6.2 6.1 6.0 5.7 5.9 5.9 6.0 6.3 5.9 5.7 6.1 5.9 6.3 6.0 6.3 5.6 5.9 6.2 6.2 6.1 6.2 6.9 6.4 6.5 6.1 6.3 6.5 6.1 6.1 6.0 6.6 5.4 5.6 5.5 6.2 5.7 6.2 6.0 6.0 6.3 6.7 6.0 5.8 5.9 6.7 6.2 6.7 6.2 6.4 5.9 6.0 5.7 5.9 6.2
CTMAPQ >= 3 5.5 4.1 5.0 5.7 4.9 7.4 6.3 7.2 6.3 6.2 6.5 6.3 6.7 6.2 6.7 6.6 6.2 7.3 6.2 6.2 6.2 6.1 6.5 5.9 7.0 6.0 6.6 6.7 6.1 6.1 6.4 6.4 6.4 5.8 6.9 6.3 6.4 6.4 6.4 6.6 6.2 7.5 6.9 7.4 6.5 6.5 7.0 6.5 6.1 6.3 6.9 5.8 6.2 6.0 6.5 6.3 6.1 6.8 6.7 7.0 7.0 6.8 6.5 6.6 7.1 6.6 7.1 6.6 6.7 6.3 6.7 6.4 6.4 6.6
CTMAPQ < 3 4.7 3.7 4.3 4.8 4.5 6.8 5.9 6.9 5.9 6.2 5.9 5.8 5.8 5.8 5.9 6.1 5.8 6.4 6.0 6.0 6.0 5.9 5.9 5.6 5.9 5.8 5.7 5.9 5.8 5.7 6.0 5.8 6.1 5.7 6.0 5.8 5.8 5.8 5.8 6.0 6.1 6.3 6.3 6.1 6.0 6.1 5.9 6.0 5.8 5.8 6.1 5.0 5.2 5.7 6.0 5.8 5.9 5.8 6.0 5.9 6.3 5.9 5.9 5.9 6.3 5.9 6.0 5.8 5.9 5.6 6.0 5.7 5.9 6.1
CTUnmapped 3.6 3.7 3.9 4.2 4.1 5.8 5.2 5.9 5.3 5.5 5.3 5.2 5.3 5.1 5.3 5.2 5.3 5.4 5.4 5.3 5.3 5.5 5.1 5.1 5.1 5.1 5.2 4.9 5.1 5.0 5.2 5.3 5.2 5.1 5.1 5.1 5.2 5.0 5.2 5.1 5.3 5.3 5.2 5.1 5.0 5.1 5.0 5.0 5.0 4.9 5.1 4.1 4.2 4.9 5.2 4.7 5.2 4.7 5.0 4.8 5.0 5.0 4.8 4.9 4.9 4.9 5.1 4.7 4.9 4.7 4.8 4.8 4.7 4.8
GAMAPQ >= 30 4.1 8.2 6.0 6.5 8.0 6.7 5.6 4.0 5.1 5.5 5.4 5.6 5.6 5.8 5.8 5.9 6.0 6.1 6.2 6.1 6.2 6.2 6.2 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.4 6.3 6.3 6.3 6.2 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.3 6.8 5.6 6.3 6.3 6.3 6.3 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.4 6.3 6.5
GAMAPQ >= 20 4.7 8.3 5.7 6.9 8.6 7.0 5.8 4.3 5.5 6.4 5.7 5.9 6.0 6.1 6.5 6.1 6.4 6.4 6.3 6.6 6.6 6.7 6.7 6.6 6.8 6.8 7.2 6.9 6.9 6.8 6.7 6.7 6.7 6.6 6.7 6.7 6.6 6.7 6.7 6.7 6.7 6.6 6.6 6.7 6.6 6.9 6.4 6.7 7.1 6.9 6.7 7.3 5.9 7.0 6.8 6.8 6.9 6.6 7.2 6.8 6.9 6.9 6.7 7.0 6.8 6.8 6.8 6.3 6.6 6.5 6.5 6.5 6.3 6.7
GAMAPQ >= 10 5.7 9.3 6.4 7.7 10.1 7.9 6.2 4.5 6.0 7.5 6.6 6.0 6.6 6.7 7.8 7.0 7.1 7.1 6.5 7.3 7.1 7.4 7.3 7.0 7.3 7.3 8.1 7.4 7.2 7.2 7.6 7.2 7.0 6.4 7.0 7.2 6.6 7.3 7.3 7.4 7.5 6.8 7.4 7.2 7.2 7.4 6.6 7.1 8.2 7.3 7.1 7.8 6.5 7.6 7.3 7.5 7.5 6.6 7.9 7.5 7.2 7.1 7.0 6.7 7.3 7.0 7.3 6.8 7.4 7.3 7.9 7.5 7.1 7.2
GAMAPQ >= 3 4.4 8.6 6.4 6.9 7.8 7.1 5.7 4.2 5.9 6.0 6.1 5.8 6.0 5.7 6.4 6.1 6.4 5.9 6.8 6.1 6.8 6.6 6.0 6.8 6.1 6.3 7.1 6.2 6.6 6.5 6.3 6.7 6.1 5.9 6.3 6.7 5.9 7.0 6.4 6.5 6.6 5.8 6.2 6.3 6.4 6.3 6.2 6.2 7.0 6.1 6.4 7.0 5.9 6.4 7.1 6.8 7.0 6.2 6.7 7.0 6.4 6.4 6.3 5.7 6.0 6.0 6.1 5.9 6.4 6.6 6.8 6.7 6.1 6.4
GAMAPQ < 3 5.4 9.0 6.2 7.4 9.6 7.6 6.0 4.5 5.7 7.2 6.2 6.3 6.6 6.7 7.6 6.8 6.9 7.0 6.5 7.2 7.0 6.9 7.3 6.9 7.2 7.4 7.7 7.4 7.1 7.4 7.3 6.8 6.9 6.6 7.0 7.2 6.8 7.2 7.1 7.2 7.3 6.8 6.9 7.2 7.0 7.3 6.6 7.1 7.6 7.4 7.0 7.2 6.4 7.6 7.2 7.2 7.2 6.8 7.5 7.0 7.1 7.1 7.0 7.2 7.0 7.1 7.4 6.8 7.4 7.3 7.2 7.5 6.8 7.2
GAUnmapped 4.5 7.7 5.1 6.4 8.2 6.7 5.5 3.9 5.3 6.2 5.5 5.7 5.3 6.0 6.4 5.8 5.9 5.6 6.1 6.6 6.4 6.3 6.0 6.6 7.0 6.7 6.7 6.3 6.9 7.5 6.8 6.7 6.2 6.8 7.3 6.8 6.7 6.4 6.9 7.3 6.7 6.8 6.3 6.8 7.1 6.7 6.6 6.4 6.9 7.3 6.9 5.7 5.6 7.1 7.4 7.0 6.9 6.6 7.3 7.5 7.3 7.1 6.8 7.4 7.6 7.4 7.2 7.0 7.6 8.2 7.9 7.9 7.7 8.7
GCMAPQ >= 30 1.4 1.5 2.6 2.5 3.5 2.6 3.1 2.6 2.9 3.1 3.1 3.2 3.3 3.4 3.4 3.4 3.5 3.5 3.5 3.6 3.6 3.7 3.7 3.7 3.7 3.7 3.8 3.7 3.7 3.7 3.8 3.8 3.7 3.7 3.7 3.7 3.7 3.8 3.7 3.7 3.8 3.7 3.7 3.7 3.7 3.8 3.8 3.7 3.7 3.7 3.8 3.2 3.3 3.8 3.8 3.7 3.8 3.8 3.8 3.8 3.8 3.8 3.8 3.8 3.8 3.8 3.7 3.7 3.7 3.7 3.7 3.7 3.8 3.7
GCMAPQ >= 20 1.3 1.5 2.6 2.6 3.3 2.6 3.0 2.5 2.8 2.9 2.9 3.0 3.0 3.2 3.2 3.1 3.4 3.4 3.3 3.5 3.5 3.6 3.5 3.7 3.6 3.6 3.6 3.7 3.6 3.7 3.6 3.7 3.5 3.6 3.6 3.6 3.6 3.7 3.6 3.5 3.7 3.6 3.6 3.6 3.5 3.6 3.6 3.6 3.7 3.7 3.6 3.1 3.2 3.7 3.8 3.6 3.8 3.8 3.8 3.7 3.6 3.6 3.7 3.6 3.6 3.6 3.4 3.4 3.2 3.3 3.3 3.5 3.3 3.4
GCMAPQ >= 10 1.5 1.8 3.3 2.9 4.0 2.9 3.7 2.8 3.3 3.6 3.4 3.7 3.7 3.8 4.0 3.6 4.0 3.9 3.8 4.2 3.9 4.3 4.1 4.5 4.0 4.1 4.2 4.2 4.1 4.5 4.2 4.3 4.0 4.3 4.1 4.0 4.1 4.5 3.9 3.7 4.2 3.9 3.8 3.9 4.0 4.1 3.9 3.9 4.0 3.9 3.9 3.6 3.4 4.1 4.7 4.1 4.4 4.2 4.3 3.9 4.1 4.0 4.4 4.2 4.4 4.4 4.0 4.0 3.8 4.0 4.2 4.2 3.8 4.2
GCMAPQ >= 3 1.8 2.2 3.8 3.1 4.5 3.0 4.5 3.4 3.6 3.9 4.0 4.3 3.8 4.6 4.4 4.0 4.6 4.2 4.2 4.5 4.1 4.8 4.2 5.1 4.5 4.5 4.7 4.6 4.3 5.1 4.7 4.6 4.3 4.5 4.6 4.3 4.1 4.4 4.5 4.1 4.4 4.5 4.0 4.4 4.2 4.6 4.0 4.2 4.3 4.5 4.5 4.0 3.7 4.4 5.0 4.4 4.7 4.4 4.6 4.1 4.8 4.7 4.9 4.7 5.1 5.1 4.6 4.6 4.5 4.8 4.8 4.7 4.1 4.7
GCMAPQ < 3 1.4 1.5 2.7 2.7 3.6 2.6 3.1 2.6 3.0 3.0 3.0 3.2 3.2 3.4 3.4 3.2 3.6 3.5 3.5 3.7 3.5 3.8 3.5 3.9 3.7 3.6 3.7 3.9 3.6 4.0 3.7 3.8 3.5 3.7 3.7 3.5 3.6 3.8 3.5 3.5 3.6 3.6 3.6 3.5 3.5 3.6 3.5 3.5 3.7 3.7 3.6 3.2 3.1 3.6 3.8 3.6 3.8 3.7 3.7 3.6 3.7 3.7 3.8 3.8 3.7 3.8 3.5 3.6 3.4 3.6 3.6 3.7 3.5 3.6
GCUnmapped 1.1 1.2 2.1 2.2 2.7 2.1 2.3 2.1 2.5 2.4 2.4 2.4 2.5 2.6 2.6 2.6 2.7 2.8 3.0 3.0 2.9 2.9 2.9 3.2 3.0 3.0 3.0 3.2 3.1 3.2 3.0 3.1 3.0 3.2 3.1 3.1 3.1 3.3 3.2 3.2 3.2 3.2 3.4 3.3 3.3 3.2 3.3 3.3 3.6 3.5 3.4 2.8 3.0 3.5 3.4 3.4 3.5 3.4 3.4 3.4 3.3 3.3 3.3 3.4 3.3 3.3 3.1 3.2 3.2 3.3 3.2 3.4 3.4 3.6
GGMAPQ >= 30 4.0 4.9 4.2 3.1 3.6 3.4 2.8 2.7 3.4 3.8 3.8 3.9 4.0 4.1 4.3 4.3 4.4 4.5 4.5 4.5 4.6 4.6 4.6 4.7 4.7 4.8 4.7 4.7 4.7 4.8 4.8 4.7 4.6 4.7 4.7 4.7 4.8 4.7 4.7 4.7 4.7 4.7 4.7 4.7 4.7 4.7 4.7 4.7 4.7 4.7 4.7 4.1 4.1 4.7 4.7 4.8 4.7 4.8 4.8 4.8 4.8 4.8 4.8 4.8 4.8 4.8 4.8 4.8 4.9 4.9 4.8 4.8 4.8 4.8
GGMAPQ >= 20 3.8 4.5 4.4 3.6 3.9 3.4 2.9 2.9 3.7 3.8 4.0 3.7 3.9 4.2 4.2 4.2 4.3 4.4 4.7 4.5 4.8 4.4 4.5 4.9 4.8 5.0 4.9 4.9 5.0 4.9 5.1 4.7 4.7 4.9 4.8 4.9 5.1 4.8 4.8 5.0 5.0 4.8 4.7 4.8 4.8 4.6 4.8 4.8 4.8 4.8 4.8 4.1 4.2 5.0 4.9 5.0 4.8 5.0 4.9 4.9 4.9 4.8 5.1 5.0 5.0 4.9 4.7 4.6 4.7 4.7 4.6 4.5 4.6 4.5
GGMAPQ >= 10 5.6 6.1 5.7 4.7 5.1 4.8 3.5 3.6 5.0 5.2 5.3 4.5 4.6 5.3 5.6 5.2 5.2 5.5 6.2 5.6 6.2 5.3 5.5 6.2 5.9 6.3 6.0 5.9 6.3 6.3 6.3 5.2 5.0 5.7 5.4 5.4 5.8 5.2 5.4 5.7 5.6 5.2 5.2 5.3 5.4 4.8 5.4 5.4 5.4 5.6 5.5 4.6 4.8 5.8 5.7 5.7 5.1 5.5 5.4 5.3 5.3 5.0 5.3 5.6 5.6 5.5 5.1 5.0 5.4 6.2 5.4 5.1 5.5 5.3
GGMAPQ >= 3 6.0 6.8 5.7 4.3 4.8 5.6 4.0 4.0 5.2 6.2 5.4 5.4 5.2 5.5 6.1 6.0 5.5 6.2 6.7 6.2 6.6 5.5 5.8 6.1 6.5 6.9 6.2 6.4 6.6 6.7 6.7 5.8 5.8 6.0 5.8 5.7 5.8 5.5 5.9 5.5 5.7 5.3 5.7 5.4 5.7 5.3 5.4 6.1 5.6 5.7 5.6 4.7 4.9 6.6 6.3 6.1 5.4 6.1 6.3 5.8 5.9 5.2 5.3 5.9 6.0 5.7 5.4 5.6 6.0 6.3 5.8 5.4 5.9 5.7
GGMAPQ < 3 4.7 5.0 4.9 4.1 4.4 3.8 3.0 3.1 4.1 4.3 4.4 4.1 4.5 4.9 4.7 4.7 4.5 4.9 5.1 4.7 5.2 4.6 4.8 5.3 5.0 5.2 5.2 5.0 5.4 5.2 5.1 4.6 4.6 5.1 4.9 4.9 5.1 4.8 5.0 5.0 5.0 4.7 4.8 4.9 4.8 4.5 4.9 4.8 5.0 5.0 4.9 4.3 4.3 5.2 4.9 4.9 4.9 4.9 4.9 5.0 5.0 4.7 5.1 5.0 5.1 5.0 4.7 4.8 4.9 5.2 5.0 4.8 5.2 4.9
GGUnmapped 3.3 3.5 3.8 3.4 3.5 3.0 2.5 2.8 3.6 3.6 3.5 3.2 3.7 3.9 3.8 3.9 3.6 4.1 4.5 4.2 4.4 4.0 4.4 4.8 4.5 4.5 4.3 4.8 5.2 4.8 4.9 4.4 5.1 5.3 5.0 5.0 4.8 5.2 5.4 5.3 5.2 4.9 5.2 5.3 5.0 4.9 4.7 5.2 5.4 5.1 5.1 4.0 4.3 5.4 5.2 5.1 4.7 5.1 5.3 5.1 5.1 4.6 5.1 5.2 5.1 4.9 4.5 5.0 5.3 5.2 5.1 4.8 5.5 5.8
GTMAPQ >= 30 5.6 4.3 5.1 4.5 4.2 4.8 5.0 4.2 4.1 4.7 4.7 4.7 4.8 4.7 4.9 4.9 4.9 4.9 5.0 5.0 5.0 5.0 5.0 5.0 5.1 5.0 5.0 5.1 5.1 5.1 5.2 5.1 5.1 5.1 5.1 5.1 5.1 5.1 5.0 5.0 5.1 5.0 5.0 5.0 5.0 5.0 5.1 5.0 5.0 5.0 5.0 4.3 4.5 5.0 5.0 5.0 5.0 5.1 5.0 5.0 5.0 5.0 5.0 5.0 5.0 5.0 5.0 5.0 5.0 5.0 5.0 5.0 5.0 5.1
GTMAPQ >= 20 5.3 4.1 4.7 4.3 4.0 4.6 4.7 3.9 4.0 4.6 4.4 4.6 4.4 4.5 4.6 4.6 4.7 4.6 4.7 4.7 4.8 4.8 4.8 4.8 5.0 4.8 5.0 4.9 5.1 5.0 5.1 5.1 4.9 5.0 4.8 4.9 4.9 5.1 4.8 4.8 5.0 4.8 4.8 4.9 4.9 4.9 4.9 5.0 4.8 4.9 4.8 3.9 4.3 4.7 5.0 4.7 5.0 4.8 4.9 4.6 4.9 4.6 4.8 4.6 4.7 4.5 4.7 4.4 4.7 4.6 4.9 4.8 4.8 4.8
GTMAPQ >= 10 5.5 4.4 4.8 4.5 4.0 4.4 5.2 4.0 4.1 4.7 4.3 5.1 4.7 4.9 4.6 4.8 4.6 4.6 4.6 4.8 4.7 4.9 4.9 4.8 4.9 4.7 5.1 4.6 4.9 4.8 5.1 4.9 5.0 4.6 4.6 4.9 4.8 5.0 4.4 4.5 5.2 4.8 4.6 4.8 4.7 4.9 4.7 5.0 4.7 5.0 4.5 4.0 4.3 4.6 5.0 4.5 4.8 4.4 4.5 4.4 4.6 4.4 4.6 4.5 4.5 4.5 4.6 4.5 4.9 4.8 4.9 4.5 4.8 4.6
GTMAPQ >= 3 6.1 4.6 5.8 5.2 4.5 4.9 5.4 4.3 4.6 4.8 4.7 5.3 5.4 5.2 4.6 5.2 4.9 5.0 4.9 5.1 4.9 5.5 4.8 5.2 4.9 5.1 5.3 5.2 5.0 5.4 5.3 5.3 5.3 4.9 5.0 5.4 5.0 5.3 5.1 5.1 5.8 5.5 5.0 5.0 5.2 5.6 5.1 5.2 5.3 5.1 5.0 4.1 4.5 4.8 5.9 4.7 5.1 4.6 4.6 4.8 4.6 4.8 4.6 5.1 5.0 5.3 4.9 5.0 5.3 5.2 5.1 4.8 5.2 5.2
GTMAPQ < 3 5.5 4.1 4.7 4.3 4.0 4.5 4.9 3.9 4.0 4.6 4.4 4.7 4.6 4.7 4.7 4.6 4.7 4.6 4.7 4.7 4.8 4.8 4.7 4.8 4.9 4.6 4.9 4.9 4.8 4.9 4.9 4.9 4.9 4.7 4.7 4.9 4.7 5.0 4.8 4.7 5.0 4.8 4.7 4.7 4.9 4.8 4.9 4.9 4.8 4.8 4.8 4.0 4.3 4.6 4.9 4.6 4.9 4.5 4.6 4.5 4.7 4.5 4.7 4.5 4.8 4.6 4.8 4.5 5.0 4.8 5.0 4.8 4.9 4.9
GTUnmapped 5.1 3.7 4.4 3.9 3.5 4.2 4.3 3.7 3.9 4.3 4.3 4.4 4.2 4.3 4.5 4.3 4.6 4.3 4.6 4.5 4.5 4.5 4.5 4.5 4.6 4.5 4.8 4.6 4.8 4.5 4.7 4.9 4.4 4.9 4.5 4.7 4.5 4.6 4.7 4.5 4.9 4.5 4.8 4.6 4.9 4.7 4.7 4.7 4.6 4.7 4.7 3.8 4.1 4.5 4.7 4.5 4.9 4.5 4.6 4.2 4.6 4.5 4.3 4.3 4.3 4.3 4.6 4.1 4.5 4.4 4.7 4.5 4.4 4.5
TAMAPQ >= 30 2.1 17.5 10.1 14.1 8.9 7.5 8.3 7.9 9.0 8.4 8.3 8.3 8.0 8.1 8.0 8.0 7.9 7.9 7.8 7.8 7.6 7.6 7.5 7.5 7.5 7.5 7.4 7.4 7.4 7.5 7.4 7.4 7.3 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.4 7.5 7.4 7.4 7.3 8.4 6.3 7.4 7.3 7.3 7.3 7.4 7.3 7.3 7.2 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.3 7.4
TAMAPQ >= 20 1.8 16.1 9.2 13.1 8.3 6.9 7.6 7.4 8.3 7.9 7.7 7.9 7.5 7.6 7.6 7.5 7.4 7.3 7.4 7.3 7.1 7.2 6.9 6.9 6.8 6.9 6.7 6.8 6.7 6.8 6.7 6.8 6.7 6.7 6.7 6.7 6.6 6.7 6.8 6.8 6.7 6.7 6.6 6.7 6.7 6.8 6.6 6.8 6.7 6.7 6.5 8.1 5.5 6.7 6.5 6.6 6.6 6.6 6.5 6.6 6.5 6.7 6.5 6.7 6.6 6.7 6.7 7.2 7.2 7.4 7.6 7.7 7.5 7.8
TAMAPQ >= 10 1.4 11.9 6.9 9.4 5.7 4.7 5.2 5.1 5.8 5.8 5.3 5.7 5.4 5.4 5.3 5.0 5.3 5.0 5.4 5.5 4.8 5.3 4.7 4.9 4.9 4.8 4.7 5.0 4.7 4.7 4.6 5.0 4.8 4.6 4.7 5.0 4.9 4.8 5.0 4.9 4.8 4.7 4.7 4.8 4.9 5.0 4.8 5.3 4.9 4.9 4.7 6.1 4.0 4.8 4.7 4.7 4.9 4.9 4.9 5.0 4.9 4.9 5.0 4.8 5.0 5.0 5.0 4.9 4.9 5.0 4.9 4.9 4.5 4.9
TAMAPQ >= 3 1.6 12.7 7.5 10.0 6.0 5.5 5.6 5.5 6.2 6.1 5.4 6.1 5.4 5.9 5.6 5.7 5.9 5.1 5.8 5.4 4.9 5.2 4.9 4.8 5.0 5.0 4.7 5.0 4.9 4.7 5.0 4.9 5.3 4.8 4.9 5.3 5.3 4.9 5.4 5.0 5.0 4.7 4.9 5.2 5.3 5.2 4.7 5.5 5.2 5.4 5.4 6.4 4.4 5.0 4.9 5.3 5.3 5.1 5.7 5.4 5.7 5.3 5.7 5.4 5.6 5.3 5.4 5.3 5.7 5.5 5.5 5.3 4.7 5.2
TAMAPQ < 3 1.6 14.0 7.7 10.9 6.7 5.6 6.2 6.1 6.7 6.6 6.3 6.4 6.1 6.2 6.1 6.0 6.2 5.8 6.2 6.1 5.8 6.0 5.7 5.7 5.6 5.7 5.6 5.6 5.5 5.6 5.6 5.7 5.7 5.5 5.5 5.7 5.6 5.7 5.7 5.6 5.7 5.7 5.6 5.8 5.6 5.7 5.6 5.9 5.6 5.7 5.5 6.6 4.8 5.7 5.6 5.6 5.8 5.7 5.8 5.7 5.5 5.7 5.6 5.7 5.6 5.8 5.7 5.8 5.8 5.9 5.6 5.8 5.4 5.8
TAUnmapped 1.9 19.0 9.9 15.1 9.5 7.7 9.2 8.1 9.8 8.9 9.2 8.8 8.6 8.7 8.4 8.8 8.3 8.6 8.4 8.5 8.4 8.0 8.2 8.0 7.9 8.1 7.7 8.3 7.6 8.0 7.4 7.6 7.9 7.3 8.0 7.1 7.8 7.1 7.4 7.5 7.0 7.8 6.7 8.1 7.1 7.8 7.3 7.2 7.6 7.2 7.6 6.0 6.2 7.4 7.5 7.4 7.3 7.9 7.4 7.9 7.5 7.9 8.1 7.8 8.3 8.1 8.2 8.5 8.2 8.7 8.0 8.4 7.9 7.8
TCMAPQ >= 30 0.6 5.6 4.9 4.8 5.6 4.1 6.4 6.2 6.1 5.6 5.7 5.7 5.7 5.6 5.6 5.5 5.5 5.5 5.4 5.4 5.4 5.4 5.4 5.4 5.4 5.4 5.4 5.3 5.4 5.4 5.3 5.5 5.4 5.5 5.4 5.4 5.4 5.4 5.4 5.4 5.4 5.5 5.5 5.5 5.5 5.4 5.4 5.5 5.4 5.4 5.4 4.7 4.6 5.4 5.4 5.4 5.5 5.4 5.4 5.4 5.4 5.4 5.4 5.4 5.4 5.4 5.4 5.4 5.3 5.4 5.4 5.4 5.4 5.3
TCMAPQ >= 20 0.7 5.8 6.0 5.1 6.1 4.4 7.0 7.4 6.7 5.7 6.0 5.9 6.8 5.9 6.0 5.9 5.8 6.2 5.9 5.8 5.8 5.7 5.7 5.9 5.7 5.8 5.2 5.8 5.8 5.6 5.8 5.8 5.8 6.4 5.8 6.0 5.5 6.0 5.9 5.8 6.0 6.1 6.1 6.1 5.9 5.6 6.1 6.0 5.7 5.6 5.7 5.1 4.8 5.9 5.5 5.6 6.0 6.0 5.7 5.7 5.6 5.8 5.8 5.6 5.5 5.7 5.7 6.2 5.4 5.7 5.5 5.9 6.3 5.9
TCMAPQ >= 10 0.8 6.6 8.0 5.8 7.5 4.7 8.3 9.9 8.0 6.3 6.8 6.8 8.6 6.8 6.9 6.9 6.6 7.6 7.1 6.5 6.7 6.4 6.6 6.8 6.4 6.6 5.7 6.7 6.7 6.5 6.8 6.8 6.8 8.0 6.8 7.6 6.3 6.8 7.2 6.7 7.1 7.2 7.5 7.3 7.0 6.4 7.2 7.2 6.5 6.4 6.7 6.3 5.9 7.0 6.2 6.6 7.2 7.2 6.8 6.8 6.9 6.8 6.9 6.8 6.6 6.9 6.7 7.5 6.3 6.8 6.4 6.5 7.1 6.7
TCMAPQ >= 3 0.8 6.7 6.3 5.7 7.2 4.7 7.9 7.2 6.4 5.9 5.8 6.3 7.2 6.2 6.3 6.1 5.9 6.4 5.7 6.3 5.7 6.1 6.2 6.3 5.5 5.8 6.2 6.2 6.1 6.5 5.4 6.2 6.5 6.9 5.9 6.3 5.7 5.9 6.4 6.2 6.4 6.3 7.7 6.3 5.9 5.9 5.9 6.6 5.9 5.9 5.7 5.7 5.5 5.8 6.0 6.1 5.6 6.5 6.3 5.9 6.1 5.8 5.9 5.7 6.1 6.6 5.6 6.4 6.0 6.1 5.7 6.2 6.3 6.2
TCMAPQ < 3 0.7 6.6 7.4 5.8 7.0 4.8 8.0 9.1 7.6 6.3 6.5 6.6 7.8 6.6 6.5 6.4 6.4 7.0 6.6 6.5 6.5 6.4 6.3 6.7 6.3 6.5 5.6 6.3 6.7 6.3 6.7 6.6 6.6 7.6 6.4 7.0 6.2 6.6 6.7 6.4 6.6 7.0 6.9 7.0 6.4 6.2 7.1 6.8 6.3 6.1 6.3 6.0 5.6 6.7 6.2 6.3 6.9 6.6 6.4 6.5 6.5 6.7 6.6 6.5 6.4 6.5 6.5 6.8 6.1 6.8 6.1 6.5 6.8 6.7
TCUnmapped 0.6 5.2 6.0 4.8 5.4 4.0 6.1 7.3 6.1 5.2 5.1 5.3 6.6 5.4 5.2 5.0 5.1 6.4 5.2 5.3 4.7 5.0 6.1 5.1 5.1 4.7 4.9 6.1 5.1 5.2 4.9 5.3 6.3 5.7 5.3 5.2 5.2 6.4 5.4 5.3 5.1 5.3 6.3 5.5 5.2 5.1 5.3 6.4 5.3 5.3 5.0 4.3 5.1 5.3 4.9 4.9 5.1 6.3 5.1 5.2 4.9 5.3 6.3 5.3 5.2 5.1 5.4 6.7 5.5 5.9 5.6 6.3 7.4 6.4
TGMAPQ >= 30 1.1 6.5 5.7 8.0 5.4 5.3 4.8 6.4 7.3 6.6 6.8 6.9 7.0 7.1 7.0 7.1 7.0 7.1 7.1 7.2 7.1 7.2 7.2 7.2 7.2 7.2 7.2 7.2 7.2 7.3 7.2 7.2 7.2 7.2 7.2 7.1 7.2 7.2 7.2 7.2 7.1 7.1 7.1 7.1 7.1 7.2 7.1 7.2 7.1 7.1 7.2 6.3 6.1 7.2 7.1 7.2 7.2 7.1 7.1 7.1 7.1 7.2 7.1 7.1 7.1 7.1 7.1 7.2 7.2 7.1 7.1 7.1 7.1 7.0
TGMAPQ >= 20 1.1 6.7 6.1 8.0 5.5 5.2 5.0 6.4 7.2 6.5 6.5 6.8 7.1 7.1 6.7 7.0 7.2 7.1 7.1 7.3 7.1 7.4 7.4 7.4 7.3 7.5 7.3 7.6 7.5 7.6 7.3 7.0 7.6 7.1 7.2 7.2 7.2 7.4 7.3 7.3 7.0 7.2 7.4 7.1 7.2 7.2 7.2 7.5 7.3 7.2 7.2 6.5 6.0 7.5 7.0 7.5 7.1 7.3 7.1 7.1 6.9 7.4 7.0 7.1 6.8 6.9 6.6 6.8 6.9 6.8 6.7 6.7 6.7 6.4
TGMAPQ >= 10 1.4 8.0 7.4 9.1 6.4 5.6 5.5 7.7 8.1 7.0 6.8 7.8 8.3 8.2 7.1 7.6 8.3 7.6 7.8 7.8 7.6 8.2 8.5 7.8 7.9 8.1 8.0 8.3 8.2 8.4 7.7 7.3 8.3 7.7 7.9 7.4 7.8 8.0 8.0 8.0 7.3 7.7 8.3 7.8 7.7 7.9 8.0 8.6 7.9 7.5 7.9 7.3 7.1 8.7 7.5 8.3 7.4 7.7 7.8 7.3 7.1 8.2 7.5 7.8 7.5 7.4 7.2 8.0 8.4 7.8 7.6 7.6 7.8 7.7
TGMAPQ >= 3 1.5 8.5 6.7 8.7 7.1 6.3 5.4 8.1 8.4 6.7 7.4 7.5 7.6 8.0 7.1 7.3 7.7 7.7 7.7 7.8 7.8 7.6 8.5 7.6 8.1 7.9 7.9 7.7 8.5 7.8 7.8 7.6 7.4 7.9 8.2 7.4 8.0 8.5 7.8 8.6 8.0 8.0 7.9 8.1 7.9 7.5 8.6 8.2 7.6 7.6 7.7 6.9 7.0 8.8 7.6 8.2 7.6 7.7 7.8 7.8 7.2 8.3 8.0 8.2 8.1 7.5 7.8 8.5 8.8 7.7 7.8 7.8 7.8 8.2
TGMAPQ < 3 1.3 7.5 6.9 9.0 5.9 5.5 5.4 7.1 7.7 7.0 6.9 7.6 7.8 7.6 7.2 7.2 7.8 7.4 7.4 8.0 7.4 7.9 8.1 7.7 7.9 8.0 7.6 7.9 7.9 7.8 7.3 7.2 8.0 7.4 7.5 7.4 7.6 7.8 7.6 7.8 7.2 7.5 8.1 7.5 7.6 7.7 7.6 8.3 7.6 7.5 7.7 7.0 6.8 8.0 7.2 8.1 7.2 7.7 7.5 7.4 7.3 7.8 7.5 7.6 7.5 7.6 7.3 7.7 7.9 7.5 7.5 7.5 7.5 7.5
TGUnmapped 0.8 6.1 5.7 7.3 4.9 4.6 4.6 6.1 6.7 5.8 5.8 6.1 6.5 6.5 6.0 6.1 6.4 7.2 6.7 6.8 6.1 6.7 7.1 6.9 6.5 6.5 6.8 7.2 6.8 6.6 6.2 6.5 7.2 6.5 6.3 6.0 6.5 6.8 6.6 6.4 6.0 6.6 6.7 6.6 6.2 6.2 6.5 6.9 6.6 6.4 6.3 5.8 5.6 6.8 6.2 6.4 6.3 6.9 6.2 6.3 5.7 6.3 6.3 6.0 5.8 5.4 5.8 6.1 5.7 5.6 4.9 5.4 5.7 5.1
TTMAPQ >= 30 1.6 11.4 9.0 8.1 6.7 8.9 12.5 14.0 13.3 12.2 12.3 12.3 12.0 11.6 11.1 10.8 10.6 10.3 10.2 10.0 10.0 9.8 9.8 9.7 9.7 9.7 9.6 9.6 9.6 9.5 9.4 9.5 9.5 9.5 9.5 9.5 9.4 9.4 9.5 9.4 9.4 9.5 9.5 9.5 9.5 9.4 9.4 9.4 9.4 9.4 9.4 8.0 8.0 9.4 9.4 9.4 9.3 9.3 9.3 9.3 9.3 9.3 9.3 9.3 9.4 9.4 9.4 9.5 9.5 9.5 9.6 9.6 9.6 9.7
TTMAPQ >= 20 1.6 11.9 9.1 8.2 6.8 8.8 12.7 13.2 12.2 11.5 11.6 12.5 11.8 11.3 11.1 10.7 10.8 10.3 10.0 10.0 9.8 9.9 10.0 9.3 9.6 9.1 9.3 9.5 9.2 9.3 9.1 9.5 9.6 9.3 9.4 9.2 9.5 9.5 9.2 9.0 9.2 9.2 9.4 9.2 9.2 9.5 9.4 9.2 9.1 8.8 9.5 7.7 7.5 9.0 8.8 9.3 9.3 9.0 9.0 9.1 9.4 9.7 9.3 9.5 9.7 10.2 10.8 10.3 10.4 10.3 10.4 11.0 10.6 10.9
TTMAPQ >= 10 1.7 12.0 8.1 7.3 6.2 7.8 12.6 12.2 10.6 9.9 10.2 11.6 10.1 9.2 9.3 8.7 9.4 8.8 8.3 8.4 8.5 8.5 8.7 7.9 8.4 7.4 7.9 8.2 7.9 8.3 7.9 8.7 8.9 8.9 8.9 8.2 8.1 8.5 8.2 7.7 7.8 8.2 8.7 7.9 8.0 8.6 8.5 8.0 7.8 7.7 8.9 7.4 7.0 8.0 7.7 8.4 8.2 7.9 7.9 7.6 8.1 8.7 7.8 7.9 7.7 8.1 8.6 7.9 8.3 8.0 8.1 9.1 8.3 8.8
TTMAPQ >= 3 1.7 10.9 8.1 7.9 6.7 8.0 11.2 11.5 10.7 9.4 10.0 10.8 10.2 10.0 9.7 8.9 9.1 8.6 9.1 8.1 8.6 8.8 8.3 8.3 7.8 7.9 8.0 7.8 8.1 7.6 7.7 8.5 8.5 8.4 7.8 8.0 8.5 8.4 8.8 7.8 7.8 8.6 8.7 7.9 7.7 8.1 8.8 7.8 7.8 8.0 8.3 7.2 6.8 8.2 7.6 8.0 8.1 7.9 8.0 7.5 7.8 8.5 8.0 7.7 7.4 7.5 8.4 8.0 8.1 7.8 7.7 8.6 8.4 8.1
TTMAPQ < 3 1.5 12.1 8.5 7.5 6.4 8.4 13.0 13.1 11.7 10.9 10.9 12.2 10.9 10.0 9.8 9.4 10.0 9.7 9.2 9.3 9.2 9.2 9.7 8.6 9.0 8.3 8.5 9.0 8.5 8.8 8.6 9.2 9.5 9.2 9.3 9.0 9.1 9.3 9.0 8.6 9.0 8.9 9.2 9.0 8.7 9.6 9.3 8.8 8.7 8.6 9.5 7.9 7.5 8.8 8.5 9.2 9.1 8.8 8.7 8.6 9.0 9.4 8.6 8.8 8.4 8.8 9.3 8.5 8.9 8.6 8.8 9.6 9.0 9.5
TTUnmapped 1.6 12.4 9.1 8.7 7.0 9.3 13.6 13.6 12.7 11.8 12.1 13.6 12.5 12.4 12.0 11.9 12.7 11.4 11.0 10.4 10.5 11.5 11.0 10.4 10.3 10.1 11.1 10.0 9.7 9.6 9.6 11.0 10.0 9.9 9.7 9.7 10.8 9.8 9.7 9.3 9.5 10.6 9.7 9.8 9.6 10.2 11.1 10.2 9.9 9.6 9.8 8.8 7.9 9.5 9.5 10.0 11.0 10.2 10.1 9.9 10.3 11.5 10.4 10.4 10.3 10.7 11.9 10.6 10.3 9.8 10.1 11.1 9.7 9.5
Percentage of 2-mers at each position of the read for each alignment quality interval. Numbers shown in bold corresponds to p-values of <= 1e-100.

Error Distribution

MAPQ >= 30 MAPQ >= 20 MAPQ >= 10 MAPQ >= 3 MAPQ < 3

Nucleotide Composition MAPQ >= 30

A C G T N

Nucleotide Composition MAPQ >= 20

A C G T N

Nucleotide Composition MAPQ >= 10

A C G T N

Nucleotide Composition MAPQ >= 3

A C G T N

Nucleotide Composition MAPQ < 3

A C G T N

Nucleotide Composition Unmapped

A C G T N

Length Distribution MAPQ >= 30

Length Distribution MAPQ >= 20

Length Distribution MAPQ >= 10

Length Distribution MAPQ >= 3

Length Distribution MAPQ < 3

Length Distribution Unmapped

Top 5 over-represented 2-mers MAPQ >= 30

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
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TT

AT

CA

TA

AA

TT

AT

TA

CA

AA

TT

AT

TA

CA

AA

TT

AT

TA

AG

AA

TT

AT

TA

CA

AA

TT

AT

CA

TA

AA

TT

AT

TA

CA

AA

TT

AT

AG

CA

AA

TT

AT

CA

TA

AA

TT

AT

AG

TA

AA

TT

AT

CA

AG

AA

TT

AT

AG

TA

AA

TT

AT

TA

AG

AA

TT

AT

AG

TA

AA

TT

AT

TA

AG

AA

TT

AT

AG

TA

AA

TT

AT

TA

AG

AA

TT

AT

TA

AG

AA

TT

AT

TA

AG

AA

TT

AT

TA

AG

AA

TT

AT

TA

CA

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ >= 20

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

AT

AA

AG

AC

GT

TA

TT

AA

AT

GA

AT

AA

TA

TT

AG

TA

AA

AT

TT

TG

AA

AT

GA

TA

AG

AA

AT

TT

CA

GA

AA

TT

AT

TA

TC

TT

AA

AT

TC

TA

TT

AA

AT

TA

CA

AA

TT

AT

TA

CA

AA

TT

AT

TA

CA

TT

AA

AT

TA

TG

AA

TT

AT

TA

TG

AA

TT

AT

TA

TG

AA

TT

AT

TA

CA

AA

TT

AT

TA

TG

AA

TT

AT

TA

TG

AA

TT

AT

TA

TG

AA

TT

AT

TA

CA

AA

TT

AT

TG

TA

AA

TT

AT

TA

TG

AA

TT

AT

TG

TA

AA

TT

AT

TG

CA

AA

AT

TT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

AT

TT

TG

GA

AA

TT

AT

TG

AG

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

AT

TT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

AT

TT

CA

TG

AA

TT

AT

CA

TG

AA

TA

TT

CA

GA

AA

AT

TT

AG

TG

AA

TT

AT

CA

TG

AA

AT

TT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

GA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

TT

AT

CA

GA

AA

TT

AT

TG

CA

AA

TT

AT

CA

GA

AA

TT

AT

TA

CA

AA

TT

AT

CA

TA

AA

TT

AT

TA

CA

AA

TT

AT

TA

CA

TT

AA

AT

TA

CA

TT

AA

AT

TA

CA

TT

AA

AT

TA

CA

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ >= 10

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

AT

AA

AG

GA

GG

TT

TA

AA

AT

GA

AT

AA

TT

TC

TG

TA

TG

AT

CA

AA

AA

GA

AT

CA

TC

AT

AA

CA

GA

TT

TT

AA

AT

TC

GA

TT

TC

AA

AT

TG

TT

AT

AA

TG

TC

AA

TT

CA

AT

GA

AT

AA

TT

CA

TC

TT

AT

AA

TG

CA

TT

AA

TC

AT

TG

TT

AA

AT

TG

CA

TT

AA

CA

AT

GA

AA

AT

TT

TG

CA

TT

AT

AA

TG

GA

AA

TT

AT

TG

CA

AT

AA

TT

CA

TG

AA

AT

TT

CA

TG

AA

AT

TT

CA

TG

AT

AA

TT

TG

CA

AA

TT

TG

CA

AT

AT

AA

TT

CA

TG

AA

TT

CA

TG

AT

AA

AT

TG

CA

TT

AT

AA

GA

TG

TT

AA

AT

TG

TT

CA

AT

AA

TG

CA

TT

AA

TG

TT

AT

CA

AA

AT

CA

TT

TG

AT

AA

TT

CA

TG

AA

AT

TT

TG

CA

AA

TT

AT

TC

TG

TT

AA

CA

AT

TG

AA

CA

AT

TT

TC

AA

AT

CA

TT

TG

AA

AT

TT

TG

CA

AA

AT

TT

TG

CA

AA

AT

TG

TT

CA

AA

AT

TT

CA

GA

AA

AT

TT

TG

CA

AA

TT

TG

AT

CA

AA

AT

CA

TT

TG

AT

AA

CA

TT

TG

AA

AT

TT

TG

CA

AT

AA

TT

TG

CA

AA

TG

TT

AT

CA

AA

GA

CA

AT

TG

AA

AT

CA

TT

TG

AA

AT

TT

TG

CA

AA

CA

GA

TT

TG

AT

AA

AG

TG

TT

AA

TG

CA

TT

AT

AT

AA

CA

TT

TG

AA

AT

TT

TG

CA

AA

AT

TT

CA

GA

AA

AT

CA

TT

TG

AA

AT

CA

GA

TT

AA

AT

CA

TT

GA

AA

AT

TT

CA

GA

AA

TT

CA

TG

AT

AA

AT

TT

CA

TG

AA

CA

AT

TT

TG

AA

AT

CA

TT

TG

AA

AT

TT

CA

TG

AA

TT

AT

CA

GA

AA

AT

TG

TT

CA

AA

TG

TT

AT

CA

AA

AT

TT

TG

CA

AA

AT

TT

CA

GA

AA

TT

AT

CA

TG

AA

AT

TT

TG

CA

AA

TT

AT

TG

CA

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ >= 3

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

AT

AA

AG

AC

GT

TA

TT

AA

AT

GA

AT

AA

TT

TA

TG

TA

TG

AA

CA

AT

AA

AT

GA

AG

CA

AA

AT

CA

TT

CT

AA

TT

AT

TC

CT

TT

AA

AT

CA

TG

TT

AA

TG

CA

AT

AA

TT

CA

AT

TG

AA

TT

AT

TG

CA

TT

AA

AT

CA

TG

TT

AA

AT

TG

CA

TT

AA

TG

CA

AT

TT

AA

CA

TG

AT

AA

TT

CA

AT

TG

AA

TT

TG

AT

CA

TT

AA

CA

TG

AG

TT

AA

CA

TG

AT

AA

TT

CA

TG

AT

AA

TT

CA

AT

TG

AA

TT

CA

TG

AT

AA

TG

TT

CA

AG

AA

CA

TT

TG

AT

AA

CA

TG

TT

CT

CA

AA

TT

TG

AT

AA

CA

TT

TG

AG

AA

AT

CA

TT

TG

CA

TG

AA

TT

AT

AA

CA

TG

TT

AG

CA

AA

AT

TG

TT

AA

TT

CA

TG

AT

AA

TT

CA

AT

TG

AA

TT

TG

CA

AT

AA

CA

TG

TT

AT

AA

CA

TT

AT

TG

AA

CA

TT

TG

AT

AA

TG

TT

AT

CA

AA

TT

CA

TG

AT

AA

TG

CA

TT

AT

AA

CA

TG

AT

TT

AA

TT

TG

CA

CT

AA

TT

CA

TG

TC

AA

TG

TT

CA

CT

CA

AA

TG

TT

AT

AA

TT

AT

TG

CA

AA

TT

TG

CA

AT

AA

TG

CA

TT

AT

AA

CA

TT

AT

TG

AA

CA

TT

AT

TG

AA

TT

CA

AT

TG

AA

CA

TT

GA

TG

AA

AT

AG

TG

TT

AA

TG

TT

CA

AG

AA

CA

AT

TT

TG

AA

TG

CA

TT

AT

AA

CA

TT

AT

TG

AA

AT

TT

CA

TG

AA

TT

TG

CA

AT

AA

CA

TG

TT

AT

AA

AT

TT

CA

TG

AA

TT

TG

CA

AT

AA

TT

TG

CA

AT

AA

TG

CA

AT

TT

AA

CA

TG

TT

AT

AA

CA

AT

TT

TG

AA

CA

TT

TG

AT

AA

AT

TG

TT

CA

AA

TG

CA

TT

AT

AA

TT

CA

TG

AT

AA

AT

TG

TT

CA

AA

TT

CA

TG

AT

AA

TT

CA

TG

AT

AA

TG

TT

CA

AT

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers MAPQ < 3

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

AT

AA

AG

AC

GT

TA

TT

AA

AT

GA

AT

AA

TT

TA

TC

TA

AT

AA

TG

CA

AA

GA

AT

CA

AG

AT

AA

CA

TT

GA

TT

AA

AT

TC

TA

TT

AA

AT

TC

CA

TT

AA

AT

CA

TG

AA

TT

AT

CA

GA

AT

AA

TT

CA

TG

TT

AA

AT

TG

CA

TT

AA

AT

TG

TC

AA

TT

AT

TG

CA

AA

TT

AT

CA

GA

AA

AT

TT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AT

AA

TT

CA

TG

AA

TT

AT

TG

CA

AA

AT

TT

CA

TG

AA

AT

TT

TG

CA

AA

TT

AT

TG

CA

AA

AT

TT

TG

CA

AA

TT

AT

TG

CA

AA

AT

TT

CA

TG

AA

AT

TT

GA

CA

AA

TT

AT

TG

CA

AA

AT

TT

TG

CA

AA

AT

TT

TG

CA

AA

AT

TT

CA

TG

AA

AT

TT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

TC

CA

AA

TT

AT

CA

TG

AA

TT

AT

CA

TG

AA

AT

TT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

AT

TT

TG

CA

AA

AT

TT

CA

GA

AA

AT

TT

CA

TG

AA

TT

AT

TG

CA

AA

TT

AT

CA

TG

AA

AT

TT

CA

TG

AA

TT

AT

TG

CA

AA

AT

TT

TG

CA

AA

TT

AT

TG

CA

AA

TT

AT

CA

GA

AA

AT

TT

CA

TG

AA

AT

TT

TG

CA

AA

TT

CA

AT

GA

AA

AT

TT

TG

AG

AA

TT

AT

CA

TG

AA

AT

TT

CA

TG

AA

AT

TT

TG

CA

AA

TT

AT

CA

GA

AA

AT

TT

CA

TG

AA

AT

TT

CA

TG

AA

AT

TT

CA

TG

AA

AT

TT

CA

TG

AA

TT

AT

CA

TG

AA

AT

TT

CA

TG

AA

TT

AT

CA

TG

AA

AT

TT

CA

TG

AA

AT

TT

TG

CA

AA

TT

AT

CA

GA

AA

AT

TT

TG

CA

AA

AT

TT

TG

CA

AA

AT

TT

CA

TG

AA

AT

TT

CA

TG

AA

TT

AT

CA

GA

AA

AT

TT

CA

TG

AA

TT

AT

TG

CA

 
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 5 over-represented 2-mers Unmapped

Pos1234567891011121314151617181920212223242526272829303132333435363738394041424344454647484950515253545556575859606162636465666768697071727374
Seq

AT

AA

AG

AC

GT

TA

AA

TT

AT

GA

AT

AA

TA

TT

AG

TA

AA

AT

TT

TG

AA

AT

TA

GA

CA

AA

AT

TT

TA

CA

AA

TT

AT

TA

TC

TT

AA

AT

TA

TC

TT

AA

AT

TA

CA

AA

TT

AT

TA

CA

AA

AT

TT

TA

CA

AA

TT

AT

TA

CA

AA

TT

AT

TA

TC

AA

TT

AT

TA

TG

AA

TT

AT

TA

CA

AA

TT

AT

TA

CA

AA

TT

AT

TA

TG

AA

TT

AT

TA

TG

AA

TT

AT

TA

TG

AA

TT

AT

TA

CA

AA

AT

TT

TA

CA

AA

TT

AT

TA

TG

AA

TT

AT

TA

TG

AA

TT

AT

TA

TG

AA

TT

AT

TA

CA

AA

AT

TT

TA

GA

AA

TT

AT

TA

TG

AA

TT

AT

TA

TG

AA

AT

TT

TA

GA

AA

TT

AT

TA

CA

AA

AT

TT

TA

GA

AA

TT

AT

TA

CA

AA

TT

AT

TA

TG

AA

TT

AT

TA

GA

AA

TT

AT

TA

CA

AA

AT

TT

TA

GA

AA

TT

AT

TA

CA

AA

TT

AT

TA

TG

AA

TT

AT

TA

GA

AA

TT

AT

TA

CA

AA

AT

TT

TA

GA

AA

TT

AT

TA

CA

AA

AT

TT

TA

TG

AA

TT

AT

TA

CA

AA

AT

TT

CA

GA

AA

TT

AT

TA

CA

AA

TT

AT

TA

AG

AA

TT

AT

TA

TG

AA

TT

AT

TA

GA

AA

TT

AT

CA

GA

AA

AT

TT

TA

AG

AA

TT

AT

TA

TG

AA

TT

AT

TA

TG

AA

TT

AT

TA

GA

AA

TT

AT

CA

TA

AA

AT

TT

TA

GA

AA

TT

AT

TA

GA

AA

TT

AT

TA

TG

AA

TT

AT

TA

GA

AA

TT

AT

TA

GA

AA

AT

TT

TA

GA

TT

AA

AT

TA

GA

AA

TT

AT

TA

GA

AA

TT

AT

TA

GA

AA

TT

AT

TA

GA

AT

AA

TT

TA

GA

TT

AA

AT

TA

GA

TT

AA

AT

TA

GA

TT

AT

AA

TA

GA

AA

TT

AT

TA

GA

AT

TT

AA

TA

GA

TT

AT

AA

TA

GA

AT

TT

AA

AG

TA

AT

TT

GA

AA

AG

 
Top 5 enriched 2-mers at each positon withion reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.

Top 20 over-represented 10-mers

MAPQ >= 30 MAPQ >= 20 MAPQ >= 10 MAPQ >= 3 MAPQ < 3 Unmapped
SeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-valueSeqenceCountP-value
CTGTAATCCC 136280 0.0e+00 AAAAAAAAAA 38727 0.0e+00 GATTCCATTC 23296 0.0e+00 ATTCCATTCC 3740 0.0e+00 GAATGGAATC 117325 0.0e+00 TTTTTTTTTT 583943 0.0e+00
TAATCCCAGC 135292 0.0e+00 ATTCCATTCC 38402 0.0e+00 GAATGGAATC 23193 0.0e+00 CCATTCCATT 3650 0.0e+00 GATTCCATTC 109898 0.0e+00 AAAAAAAAAA 541520 0.0e+00
AATAAATAAA 111429 0.0e+00 TTCCATTCCA 36322 0.0e+00 AATGGAATCA 19901 0.0e+00 CATTCCATTC 3588 0.0e+00 AATGGAATCA 99998 0.0e+00 ATTCCATTCC 430696 0.0e+00
AAAATAAAAA 109456 0.0e+00 GAATGGAATC 35892 0.0e+00 TGATTCCATT 19454 0.0e+00 TTCCATTCCA 3588 0.0e+00 TGATTCCATT 95351 0.0e+00 TTCCATTCCA 413646 0.0e+00
GAAAAAAAAA 103125 0.0e+00 GATTCCATTC 35029 0.0e+00 ATTCCATTCC 19043 0.0e+00 TCCATTCCAT 3581 0.0e+00 ATTCCATTCG 94507 0.0e+00 CCATTCCATT 405600 0.0e+00
AGAAAAAAAA 101223 0.0e+00 TCCATTCCAT 34952 0.0e+00 ATCGAATGGA 17922 0.0e+00 AATGGAATGG 2631 0.0e+00 CGAATGGAAT 93436 0.0e+00 AATGGAATGG 402284 0.0e+00
GCCTGTAATC 100684 0.0e+00 CCATTCCATT 34950 0.0e+00 TTCCATTCCA 17726 0.0e+00 GAATGGAATG 2594 0.0e+00 TCGAATGGAA 89263 0.0e+00 TCCATTCCAT 401857 0.0e+00
AAGAAAGAAA 92098 0.0e+00 AATGGAATCA 34330 0.0e+00 ATTCCATTCG 17707 0.0e+00 ATGGAATGGA 2563 0.0e+00 TTCCATTCGA 87564 0.0e+00 ATGGAATGGA 399612 0.0e+00
TTAAAAAAAA 91750 0.0e+00 GGAATGGAAT 32996 0.0e+00 TCCATTCGAT 17540 0.0e+00 GGAATGGAAT 2558 0.0e+00 ATTCCATTCC 87049 0.0e+00 GGAATGGAAT 398020 0.0e+00
TTTGGGAGGC 91715 0.0e+00 TGATTCCATT 32694 0.0e+00 TCCATTCCAT 17008 0.0e+00 TGGAATGGAA 2526 0.0e+00 ATCGAATGGA 87027 0.0e+00 TGGAATGGAA 397295 0.0e+00
AAAAAATAAA 90792 0.0e+00 TGGAATGGAA 32292 0.0e+00 ATGGAATCAT 16821 0.0e+00 CTCCTGACCT 1930 0.0e+00 TTCCATTCCA 84710 0.0e+00 CATTCCATTC 393158 0.0e+00
CTTTGGGAGG 89430 0.0e+00 ATGGAATGGA 31850 0.0e+00 CCATTCCATT 16763 0.0e+00 TCCTGACCTC 1725 0.0e+00 ATGGAATCAT 84164 0.0e+00 GAATGGAATG 383372 0.0e+00
TTTTAAAAAT 88894 0.0e+00 AATGGAATGG 31748 0.0e+00 GGAATGGAAT 16653 0.0e+00 GGAGGCTGAG 1557 0.0e+00 TCCATTCCAT 82397 0.0e+00 AGATCGGAAG 364984 0.0e+00
TTTTTTAAAA 88164 0.0e+00 CATTCCATTC 31430 0.0e+00 ATGATTCCAT 16598 0.0e+00 GAGGCTGAGG 1553 0.0e+00 CCATTCCATT 81484 0.0e+00 GATCGGAAGA 338523 0.0e+00
AGCACTTTGG 87751 0.0e+00 ATTCCATTCG 30091 0.0e+00 TTCCATTCGA 16330 0.0e+00 AGGCAGGAGA 1535 0.0e+00 TCCATTCGAT 80931 0.0e+00 ATCGGAAGAG 314567 0.0e+00
ATAAATAAAT 87667 0.0e+00 GAATGGAATG 28768 0.0e+00 TGGAATGGAA 16221 0.0e+00 AGGCTGAGGC 1530 0.0e+00 ATGATTCCAT 80201 0.0e+00 TAGATCGGAA 303377 0.0e+00
TCCCAGCTAC 86878 0.0e+00 ATCGAATGGA 28485 0.0e+00 ATGGAATGGA 16195 0.0e+00 GGCAGGAGAA 1511 0.0e+00 ATGGAATGGA 79710 0.0e+00 TCGGAAGAGC 290928 0.0e+00
GGGAGGCTGA 86728 0.0e+00 TCCATTCGAT 28363 0.0e+00 AATGGAATGG 15882 0.0e+00 GGCTGAGGCA 1465 0.0e+00 TGGAATGGAA 79671 0.0e+00 CGGAAGAGCG 272469 0.0e+00
AAAATACAAA 86346 0.0e+00 CGAATGGAAT 27850 0.0e+00 CGAATGGAAT 15775 0.0e+00 GCTGAGGCAG 1448 0.0e+00 AATGGAATGG 78540 0.0e+00 GGAAGAGCGG 257862 0.0e+00
TGGGATTACA 86135 0.0e+00 TTCCATTCGA 27726 0.0e+00 TCGAATGGAA 15604 0.0e+00 CTGAGGCAGG 1434 0.0e+00 GGAATGGAAT 78523 0.0e+00 GAAGAGCGGT 239636 0.0e+00