Number of alignments in various mapping quality (MAPQ) intervals and number of unmapped sequences. The percentage and number of alignments in each category is given in brackets.
Mean base quality of reads with low and high mapping quality.
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mismatches | Insertions | Deletions |
| Mer | Q | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| AA | MAPQ >= 30 | 10.6 | 10.9 | 10.3 | 9.3 | 9.4 | 9.4 | 9.4 | 9.2 | 9.2 | 9.3 | 9.3 | 9.2 | 9.2 | 9.1 | 9.0 | 9.0 | 8.8 | 8.8 | 8.7 | 8.7 | 8.7 | 8.7 | 8.8 | 8.8 | 8.8 | 8.8 | 8.7 | 8.7 | 8.7 | 8.6 | 8.6 | 8.6 | 8.7 | 8.7 | 8.7 | 8.7 | 8.7 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.5 | 8.5 | 8.5 | 9.3 | 9.4 | 8.6 | 8.6 | 8.6 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 |
| AA | MAPQ >= 20 | 9.4 | 10.2 | 9.7 | 8.2 | 8.3 | 8.3 | 8.3 | 8.1 | 8.1 | 8.3 | 8.3 | 8.2 | 8.1 | 8.0 | 8.2 | 8.2 | 7.7 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.7 | 7.7 | 7.8 | 7.7 | 7.7 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.7 | 7.7 | 7.7 | 7.6 | 7.6 | 7.6 | 7.7 | 7.6 | 7.5 | 7.6 | 7.6 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 9.0 | 9.0 | 7.8 | 7.8 | 7.9 | 7.8 | 7.9 | 7.9 | 7.9 | 8.0 | 8.0 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 | 8.0 |
| AA | MAPQ >= 10 | 9.0 | 9.4 | 8.9 | 7.9 | 8.0 | 7.9 | 7.9 | 7.7 | 7.8 | 8.0 | 8.0 | 7.9 | 7.8 | 7.6 | 7.5 | 7.6 | 7.6 | 7.4 | 7.4 | 7.4 | 7.3 | 7.4 | 7.4 | 7.4 | 7.6 | 7.4 | 7.4 | 7.4 | 7.3 | 7.4 | 7.3 | 7.3 | 7.4 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.4 | 7.5 | 7.4 | 7.4 | 7.5 | 7.5 | 7.6 | 7.7 | 7.7 | 7.6 | 7.7 | 7.8 | 7.8 | 8.4 | 8.6 | 7.8 | 7.8 | 7.9 | 7.9 | 7.9 | 7.9 | 7.9 | 7.9 | 8.1 | 8.1 | 8.2 | 8.1 | 8.1 | 8.2 | 8.1 | 8.1 | 8.1 | 8.2 | 8.3 | 8.2 |
| AA | MAPQ >= 3 | 9.8 | 10.2 | 9.6 | 8.6 | 8.7 | 8.7 | 8.8 | 8.6 | 8.8 | 8.9 | 9.0 | 8.7 | 8.5 | 8.4 | 8.5 | 8.5 | 8.4 | 8.1 | 8.0 | 8.0 | 8.0 | 8.1 | 8.0 | 8.0 | 8.2 | 8.0 | 8.1 | 8.0 | 8.0 | 8.2 | 8.1 | 8.2 | 8.3 | 8.3 | 8.4 | 8.4 | 8.4 | 8.3 | 8.3 | 8.1 | 8.2 | 8.2 | 8.0 | 8.1 | 8.3 | 8.5 | 8.5 | 8.6 | 8.3 | 8.4 | 8.4 | 8.3 | 9.2 | 9.3 | 8.6 | 8.5 | 8.6 | 8.5 | 8.4 | 8.4 | 8.4 | 8.6 | 8.6 | 8.5 | 8.5 | 8.5 | 8.6 | 8.8 | 8.8 | 8.8 | 8.7 | 8.6 | 8.8 | 8.8 |
| AA | MAPQ < 3 | 9.7 | 11.2 | 10.6 | 8.6 | 8.7 | 8.7 | 8.7 | 8.5 | 8.5 | 8.7 | 8.7 | 8.6 | 8.6 | 8.4 | 8.4 | 8.4 | 8.2 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.2 | 8.3 | 8.2 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.2 | 8.1 | 8.2 | 8.2 | 8.2 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.2 | 8.3 | 8.2 | 8.2 | 8.2 | 8.2 | 8.2 | 8.3 | 10.0 | 10.1 | 8.3 | 8.3 | 8.3 | 8.3 | 8.2 | 8.2 | 8.2 | 8.3 | 8.4 | 8.4 | 8.4 | 8.4 | 8.4 | 8.4 | 8.4 | 8.4 | 8.3 | 8.4 | 8.4 | 8.4 |
| AA | Unmapped | 9.7 | 7.5 | 7.1 | 8.4 | 8.7 | 8.9 | 11.2 | 8.7 | 8.6 | 9.0 | 9.2 | 9.2 | 9.2 | 9.0 | 9.2 | 9.3 | 9.1 | 9.1 | 8.9 | 9.1 | 9.1 | 9.2 | 9.1 | 11.2 | 9.1 | 9.0 | 9.0 | 8.9 | 8.8 | 8.9 | 9.0 | 9.0 | 9.0 | 8.8 | 8.9 | 8.9 | 8.9 | 8.8 | 8.7 | 8.7 | 8.8 | 8.8 | 8.6 | 8.4 | 8.5 | 8.5 | 8.5 | 8.4 | 8.2 | 8.2 | 8.2 | 8.3 | 6.4 | 6.3 | 8.1 | 8.2 | 8.2 | 8.0 | 7.9 | 7.9 | 8.0 | 8.0 | 7.9 | 7.9 | 7.9 | 8.1 | 10.2 | 10.2 | 10.1 | 10.1 | 10.1 | 9.9 | 9.6 | 9.3 |
| AC | MAPQ >= 30 | 5.3 | 4.3 | 5.7 | 4.9 | 5.1 | 5.0 | 5.1 | 4.9 | 4.9 | 5.0 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 4.3 | 6.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 |
| AC | MAPQ >= 20 | 5.3 | 3.8 | 6.2 | 4.9 | 5.2 | 5.0 | 5.2 | 4.9 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.5 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.0 | 5.1 | 5.1 | 5.2 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 5.1 | 5.0 | 5.1 | 5.1 | 5.0 | 5.1 | 3.9 | 6.5 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.3 | 5.1 | 5.0 | 5.1 | 5.0 |
| AC | MAPQ >= 10 | 5.2 | 4.1 | 5.7 | 4.8 | 5.1 | 4.9 | 5.2 | 4.8 | 5.0 | 4.9 | 5.1 | 5.0 | 5.0 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.2 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 | 5.0 | 5.1 | 5.2 | 5.2 | 5.1 | 5.2 | 4.4 | 6.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.3 | 5.3 | 5.5 | 5.4 | 5.3 | 5.3 | 5.3 | 5.2 | 5.2 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.2 | 5.2 |
| AC | MAPQ >= 3 | 5.1 | 4.1 | 5.8 | 4.9 | 5.0 | 5.0 | 5.2 | 4.8 | 5.0 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.0 | 5.3 | 5.1 | 5.2 | 5.0 | 5.1 | 5.3 | 5.1 | 5.1 | 5.2 | 5.3 | 5.2 | 5.3 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.0 | 4.9 | 5.1 | 5.0 | 5.1 | 5.0 | 5.1 | 5.1 | 5.2 | 4.2 | 6.0 | 4.9 | 4.9 | 5.0 | 5.2 | 5.2 | 5.2 | 5.3 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.2 |
| AC | MAPQ < 3 | 5.3 | 4.2 | 6.5 | 4.9 | 5.1 | 5.0 | 5.2 | 5.0 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 4.4 | 6.9 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 |
| AC | Unmapped | 5.5 | 4.0 | 4.0 | 4.9 | 5.1 | 4.9 | 5.1 | 4.8 | 4.8 | 4.8 | 4.9 | 4.8 | 4.8 | 4.7 | 4.7 | 4.9 | 4.8 | 4.7 | 4.8 | 4.6 | 4.8 | 4.6 | 4.7 | 4.6 | 4.7 | 4.6 | 4.6 | 4.6 | 4.7 | 4.6 | 4.7 | 4.6 | 6.8 | 4.6 | 4.6 | 4.5 | 4.6 | 4.5 | 4.6 | 4.7 | 4.6 | 4.5 | 4.6 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.6 | 4.6 | 4.6 | 4.5 | 3.7 | 3.6 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.6 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.6 | 4.5 | 4.6 | 4.6 | 4.6 |
| AG | MAPQ >= 30 | 8.6 | 6.5 | 7.8 | 7.5 | 7.5 | 7.4 | 7.1 | 7.1 | 7.1 | 7.2 | 7.3 | 7.2 | 7.2 | 7.2 | 7.3 | 7.3 | 7.3 | 7.4 | 7.4 | 7.3 | 7.3 | 7.3 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.4 | 6.4 | 8.0 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 |
| AG | MAPQ >= 20 | 8.8 | 5.9 | 8.2 | 7.5 | 7.4 | 7.3 | 7.1 | 7.1 | 7.1 | 7.2 | 7.3 | 7.1 | 7.2 | 7.2 | 7.3 | 7.4 | 7.2 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.5 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 | 7.4 | 7.5 | 7.3 | 7.3 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.3 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.5 | 7.4 | 7.3 | 5.7 | 8.4 | 7.4 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.2 | 7.2 | 7.3 | 7.2 | 7.3 | 7.3 | 7.4 | 7.6 | 7.5 | 7.4 | 7.4 | 7.4 | 7.5 |
| AG | MAPQ >= 10 | 8.6 | 6.4 | 7.8 | 7.4 | 7.3 | 7.1 | 7.0 | 7.0 | 7.1 | 7.2 | 7.2 | 7.1 | 7.2 | 7.1 | 7.2 | 7.1 | 7.2 | 7.4 | 7.3 | 7.3 | 7.3 | 7.1 | 7.5 | 7.3 | 7.5 | 7.3 | 7.3 | 7.4 | 7.3 | 7.5 | 7.3 | 7.3 | 7.4 | 7.2 | 7.2 | 7.3 | 7.2 | 7.1 | 7.3 | 7.3 | 7.3 | 7.3 | 7.1 | 7.3 | 7.2 | 7.4 | 7.3 | 7.3 | 7.4 | 7.4 | 7.3 | 7.2 | 6.2 | 7.9 | 7.3 | 7.3 | 7.3 | 7.4 | 7.2 | 7.3 | 7.3 | 7.3 | 7.2 | 7.3 | 7.2 | 7.3 | 7.3 | 7.5 | 7.5 | 7.3 | 7.4 | 7.5 | 7.4 | 7.4 |
| AG | MAPQ >= 3 | 8.2 | 6.1 | 7.4 | 7.1 | 7.0 | 6.9 | 6.9 | 6.8 | 7.0 | 7.0 | 7.1 | 7.1 | 7.1 | 7.1 | 7.2 | 7.2 | 7.1 | 7.3 | 7.2 | 7.3 | 7.2 | 7.2 | 7.3 | 7.3 | 7.0 | 7.0 | 7.1 | 7.2 | 7.0 | 7.1 | 7.1 | 7.2 | 7.2 | 7.1 | 6.9 | 7.0 | 7.1 | 6.8 | 6.9 | 7.0 | 6.8 | 6.8 | 6.6 | 6.9 | 6.9 | 7.1 | 6.9 | 7.1 | 7.2 | 7.1 | 7.0 | 7.0 | 6.0 | 7.8 | 7.3 | 7.2 | 6.9 | 7.1 | 7.0 | 7.1 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 6.9 | 6.9 | 7.0 | 7.2 | 7.1 | 7.2 | 7.1 | 7.0 | 6.8 |
| AG | MAPQ < 3 | 8.4 | 6.3 | 8.5 | 7.3 | 7.3 | 7.1 | 6.9 | 6.9 | 7.0 | 7.0 | 7.1 | 7.0 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.2 | 7.1 | 7.1 | 7.1 | 7.1 | 7.2 | 7.2 | 7.1 | 7.1 | 7.1 | 7.2 | 7.1 | 7.2 | 7.1 | 7.1 | 7.2 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.0 | 7.1 | 7.1 | 7.2 | 7.1 | 7.2 | 7.2 | 7.2 | 7.2 | 7.1 | 6.1 | 8.6 | 7.2 | 7.1 | 7.2 | 7.2 | 7.1 | 7.2 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.1 |
| AG | Unmapped | 7.9 | 5.5 | 5.4 | 6.7 | 6.7 | 6.5 | 6.4 | 8.5 | 6.3 | 8.6 | 6.4 | 6.3 | 6.4 | 6.2 | 6.5 | 6.3 | 6.4 | 8.5 | 6.4 | 6.2 | 8.6 | 6.2 | 6.4 | 6.2 | 6.4 | 6.4 | 6.5 | 6.4 | 6.5 | 6.4 | 8.8 | 6.4 | 6.6 | 6.3 | 6.5 | 6.4 | 6.4 | 6.3 | 6.4 | 6.2 | 6.4 | 6.2 | 6.3 | 6.2 | 6.3 | 6.2 | 6.3 | 6.2 | 6.4 | 6.4 | 6.5 | 6.3 | 5.2 | 5.0 | 6.4 | 6.4 | 6.4 | 6.3 | 6.4 | 6.3 | 6.4 | 6.4 | 6.5 | 6.4 | 6.5 | 6.4 | 6.4 | 6.4 | 6.6 | 6.5 | 6.4 | 6.4 | 6.5 | 6.4 |
| AT | MAPQ >= 30 | 8.6 | 6.3 | 8.8 | 7.4 | 7.5 | 7.4 | 7.6 | 7.4 | 7.2 | 7.2 | 7.2 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 7.0 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.8 | 6.9 | 6.9 | 6.9 | 6.9 | 6.9 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 5.8 | 7.9 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.7 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.7 | 6.8 | 6.7 | 6.7 | 6.7 | 6.7 |
| AT | MAPQ >= 20 | 7.9 | 5.1 | 8.7 | 6.8 | 6.8 | 6.7 | 6.9 | 6.6 | 6.4 | 6.4 | 6.5 | 6.5 | 6.5 | 6.5 | 6.0 | 6.9 | 6.4 | 6.3 | 6.3 | 6.3 | 6.2 | 6.3 | 6.2 | 6.3 | 6.3 | 6.3 | 6.2 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.1 | 6.2 | 6.2 | 6.2 | 6.1 | 6.2 | 6.1 | 6.2 | 6.1 | 6.2 | 6.1 | 6.0 | 6.1 | 6.2 | 6.1 | 6.2 | 4.7 | 7.7 | 6.2 | 6.1 | 6.1 | 6.1 | 6.0 | 6.0 | 6.1 | 6.0 | 6.1 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 5.7 | 6.3 | 6.0 | 6.0 | 6.1 | 6.0 |
| AT | MAPQ >= 10 | 7.6 | 5.7 | 8.1 | 6.6 | 6.7 | 6.6 | 6.8 | 6.5 | 6.2 | 6.3 | 6.4 | 6.5 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.2 | 6.3 | 6.1 | 6.2 | 6.2 | 6.3 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.1 | 6.1 | 6.2 | 6.1 | 6.2 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.3 | 6.1 | 6.2 | 6.2 | 6.3 | 6.2 | 6.2 | 5.3 | 7.1 | 6.3 | 6.2 | 6.1 | 6.2 | 6.1 | 6.1 | 6.1 | 6.0 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 5.9 | 6.0 | 6.1 | 6.1 | 6.1 | 6.1 |
| AT | MAPQ >= 3 | 8.4 | 6.2 | 8.7 | 7.2 | 7.3 | 7.1 | 7.3 | 7.0 | 6.8 | 6.9 | 7.0 | 6.9 | 6.9 | 6.8 | 6.6 | 6.8 | 6.7 | 6.6 | 6.6 | 6.7 | 6.6 | 6.6 | 6.7 | 6.8 | 6.7 | 6.8 | 6.5 | 6.6 | 6.6 | 6.5 | 6.8 | 6.6 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.9 | 7.0 | 7.0 | 6.7 | 6.9 | 6.7 | 6.7 | 6.6 | 6.8 | 6.7 | 6.5 | 6.8 | 6.7 | 6.7 | 6.7 | 5.7 | 7.6 | 6.6 | 6.6 | 6.6 | 6.8 | 6.7 | 6.5 | 6.8 | 6.8 | 6.8 | 6.8 | 6.8 | 6.6 | 6.6 | 6.8 | 6.6 | 6.8 | 6.8 | 6.7 | 6.8 | 6.8 |
| AT | MAPQ < 3 | 8.2 | 6.0 | 9.6 | 7.1 | 7.2 | 7.1 | 7.3 | 7.1 | 6.8 | 6.8 | 6.9 | 6.9 | 6.8 | 6.8 | 6.7 | 6.9 | 6.7 | 6.7 | 6.7 | 6.8 | 6.7 | 6.7 | 6.7 | 6.8 | 6.7 | 6.8 | 6.7 | 6.7 | 6.7 | 6.6 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.6 | 6.6 | 6.7 | 6.7 | 6.6 | 6.6 | 6.7 | 6.7 | 6.7 | 5.6 | 8.6 | 6.7 | 6.7 | 6.6 | 6.7 | 6.6 | 6.6 | 6.6 | 6.6 | 6.6 | 6.6 | 6.6 | 6.6 | 6.5 | 6.6 | 6.5 | 6.6 | 6.6 | 6.6 | 6.6 | 6.6 |
| AT | Unmapped | 8.2 | 7.6 | 5.9 | 6.9 | 6.8 | 6.9 | 7.0 | 6.8 | 6.4 | 6.3 | 6.6 | 6.5 | 6.4 | 6.3 | 6.0 | 6.5 | 6.3 | 6.2 | 6.1 | 5.9 | 6.1 | 6.1 | 6.0 | 5.9 | 8.0 | 6.0 | 6.0 | 5.9 | 5.8 | 5.7 | 5.9 | 6.0 | 5.9 | 5.7 | 5.6 | 5.8 | 6.1 | 5.7 | 7.6 | 5.5 | 5.7 | 5.7 | 7.9 | 5.5 | 5.5 | 5.6 | 5.7 | 5.5 | 5.5 | 7.7 | 5.7 | 5.7 | 4.5 | 4.4 | 5.4 | 5.7 | 5.7 | 5.6 | 5.5 | 5.4 | 5.7 | 5.6 | 5.7 | 5.6 | 5.5 | 5.7 | 5.8 | 5.8 | 5.5 | 5.7 | 5.8 | 5.9 | 5.9 | 5.7 |
| CA | MAPQ >= 30 | 8.2 | 7.1 | 6.1 | 7.3 | 7.0 | 7.4 | 7.1 | 7.4 | 7.5 | 7.4 | 7.4 | 7.5 | 7.4 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.5 | 7.6 | 7.5 | 7.6 | 7.5 | 7.6 | 7.5 | 7.5 | 7.5 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 8.1 | 6.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 |
| CA | MAPQ >= 20 | 8.2 | 7.4 | 5.5 | 7.3 | 7.1 | 7.5 | 7.1 | 7.6 | 7.6 | 7.7 | 7.5 | 7.6 | 7.6 | 7.6 | 7.8 | 7.4 | 7.6 | 7.6 | 7.6 | 7.7 | 7.6 | 7.7 | 7.6 | 7.7 | 7.6 | 7.6 | 7.7 | 7.7 | 7.7 | 7.8 | 7.7 | 7.8 | 7.7 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.6 | 7.6 | 7.6 | 7.6 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 8.6 | 5.9 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.7 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.5 | 7.6 | 7.6 | 7.6 | 7.4 | 7.6 | 7.6 | 7.6 | 7.6 |
| CA | MAPQ >= 10 | 8.2 | 7.1 | 6.2 | 7.5 | 7.1 | 7.5 | 7.1 | 7.7 | 7.6 | 7.7 | 7.6 | 7.6 | 7.6 | 7.5 | 7.7 | 7.6 | 7.7 | 7.6 | 7.7 | 7.8 | 7.6 | 7.8 | 7.7 | 7.8 | 7.7 | 7.7 | 7.8 | 7.9 | 7.9 | 7.9 | 7.9 | 8.0 | 7.9 | 7.7 | 7.9 | 7.9 | 7.8 | 7.9 | 7.8 | 7.8 | 7.7 | 7.7 | 7.9 | 7.7 | 7.9 | 7.8 | 7.8 | 7.8 | 7.9 | 7.7 | 7.8 | 7.7 | 8.5 | 6.7 | 7.6 | 7.8 | 7.8 | 7.8 | 7.8 | 7.9 | 7.8 | 7.9 | 7.8 | 7.8 | 7.6 | 7.7 | 7.8 | 7.8 | 7.8 | 7.7 | 7.8 | 7.8 | 7.7 | 7.8 |
| CA | MAPQ >= 3 | 8.2 | 7.2 | 6.1 | 7.5 | 7.2 | 7.6 | 7.1 | 7.8 | 7.7 | 7.8 | 7.6 | 7.7 | 7.7 | 7.5 | 7.7 | 7.3 | 7.5 | 7.5 | 7.7 | 7.7 | 7.6 | 7.7 | 7.6 | 7.7 | 7.5 | 7.6 | 7.8 | 7.8 | 7.8 | 7.9 | 7.9 | 8.0 | 7.8 | 7.8 | 7.9 | 7.8 | 7.8 | 7.7 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.4 | 7.8 | 7.6 | 7.6 | 7.6 | 7.7 | 7.5 | 7.6 | 7.6 | 8.3 | 6.4 | 7.5 | 7.4 | 7.5 | 7.4 | 7.5 | 7.5 | 7.6 | 7.7 | 7.5 | 7.5 | 7.3 | 7.6 | 7.7 | 7.7 | 7.7 | 7.6 | 7.4 | 7.6 | 7.5 | 7.5 |
| CA | MAPQ < 3 | 8.4 | 7.9 | 6.2 | 7.5 | 7.2 | 7.6 | 7.2 | 7.6 | 7.7 | 7.7 | 7.6 | 7.6 | 7.6 | 7.5 | 7.7 | 7.6 | 7.6 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.8 | 7.8 | 7.9 | 7.8 | 7.8 | 7.7 | 7.8 | 7.7 | 7.8 | 7.7 | 7.7 | 7.8 | 7.7 | 7.7 | 7.8 | 7.7 | 7.8 | 7.7 | 7.7 | 7.7 | 7.8 | 7.7 | 7.7 | 7.7 | 9.1 | 6.6 | 7.7 | 7.6 | 7.7 | 7.7 | 7.7 | 7.8 | 7.7 | 7.7 | 7.7 | 7.7 | 7.6 | 7.7 | 7.8 | 7.6 | 7.7 | 7.6 | 7.6 | 7.7 | 7.7 | 7.7 |
| CA | Unmapped | 7.7 | 5.0 | 5.3 | 6.9 | 6.8 | 7.0 | 6.5 | 6.8 | 6.9 | 7.0 | 6.8 | 6.8 | 6.6 | 6.6 | 6.8 | 6.6 | 8.8 | 6.6 | 6.5 | 9.0 | 6.6 | 6.5 | 6.4 | 6.5 | 6.5 | 6.5 | 6.4 | 6.4 | 6.3 | 6.6 | 6.5 | 6.5 | 6.3 | 6.4 | 6.4 | 6.5 | 6.3 | 6.3 | 6.4 | 6.5 | 6.3 | 6.3 | 6.2 | 6.3 | 6.4 | 6.4 | 6.2 | 6.3 | 6.4 | 6.6 | 6.5 | 6.4 | 5.0 | 5.1 | 6.4 | 6.4 | 6.3 | 6.2 | 6.3 | 6.5 | 6.4 | 6.4 | 6.3 | 6.4 | 6.5 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.4 | 6.3 | 6.3 | 6.4 |
| CC | MAPQ >= 30 | 5.3 | 4.1 | 4.3 | 4.9 | 5.1 | 5.3 | 5.4 | 5.5 | 5.4 | 5.4 | 5.5 | 5.6 | 5.7 | 5.8 | 5.7 | 5.7 | 5.8 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.8 | 5.8 | 5.8 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.1 | 5.0 | 5.9 | 5.9 | 5.9 | 5.9 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 |
| CC | MAPQ >= 20 | 5.7 | 4.1 | 4.3 | 5.4 | 5.6 | 5.9 | 6.0 | 6.1 | 6.0 | 6.1 | 6.1 | 6.1 | 6.1 | 6.4 | 6.1 | 6.2 | 6.5 | 6.6 | 6.6 | 6.5 | 6.5 | 6.6 | 6.6 | 6.5 | 6.5 | 6.5 | 6.6 | 6.6 | 6.6 | 6.6 | 6.5 | 6.5 | 6.5 | 6.6 | 6.6 | 6.5 | 6.6 | 6.5 | 6.5 | 6.5 | 6.5 | 6.6 | 6.6 | 6.6 | 6.6 | 6.6 | 6.5 | 6.6 | 6.6 | 6.6 | 6.6 | 6.5 | 5.1 | 5.1 | 6.5 | 6.6 | 6.6 | 6.6 | 6.7 | 6.8 | 6.7 | 6.8 | 6.9 | 6.8 | 6.8 | 6.9 | 6.9 | 7.0 | 6.7 | 6.7 | 7.0 | 7.1 | 7.1 | 7.1 |
| CC | MAPQ >= 10 | 5.8 | 4.6 | 4.7 | 5.3 | 5.5 | 5.8 | 5.9 | 6.1 | 6.0 | 6.1 | 6.0 | 6.0 | 6.1 | 6.4 | 6.3 | 6.3 | 6.5 | 6.7 | 6.7 | 6.5 | 6.6 | 6.8 | 6.7 | 6.5 | 6.6 | 6.6 | 6.8 | 6.8 | 6.7 | 6.8 | 6.7 | 6.6 | 6.6 | 6.7 | 6.7 | 6.6 | 6.8 | 6.7 | 6.7 | 6.6 | 6.7 | 6.7 | 6.7 | 6.8 | 6.9 | 6.9 | 6.7 | 6.7 | 6.8 | 6.8 | 6.8 | 6.7 | 5.7 | 5.7 | 6.7 | 6.7 | 6.8 | 6.7 | 6.9 | 7.0 | 6.8 | 6.9 | 7.0 | 7.0 | 6.9 | 7.0 | 7.1 | 7.1 | 7.0 | 7.0 | 7.1 | 7.2 | 7.2 | 7.3 |
| CC | MAPQ >= 3 | 5.4 | 4.2 | 4.3 | 5.1 | 5.2 | 5.4 | 5.5 | 5.9 | 5.9 | 5.9 | 5.9 | 5.7 | 5.7 | 6.1 | 5.8 | 6.0 | 6.2 | 6.4 | 6.3 | 6.2 | 6.1 | 6.2 | 6.0 | 6.0 | 6.0 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.0 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.1 | 6.3 | 6.4 | 6.3 | 6.7 | 6.7 | 6.7 | 6.7 | 6.7 | 6.6 | 6.6 | 6.7 | 6.6 | 5.5 | 5.4 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.4 | 6.2 | 6.2 | 6.2 | 6.2 | 6.3 | 6.5 | 6.5 | 6.4 | 6.3 | 6.3 | 6.5 | 6.6 | 6.8 | 6.9 |
| CC | MAPQ < 3 | 5.7 | 4.4 | 4.6 | 5.3 | 5.5 | 5.7 | 5.8 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 6.0 | 6.1 | 6.1 | 6.1 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.2 | 6.2 | 6.2 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.2 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.4 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.3 | 6.3 | 6.3 | 5.4 | 5.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.5 | 6.5 | 6.6 | 6.6 |
| CC | Unmapped | 5.2 | 4.0 | 4.2 | 5.2 | 5.4 | 5.4 | 5.4 | 5.5 | 5.6 | 5.5 | 5.5 | 5.4 | 5.4 | 5.7 | 5.5 | 5.4 | 5.5 | 5.6 | 5.7 | 5.7 | 5.6 | 5.6 | 5.5 | 5.7 | 5.7 | 5.6 | 5.6 | 7.9 | 5.8 | 5.8 | 5.7 | 5.7 | 5.8 | 8.2 | 6.1 | 6.0 | 6.1 | 6.2 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.7 | 6.8 | 6.8 | 6.9 | 7.1 | 7.2 | 7.2 | 7.2 | 7.2 | 7.7 | 5.9 | 7.2 | 7.2 | 7.1 | 7.1 | 7.3 | 7.3 | 7.2 | 7.2 | 7.2 | 7.3 | 7.2 | 7.2 | 7.1 | 7.1 | 7.1 | 7.1 | 7.2 | 7.1 | 7.2 | 7.3 |
| CG | MAPQ >= 30 | 1.0 | 0.6 | 0.8 | 1.0 | 0.9 | 1.0 | 0.9 | 1.0 | 1.1 | 1.0 | 1.0 | 1.0 | 1.0 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.0 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.0 | 1.0 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 | 1.1 |
| CG | MAPQ >= 20 | 1.4 | 1.0 | 1.1 | 1.5 | 1.5 | 1.7 | 1.5 | 1.7 | 1.7 | 1.6 | 1.6 | 1.6 | 1.6 | 1.7 | 2.1 | 1.9 | 1.6 | 1.6 | 1.6 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.8 | 1.7 | 1.7 | 1.7 | 1.8 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.8 | 1.7 | 1.7 | 1.4 | 1.4 | 1.7 | 1.8 | 1.7 | 1.8 | 1.8 | 1.7 | 1.7 | 1.8 | 1.8 | 1.7 | 1.7 | 1.7 | 1.7 | 1.8 | 2.3 | 2.0 | 1.8 | 1.8 | 1.7 | 1.8 |
| CG | MAPQ >= 10 | 1.6 | 1.1 | 1.3 | 1.7 | 1.6 | 1.8 | 1.6 | 1.9 | 1.8 | 1.7 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.9 | 1.8 | 1.8 | 1.8 | 1.9 | 1.8 | 1.9 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.9 | 1.8 | 1.7 | 1.8 | 1.9 | 1.8 | 1.9 | 1.9 | 1.9 | 1.8 | 1.8 | 1.9 | 1.9 | 1.9 | 1.9 | 1.9 | 1.8 | 1.8 | 1.9 | 1.8 | 1.8 | 1.6 | 1.6 | 1.9 | 1.9 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.8 | 1.9 | 1.9 | 1.8 | 1.9 | 1.8 | 1.8 |
| CG | MAPQ >= 3 | 1.4 | 1.0 | 1.1 | 1.4 | 1.4 | 1.6 | 1.4 | 1.7 | 1.5 | 1.4 | 1.6 | 1.6 | 1.5 | 1.6 | 1.6 | 1.7 | 1.5 | 1.6 | 1.6 | 1.7 | 1.7 | 1.8 | 1.7 | 1.7 | 1.6 | 1.6 | 1.6 | 1.6 | 1.7 | 1.7 | 1.7 | 1.7 | 1.6 | 1.5 | 1.6 | 1.7 | 1.6 | 1.7 | 1.7 | 1.7 | 1.5 | 1.6 | 1.6 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.6 | 1.6 | 1.7 | 1.7 | 1.5 | 1.5 | 1.7 | 1.7 | 1.6 | 1.6 | 1.7 | 1.6 | 1.7 | 1.6 | 1.6 | 1.6 | 1.5 | 1.5 | 1.6 | 1.6 | 1.6 | 1.7 | 1.6 | 1.7 | 1.5 | 1.6 |
| CG | MAPQ < 3 | 1.5 | 1.0 | 1.2 | 1.5 | 1.5 | 1.6 | 1.5 | 1.7 | 1.7 | 1.6 | 1.6 | 1.7 | 1.6 | 1.6 | 1.7 | 1.7 | 1.6 | 1.6 | 1.6 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.6 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.5 | 1.5 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 | 1.8 | 1.7 | 1.7 | 1.7 | 1.7 | 1.7 |
| CG | Unmapped | 2.2 | 1.5 | 1.7 | 4.6 | 2.2 | 2.5 | 2.2 | 2.5 | 2.5 | 2.4 | 2.4 | 4.7 | 2.4 | 2.5 | 2.7 | 2.5 | 2.4 | 2.5 | 2.5 | 2.5 | 2.5 | 2.5 | 2.5 | 2.5 | 2.5 | 2.6 | 2.5 | 2.6 | 4.8 | 2.6 | 2.6 | 2.6 | 2.6 | 2.6 | 4.8 | 2.7 | 4.6 | 2.6 | 2.7 | 2.7 | 2.8 | 2.6 | 2.6 | 2.7 | 2.7 | 2.7 | 4.9 | 2.7 | 2.8 | 2.8 | 2.8 | 2.8 | 2.4 | 4.3 | 2.9 | 2.9 | 2.9 | 2.9 | 2.9 | 3.0 | 2.9 | 2.9 | 3.0 | 2.9 | 3.0 | 3.0 | 3.0 | 3.0 | 3.2 | 3.1 | 3.0 | 3.0 | 3.1 | 3.1 |
| CT | MAPQ >= 30 | 8.0 | 5.9 | 6.0 | 7.1 | 6.9 | 7.1 | 7.2 | 7.4 | 7.2 | 7.2 | 7.3 | 7.4 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.4 | 7.4 | 7.5 | 7.5 | 7.5 | 6.4 | 6.4 | 7.5 | 7.4 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.5 | 7.4 |
| CT | MAPQ >= 20 | 8.0 | 5.3 | 5.5 | 7.1 | 6.9 | 7.2 | 7.3 | 7.4 | 7.2 | 7.2 | 7.2 | 7.5 | 7.4 | 7.4 | 7.1 | 7.2 | 7.4 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.3 | 7.3 | 7.4 | 7.4 | 7.5 | 7.3 | 7.4 | 7.4 | 7.4 | 7.3 | 7.4 | 7.5 | 7.5 | 7.6 | 7.4 | 7.4 | 7.5 | 7.4 | 7.4 | 7.5 | 7.5 | 7.5 | 5.8 | 5.7 | 7.4 | 7.4 | 7.5 | 7.5 | 7.4 | 7.5 | 7.5 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.4 | 7.0 | 7.0 | 7.2 | 7.2 | 7.2 | 7.2 |
| CT | MAPQ >= 10 | 7.9 | 5.9 | 6.1 | 7.1 | 6.8 | 7.2 | 7.2 | 7.4 | 7.0 | 7.2 | 7.2 | 7.6 | 7.4 | 7.3 | 7.6 | 7.5 | 7.3 | 7.5 | 7.5 | 7.3 | 7.5 | 7.4 | 7.3 | 7.2 | 7.3 | 7.2 | 7.3 | 7.3 | 7.2 | 7.3 | 7.2 | 7.2 | 7.5 | 7.3 | 7.4 | 7.3 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.5 | 7.5 | 7.6 | 7.3 | 7.4 | 7.6 | 7.4 | 7.3 | 7.6 | 7.6 | 7.6 | 6.5 | 6.3 | 7.5 | 7.5 | 7.6 | 7.6 | 7.5 | 7.6 | 7.7 | 7.7 | 7.5 | 7.6 | 7.6 | 7.5 | 7.4 | 7.4 | 7.4 | 7.2 | 7.3 | 7.2 | 7.2 | 7.1 |
| CT | MAPQ >= 3 | 7.6 | 5.6 | 5.9 | 6.9 | 6.6 | 6.8 | 6.8 | 6.9 | 6.7 | 6.9 | 6.9 | 7.2 | 7.1 | 7.0 | 7.2 | 7.1 | 7.1 | 7.2 | 7.2 | 7.0 | 7.2 | 7.1 | 7.1 | 6.9 | 7.1 | 7.0 | 7.1 | 7.0 | 6.8 | 6.8 | 6.8 | 6.8 | 6.9 | 6.8 | 7.1 | 6.9 | 7.0 | 7.1 | 7.1 | 7.1 | 7.1 | 7.4 | 7.4 | 7.4 | 7.1 | 7.1 | 7.1 | 7.1 | 7.2 | 7.2 | 7.3 | 7.5 | 6.3 | 6.1 | 7.3 | 7.3 | 7.3 | 7.5 | 7.4 | 7.5 | 7.5 | 7.4 | 7.3 | 7.3 | 7.3 | 7.2 | 7.2 | 7.3 | 7.1 | 7.0 | 6.9 | 6.9 | 7.0 | 7.0 |
| CT | MAPQ < 3 | 7.7 | 5.7 | 5.8 | 6.9 | 6.7 | 7.0 | 7.0 | 7.2 | 7.0 | 7.0 | 7.0 | 7.2 | 7.1 | 7.1 | 7.2 | 7.1 | 7.1 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.2 | 7.1 | 7.2 | 7.1 | 7.2 | 7.1 | 7.1 | 7.2 | 7.2 | 7.2 | 7.1 | 7.1 | 7.2 | 7.2 | 7.2 | 7.2 | 7.3 | 7.3 | 6.2 | 6.1 | 7.3 | 7.2 | 7.3 | 7.2 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.2 | 7.2 | 7.2 | 7.2 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 |
| CT | Unmapped | 7.5 | 5.2 | 5.4 | 6.7 | 6.6 | 6.8 | 6.9 | 6.9 | 6.7 | 6.6 | 6.7 | 6.6 | 6.6 | 6.5 | 6.3 | 6.3 | 6.4 | 6.4 | 6.4 | 6.3 | 6.4 | 6.3 | 6.2 | 6.2 | 6.2 | 6.1 | 6.1 | 6.1 | 6.1 | 6.0 | 6.0 | 6.0 | 6.1 | 6.0 | 6.0 | 6.0 | 6.1 | 6.0 | 6.1 | 6.1 | 6.1 | 6.1 | 6.2 | 6.2 | 8.3 | 6.1 | 6.1 | 6.0 | 6.1 | 6.1 | 6.1 | 6.1 | 4.9 | 4.8 | 6.1 | 6.0 | 8.3 | 6.0 | 6.0 | 8.2 | 6.0 | 6.0 | 8.3 | 6.0 | 6.0 | 5.9 | 6.0 | 5.9 | 5.9 | 5.8 | 5.9 | 5.9 | 6.0 | 6.0 |
| GA | MAPQ >= 30 | 6.0 | 7.1 | 5.4 | 6.4 | 6.4 | 6.4 | 6.2 | 5.8 | 6.1 | 6.1 | 6.1 | 6.0 | 6.0 | 6.0 | 6.0 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.9 | 5.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 |
| GA | MAPQ >= 20 | 6.1 | 7.7 | 5.0 | 6.5 | 6.5 | 6.5 | 6.3 | 5.9 | 6.2 | 6.2 | 6.2 | 6.1 | 6.1 | 6.1 | 6.4 | 6.3 | 6.2 | 6.1 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.3 | 6.3 | 6.1 | 6.3 | 6.2 | 6.3 | 6.2 | 6.3 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.3 | 6.4 | 6.4 | 6.4 | 6.3 | 6.3 | 7.6 | 5.0 | 6.4 | 6.4 | 6.4 | 6.3 | 6.4 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.2 | 6.3 | 6.2 | 6.5 | 6.7 | 6.4 | 6.4 | 6.4 | 6.4 |
| GA | MAPQ >= 10 | 6.0 | 7.3 | 5.4 | 6.4 | 6.3 | 6.5 | 6.3 | 5.9 | 6.3 | 6.2 | 6.1 | 6.1 | 6.0 | 6.1 | 6.0 | 6.1 | 6.2 | 6.1 | 6.2 | 6.1 | 6.1 | 6.3 | 6.3 | 6.4 | 6.3 | 6.2 | 6.3 | 6.3 | 6.4 | 6.2 | 6.3 | 6.4 | 6.4 | 6.3 | 6.4 | 6.3 | 6.2 | 6.3 | 6.3 | 6.5 | 6.5 | 6.2 | 6.4 | 6.3 | 6.4 | 6.4 | 6.4 | 6.5 | 6.6 | 6.5 | 6.3 | 6.4 | 7.1 | 5.6 | 6.5 | 6.5 | 6.6 | 6.4 | 6.5 | 6.5 | 6.4 | 6.4 | 6.5 | 6.4 | 6.5 | 6.3 | 6.6 | 6.2 | 6.3 | 6.5 | 6.5 | 6.6 | 6.6 | 6.4 |
| GA | MAPQ >= 3 | 5.9 | 7.0 | 5.0 | 6.0 | 6.0 | 6.2 | 6.0 | 5.7 | 6.1 | 6.1 | 6.0 | 5.9 | 5.9 | 6.0 | 6.0 | 6.2 | 6.2 | 6.1 | 6.3 | 6.2 | 6.3 | 6.4 | 6.4 | 6.4 | 6.4 | 6.2 | 6.3 | 6.3 | 6.4 | 6.4 | 6.4 | 6.5 | 6.4 | 6.2 | 6.3 | 6.2 | 6.1 | 6.4 | 6.4 | 6.3 | 6.3 | 6.1 | 6.2 | 6.2 | 6.3 | 6.3 | 6.4 | 6.3 | 6.6 | 6.3 | 6.2 | 6.3 | 7.0 | 5.4 | 6.4 | 6.3 | 6.6 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.4 | 6.4 | 6.3 | 6.1 | 6.2 | 6.1 | 6.2 | 6.5 | 6.4 | 6.6 | 6.4 | 6.2 |
| GA | MAPQ < 3 | 6.2 | 8.1 | 5.5 | 6.6 | 6.5 | 6.5 | 6.5 | 6.0 | 6.3 | 6.3 | 6.3 | 6.2 | 6.2 | 6.2 | 6.3 | 6.3 | 6.4 | 6.3 | 6.4 | 6.3 | 6.3 | 6.4 | 6.4 | 6.4 | 6.4 | 6.3 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.4 | 6.4 | 6.5 | 6.5 | 6.4 | 6.4 | 6.4 | 6.5 | 6.5 | 6.4 | 6.4 | 6.5 | 6.5 | 6.4 | 6.4 | 7.9 | 5.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.4 | 6.5 | 6.5 | 6.4 | 6.5 | 6.4 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.5 | 6.5 | 6.5 | 6.5 | 6.4 |
| GA | Unmapped | 8.7 | 5.5 | 5.1 | 6.6 | 6.5 | 8.9 | 6.4 | 5.9 | 8.4 | 6.4 | 6.2 | 6.3 | 6.0 | 6.2 | 6.2 | 6.4 | 6.1 | 6.1 | 6.0 | 6.3 | 6.1 | 6.2 | 8.2 | 6.2 | 6.2 | 6.4 | 6.3 | 6.3 | 6.3 | 8.8 | 6.4 | 8.7 | 6.2 | 6.4 | 6.3 | 6.6 | 6.2 | 8.2 | 6.1 | 6.3 | 6.2 | 6.4 | 6.0 | 6.2 | 6.2 | 6.3 | 6.0 | 6.1 | 6.2 | 6.3 | 6.2 | 6.3 | 4.8 | 5.0 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.4 | 6.3 | 6.3 | 6.2 | 6.4 | 6.4 | 8.6 | 6.4 | 6.3 | 6.5 | 6.6 | 6.4 | 6.4 | 6.3 | 6.5 |
| GC | MAPQ >= 30 | 4.1 | 3.6 | 3.7 | 4.2 | 4.5 | 4.4 | 4.6 | 4.4 | 4.5 | 4.6 | 4.6 | 4.6 | 4.7 | 4.6 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.8 | 4.8 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.9 | 4.9 | 4.9 | 4.9 | 4.1 | 4.1 | 4.8 | 4.8 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.8 | 4.9 | 4.9 | 4.9 | 4.9 | 4.8 |
| GC | MAPQ >= 20 | 4.5 | 3.6 | 3.8 | 4.7 | 5.1 | 4.9 | 5.2 | 4.9 | 5.0 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.4 | 5.3 | 5.3 | 5.3 | 5.4 | 5.4 | 5.3 | 5.3 | 5.4 | 5.3 | 5.4 | 5.3 | 5.4 | 5.4 | 5.4 | 5.5 | 5.5 | 5.3 | 5.4 | 5.3 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.5 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.5 | 4.1 | 4.1 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.4 | 5.3 | 5.3 | 5.3 | 5.3 | 5.4 | 5.3 | 5.6 | 5.3 | 5.3 | 5.3 | 5.2 |
| GC | MAPQ >= 10 | 4.8 | 4.1 | 4.3 | 4.8 | 5.2 | 4.9 | 5.3 | 4.9 | 5.0 | 5.1 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.3 | 5.4 | 5.3 | 5.4 | 5.4 | 5.5 | 5.4 | 5.3 | 5.4 | 5.3 | 5.5 | 5.4 | 5.4 | 5.5 | 5.5 | 5.7 | 5.7 | 5.4 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.4 | 5.4 | 5.5 | 5.5 | 5.6 | 5.5 | 5.5 | 5.4 | 5.4 | 5.4 | 5.5 | 5.3 | 5.5 | 4.6 | 4.5 | 5.5 | 5.5 | 5.4 | 5.4 | 5.5 | 5.4 | 5.5 | 5.5 | 5.5 | 5.3 | 5.4 | 5.4 | 5.5 | 5.6 | 5.4 | 5.6 | 5.6 | 5.4 | 5.5 | 5.4 |
| GC | MAPQ >= 3 | 4.6 | 3.7 | 4.0 | 4.4 | 4.8 | 4.6 | 5.1 | 4.7 | 4.7 | 4.8 | 4.8 | 4.8 | 4.9 | 4.9 | 4.8 | 4.9 | 4.9 | 4.8 | 4.8 | 4.9 | 5.0 | 5.0 | 5.0 | 5.0 | 4.8 | 4.8 | 4.7 | 4.8 | 4.8 | 4.9 | 4.9 | 4.9 | 4.7 | 4.9 | 4.8 | 4.8 | 4.9 | 4.9 | 5.0 | 5.0 | 4.9 | 5.0 | 4.9 | 5.0 | 4.9 | 4.8 | 4.7 | 4.9 | 4.9 | 5.0 | 4.9 | 5.0 | 4.1 | 4.1 | 5.0 | 5.0 | 5.0 | 4.9 | 5.0 | 4.9 | 5.1 | 5.0 | 5.1 | 4.9 | 5.1 | 5.1 | 5.3 | 5.2 | 5.1 | 5.2 | 5.1 | 5.2 | 5.0 | 5.1 |
| GC | MAPQ < 3 | 4.4 | 3.8 | 3.9 | 4.5 | 4.8 | 4.6 | 4.9 | 4.6 | 4.7 | 4.8 | 4.8 | 4.8 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 4.9 | 4.9 | 4.9 | 5.0 | 4.9 | 5.0 | 5.1 | 5.1 | 5.0 | 5.0 | 4.9 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 4.9 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 4.2 | 4.2 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.0 | 5.0 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.0 | 5.0 |
| GC | Unmapped | 4.0 | 3.3 | 3.4 | 4.3 | 4.6 | 4.3 | 4.6 | 4.4 | 4.5 | 4.5 | 6.8 | 4.5 | 4.5 | 4.5 | 4.5 | 4.6 | 4.5 | 4.5 | 6.8 | 4.6 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 6.7 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 6.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.6 | 4.6 | 4.6 | 4.5 | 4.6 | 4.6 | 4.7 | 4.7 | 4.8 | 7.0 | 3.8 | 3.8 | 4.8 | 4.8 | 4.8 | 4.7 | 4.8 | 4.8 | 4.9 | 7.0 | 4.8 | 4.8 | 4.8 | 4.9 | 4.9 | 4.8 | 4.8 | 4.9 | 4.8 | 4.8 | 4.8 | 4.8 |
| GG | MAPQ >= 30 | 5.7 | 4.8 | 4.9 | 5.5 | 5.6 | 5.7 | 5.5 | 5.2 | 5.4 | 5.5 | 5.5 | 5.5 | 5.5 | 5.6 | 5.6 | 5.7 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 5.9 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 5.9 | 6.0 | 5.9 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 5.1 | 5.1 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.1 | 6.0 | 6.0 | 6.0 | 6.0 | 6.0 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 | 6.1 |
| GG | MAPQ >= 20 | 6.6 | 5.1 | 5.2 | 6.3 | 6.4 | 6.6 | 6.2 | 6.0 | 6.3 | 6.4 | 6.3 | 6.2 | 6.2 | 6.3 | 6.5 | 6.5 | 6.5 | 6.6 | 6.7 | 6.7 | 6.7 | 6.6 | 6.7 | 6.8 | 6.7 | 6.9 | 6.8 | 6.9 | 6.9 | 7.0 | 7.1 | 6.9 | 7.0 | 7.1 | 7.0 | 7.0 | 7.1 | 7.0 | 7.1 | 7.2 | 7.2 | 7.1 | 7.0 | 6.9 | 7.0 | 7.0 | 7.1 | 7.1 | 7.0 | 7.0 | 7.1 | 7.0 | 5.4 | 5.5 | 7.0 | 7.1 | 7.0 | 7.0 | 7.1 | 7.1 | 7.1 | 7.0 | 7.0 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.1 | 7.2 | 7.2 | 7.2 | 7.2 | 7.2 |
| GG | MAPQ >= 10 | 7.0 | 5.9 | 5.8 | 6.4 | 6.6 | 6.9 | 6.4 | 6.1 | 6.5 | 6.7 | 6.6 | 6.3 | 6.3 | 6.4 | 6.6 | 6.5 | 6.5 | 6.7 | 6.8 | 6.8 | 6.9 | 6.7 | 6.7 | 7.0 | 6.9 | 7.0 | 6.8 | 7.0 | 7.0 | 7.1 | 7.2 | 6.9 | 7.0 | 7.1 | 6.8 | 6.8 | 7.1 | 7.0 | 6.9 | 7.0 | 7.0 | 6.9 | 6.9 | 6.7 | 6.9 | 6.7 | 6.9 | 6.9 | 6.8 | 6.6 | 6.8 | 6.7 | 5.8 | 5.7 | 6.7 | 6.7 | 6.5 | 6.6 | 6.7 | 6.6 | 6.7 | 6.5 | 6.4 | 6.5 | 6.5 | 6.6 | 6.5 | 6.5 | 6.7 | 6.7 | 6.6 | 6.7 | 6.6 | 6.8 |
| GG | MAPQ >= 3 | 6.6 | 5.4 | 5.3 | 5.8 | 6.0 | 6.3 | 5.7 | 5.5 | 5.8 | 5.9 | 5.8 | 5.7 | 5.7 | 5.8 | 6.1 | 6.1 | 6.1 | 6.3 | 6.5 | 6.5 | 6.6 | 6.4 | 6.5 | 6.7 | 6.8 | 6.7 | 6.6 | 6.8 | 7.0 | 6.8 | 6.9 | 6.7 | 6.7 | 6.6 | 6.2 | 6.2 | 6.4 | 6.3 | 6.3 | 6.4 | 6.4 | 6.4 | 6.2 | 6.0 | 6.2 | 6.1 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.2 | 5.2 | 5.3 | 6.4 | 6.5 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.2 | 6.1 | 6.2 | 6.2 | 6.2 | 6.0 | 6.0 | 6.1 | 6.3 | 6.2 | 6.3 | 6.2 | 6.2 |
| GG | MAPQ < 3 | 6.4 | 5.2 | 5.3 | 5.9 | 6.0 | 6.2 | 5.8 | 5.6 | 5.9 | 6.0 | 5.9 | 5.8 | 5.9 | 6.0 | 6.1 | 6.1 | 6.1 | 6.2 | 6.3 | 6.2 | 6.3 | 6.2 | 6.2 | 6.3 | 6.3 | 6.4 | 6.3 | 6.4 | 6.4 | 6.5 | 6.5 | 6.3 | 6.4 | 6.4 | 6.3 | 6.3 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.4 | 6.3 | 6.3 | 6.3 | 5.4 | 5.4 | 6.4 | 6.3 | 6.3 | 6.3 | 6.4 | 6.4 | 6.4 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 |
| GG | Unmapped | 5.9 | 4.6 | 4.6 | 5.7 | 8.0 | 5.8 | 5.5 | 5.3 | 5.6 | 5.7 | 5.6 | 5.6 | 7.9 | 5.7 | 5.9 | 5.9 | 5.7 | 5.9 | 6.0 | 6.1 | 6.1 | 8.3 | 6.2 | 6.4 | 6.4 | 6.5 | 6.6 | 6.7 | 7.0 | 7.1 | 7.3 | 7.3 | 7.5 | 7.6 | 7.7 | 7.7 | 7.7 | 7.8 | 7.9 | 8.0 | 8.0 | 7.9 | 7.7 | 7.7 | 7.8 | 7.8 | 7.8 | 7.9 | 7.8 | 7.9 | 8.1 | 8.1 | 6.6 | 6.8 | 8.6 | 8.7 | 8.9 | 9.1 | 9.3 | 9.5 | 9.5 | 9.5 | 9.6 | 9.8 | 9.9 | 10.1 | 9.9 | 10.0 | 10.0 | 10.0 | 10.0 | 9.9 | 9.9 | 9.8 |
| GT | MAPQ >= 30 | 5.5 | 4.1 | 4.2 | 5.1 | 5.2 | 5.0 | 5.3 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 4.3 | 4.3 | 5.1 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.0 | 5.0 | 5.1 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 |
| GT | MAPQ >= 20 | 5.6 | 3.9 | 4.0 | 5.3 | 5.3 | 5.2 | 5.4 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 4.9 | 5.5 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.3 | 5.2 | 5.3 | 5.3 | 5.2 | 5.2 | 5.2 | 5.3 | 5.2 | 5.1 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 3.9 | 3.9 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 4.9 | 4.9 | 4.9 | 5.0 | 5.0 | 4.9 | 5.0 | 4.9 | 4.9 | 4.8 | 5.4 | 5.0 | 4.9 | 5.0 | 4.9 |
| GT | MAPQ >= 10 | 5.9 | 4.4 | 4.4 | 5.5 | 5.4 | 5.3 | 5.6 | 5.5 | 5.3 | 5.4 | 5.3 | 5.5 | 5.3 | 5.4 | 5.3 | 5.3 | 5.4 | 5.3 | 5.3 | 5.4 | 5.3 | 5.4 | 5.4 | 5.3 | 5.5 | 5.4 | 5.4 | 5.3 | 5.2 | 5.2 | 5.3 | 5.3 | 5.3 | 5.2 | 5.3 | 5.2 | 5.2 | 5.3 | 5.2 | 5.2 | 5.3 | 5.3 | 5.2 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.0 | 5.2 | 5.0 | 5.1 | 4.4 | 4.4 | 5.1 | 5.0 | 5.0 | 4.9 | 4.9 | 4.9 | 4.8 | 4.9 | 4.9 | 4.9 | 5.0 | 4.9 | 4.9 | 5.0 | 5.0 | 5.1 | 5.0 | 4.8 | 5.0 | 4.9 |
| GT | MAPQ >= 3 | 5.8 | 4.5 | 4.5 | 5.4 | 5.3 | 5.3 | 5.5 | 5.4 | 5.2 | 5.2 | 5.2 | 5.3 | 5.2 | 5.3 | 5.1 | 5.3 | 5.3 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.3 | 5.4 | 5.3 | 5.2 | 5.2 | 5.2 | 5.3 | 5.3 | 5.2 | 5.3 | 5.3 | 5.4 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.4 | 5.3 | 5.3 | 5.3 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 4.4 | 4.3 | 5.2 | 5.1 | 5.2 | 4.9 | 5.0 | 5.0 | 4.8 | 4.9 | 5.0 | 5.1 | 5.1 | 5.1 | 5.0 | 5.0 | 5.1 | 5.1 | 5.0 | 5.0 | 5.1 | 4.9 |
| GT | MAPQ < 3 | 5.7 | 4.2 | 4.3 | 5.2 | 5.3 | 5.2 | 5.4 | 5.2 | 5.1 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.2 | 5.2 | 5.1 | 5.1 | 5.2 | 5.2 | 5.2 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.2 | 5.2 | 5.2 | 5.2 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 5.1 | 4.3 | 4.3 | 5.1 | 5.0 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 |
| GT | Unmapped | 5.6 | 3.8 | 3.8 | 4.9 | 5.0 | 4.8 | 5.1 | 4.9 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 7.0 | 4.6 | 4.9 | 4.8 | 4.7 | 4.8 | 4.7 | 4.8 | 4.7 | 4.7 | 4.7 | 4.8 | 4.7 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.9 | 4.8 | 6.8 | 4.8 | 4.9 | 4.8 | 4.8 | 4.8 | 4.8 | 7.0 | 4.8 | 4.8 | 4.7 | 4.8 | 3.8 | 3.8 | 6.9 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.6 | 4.6 | 4.7 | 4.7 | 4.6 | 4.6 | 4.7 | 4.7 | 4.6 | 4.7 | 4.6 |
| TA | MAPQ >= 30 | 5.3 | 7.8 | 5.2 | 6.6 | 6.3 | 6.1 | 6.0 | 6.0 | 6.0 | 5.9 | 5.9 | 5.8 | 5.8 | 5.8 | 5.9 | 5.8 | 5.8 | 5.8 | 5.8 | 5.8 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.7 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.6 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 6.8 | 4.7 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.5 | 5.4 | 5.4 | 5.4 | 5.5 | 5.5 |
| TA | MAPQ >= 20 | 4.6 | 7.6 | 4.0 | 5.6 | 5.3 | 5.2 | 5.0 | 5.0 | 5.0 | 5.0 | 4.9 | 4.9 | 4.9 | 4.9 | 5.6 | 4.6 | 4.9 | 4.9 | 4.8 | 4.9 | 4.8 | 4.9 | 4.8 | 4.8 | 4.8 | 4.8 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.7 | 4.6 | 4.7 | 4.6 | 4.7 | 4.6 | 4.6 | 4.6 | 4.7 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 4.5 | 4.6 | 4.6 | 4.6 | 4.6 | 4.6 | 6.6 | 3.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.9 | 4.4 | 4.6 | 4.5 | 4.5 | 4.5 |
| TA | MAPQ >= 10 | 4.4 | 6.7 | 4.3 | 5.4 | 5.1 | 5.0 | 4.8 | 4.9 | 4.8 | 4.7 | 4.7 | 4.7 | 4.8 | 4.7 | 4.9 | 4.8 | 4.7 | 4.7 | 4.6 | 4.6 | 4.6 | 4.7 | 4.6 | 4.6 | 4.6 | 4.6 | 4.4 | 4.4 | 4.3 | 4.3 | 4.5 | 4.4 | 4.4 | 4.4 | 4.3 | 4.4 | 4.4 | 4.3 | 4.4 | 4.4 | 4.4 | 4.4 | 4.4 | 4.3 | 4.4 | 4.3 | 4.3 | 4.4 | 4.4 | 4.4 | 4.6 | 4.4 | 5.7 | 3.8 | 4.3 | 4.4 | 4.4 | 4.4 | 4.4 | 4.5 | 4.5 | 4.4 | 4.4 | 4.4 | 4.4 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.5 | 4.4 | 4.4 | 4.4 |
| TA | MAPQ >= 3 | 4.9 | 7.2 | 4.8 | 5.9 | 5.7 | 5.6 | 5.4 | 5.5 | 5.3 | 5.3 | 5.3 | 5.2 | 5.3 | 5.4 | 5.4 | 5.3 | 5.1 | 5.1 | 5.1 | 5.1 | 5.0 | 5.1 | 5.0 | 4.9 | 4.9 | 5.0 | 4.8 | 4.8 | 4.8 | 4.7 | 4.9 | 4.9 | 4.8 | 4.9 | 4.8 | 5.0 | 4.8 | 4.9 | 4.9 | 4.9 | 4.9 | 4.8 | 4.8 | 4.9 | 5.0 | 4.8 | 4.8 | 4.9 | 4.8 | 5.0 | 5.0 | 4.9 | 6.2 | 4.2 | 4.7 | 4.9 | 4.9 | 5.0 | 5.0 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 4.9 | 4.9 |
| TA | MAPQ < 3 | 4.5 | 8.0 | 4.4 | 5.7 | 5.4 | 5.3 | 5.1 | 5.1 | 5.1 | 5.0 | 5.0 | 5.0 | 5.0 | 5.1 | 5.1 | 5.0 | 5.0 | 4.9 | 4.9 | 4.9 | 4.9 | 5.0 | 4.9 | 4.9 | 4.8 | 4.8 | 4.8 | 4.8 | 4.7 | 4.7 | 4.8 | 4.8 | 4.8 | 4.7 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 4.7 | 4.8 | 4.7 | 4.8 | 4.8 | 4.8 | 4.7 | 4.7 | 4.8 | 4.8 | 4.8 | 4.8 | 4.8 | 7.0 | 4.0 | 4.7 | 4.7 | 4.8 | 4.7 | 4.8 | 4.8 | 4.8 | 4.7 | 4.7 | 4.7 | 4.7 | 4.8 | 4.8 | 4.7 | 4.8 | 4.8 | 4.8 | 4.8 | 4.7 | 4.7 |
| TA | Unmapped | 4.5 | 4.4 | 4.0 | 5.4 | 5.1 | 4.9 | 4.8 | 4.8 | 4.8 | 4.7 | 4.6 | 4.6 | 4.5 | 4.5 | 4.8 | 4.4 | 4.4 | 4.4 | 4.3 | 4.3 | 4.2 | 4.3 | 4.3 | 4.2 | 4.2 | 4.2 | 4.2 | 4.2 | 4.2 | 4.1 | 4.1 | 4.1 | 4.1 | 4.1 | 4.1 | 4.0 | 3.9 | 4.0 | 3.9 | 4.0 | 3.9 | 5.9 | 3.9 | 3.9 | 3.9 | 3.9 | 3.8 | 3.9 | 6.1 | 3.9 | 3.8 | 3.9 | 3.1 | 3.1 | 3.8 | 3.9 | 3.8 | 3.8 | 3.8 | 3.8 | 3.8 | 3.8 | 3.8 | 3.9 | 3.9 | 3.9 | 3.9 | 3.8 | 4.0 | 3.8 | 3.8 | 3.8 | 3.8 | 3.9 |
| TC | MAPQ >= 30 | 4.4 | 5.2 | 5.0 | 5.8 | 6.1 | 6.0 | 6.2 | 6.3 | 6.3 | 6.2 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.1 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 5.3 | 5.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 |
| TC | MAPQ >= 20 | 4.4 | 4.9 | 4.7 | 6.1 | 6.4 | 6.1 | 6.5 | 6.5 | 6.6 | 6.3 | 6.4 | 6.4 | 6.6 | 6.4 | 6.3 | 6.0 | 6.4 | 6.4 | 6.5 | 6.4 | 6.4 | 6.3 | 6.3 | 6.3 | 6.4 | 6.4 | 6.4 | 6.3 | 6.4 | 6.3 | 6.2 | 6.3 | 6.2 | 6.4 | 6.3 | 6.4 | 6.3 | 6.3 | 6.3 | 6.3 | 6.3 | 6.4 | 6.5 | 6.4 | 6.5 | 6.4 | 6.5 | 6.5 | 6.4 | 6.4 | 6.4 | 6.5 | 4.9 | 4.9 | 6.3 | 6.4 | 6.3 | 6.4 | 6.4 | 6.2 | 6.3 | 6.3 | 6.2 | 6.2 | 6.3 | 6.3 | 6.3 | 6.3 | 6.1 | 6.0 | 6.2 | 6.2 | 6.2 | 6.3 |
| TC | MAPQ >= 10 | 4.4 | 5.5 | 5.3 | 6.2 | 6.5 | 6.1 | 6.6 | 6.6 | 6.8 | 6.4 | 6.6 | 6.5 | 6.7 | 6.5 | 6.6 | 6.5 | 6.6 | 6.6 | 6.5 | 6.5 | 6.6 | 6.3 | 6.4 | 6.4 | 6.4 | 6.4 | 6.6 | 6.5 | 6.5 | 6.4 | 6.2 | 6.4 | 6.3 | 6.5 | 6.4 | 6.5 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.5 | 6.7 | 6.6 | 6.6 | 6.5 | 6.6 | 6.7 | 6.6 | 6.6 | 6.6 | 6.7 | 5.7 | 5.7 | 6.5 | 6.7 | 6.6 | 6.7 | 6.7 | 6.4 | 6.5 | 6.4 | 6.4 | 6.3 | 6.4 | 6.5 | 6.4 | 6.3 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 | 6.2 |
| TC | MAPQ >= 3 | 4.4 | 5.4 | 5.2 | 6.1 | 6.3 | 5.9 | 6.4 | 6.3 | 6.4 | 6.2 | 6.4 | 6.4 | 6.4 | 6.3 | 6.4 | 6.3 | 6.4 | 6.5 | 6.4 | 6.5 | 6.3 | 6.1 | 6.2 | 6.3 | 6.4 | 6.5 | 6.6 | 6.5 | 6.5 | 6.2 | 6.1 | 6.2 | 6.3 | 6.5 | 6.4 | 6.5 | 6.5 | 6.3 | 6.3 | 6.3 | 6.4 | 6.5 | 6.8 | 6.6 | 6.6 | 6.4 | 6.6 | 6.4 | 6.4 | 6.6 | 6.6 | 6.6 | 5.6 | 5.6 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.4 | 6.3 | 6.2 | 6.1 | 6.1 | 6.2 | 6.3 | 6.1 | 6.0 | 6.1 | 5.8 | 5.9 | 5.9 | 6.0 | 6.0 |
| TC | MAPQ < 3 | 4.5 | 5.4 | 5.3 | 6.2 | 6.4 | 6.2 | 6.6 | 6.6 | 6.6 | 6.5 | 6.6 | 6.5 | 6.6 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.4 | 6.4 | 6.4 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.4 | 6.3 | 6.4 | 6.4 | 6.5 | 6.4 | 6.5 | 6.4 | 6.5 | 6.4 | 6.4 | 6.4 | 6.5 | 6.5 | 6.5 | 6.5 | 6.5 | 6.6 | 6.6 | 6.5 | 6.5 | 6.5 | 6.6 | 5.6 | 5.6 | 6.5 | 6.5 | 6.5 | 6.5 | 6.6 | 6.4 | 6.5 | 6.5 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.4 | 6.3 | 6.4 | 6.3 | 6.3 | 6.3 | 6.4 |
| TC | Unmapped | 4.8 | 5.3 | 7.3 | 6.6 | 6.6 | 6.4 | 6.6 | 6.9 | 6.7 | 6.5 | 6.4 | 6.4 | 6.4 | 6.5 | 6.1 | 8.2 | 6.1 | 6.3 | 6.2 | 6.1 | 6.0 | 6.0 | 6.2 | 6.1 | 6.0 | 6.0 | 5.9 | 6.1 | 6.0 | 5.9 | 5.8 | 5.9 | 6.0 | 6.1 | 6.0 | 6.0 | 6.0 | 6.4 | 6.1 | 6.0 | 5.9 | 6.0 | 6.3 | 8.5 | 6.2 | 8.3 | 6.1 | 6.3 | 6.2 | 6.1 | 6.0 | 6.0 | 4.9 | 4.9 | 6.0 | 8.1 | 5.9 | 6.1 | 8.3 | 5.9 | 5.9 | 6.0 | 6.0 | 6.1 | 5.9 | 5.9 | 5.9 | 6.1 | 6.0 | 5.9 | 5.9 | 6.0 | 6.2 | 6.3 |
| TG | MAPQ >= 30 | 5.8 | 6.3 | 6.1 | 7.6 | 7.4 | 7.5 | 7.1 | 7.5 | 7.6 | 7.4 | 7.4 | 7.4 | 7.4 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.6 | 7.6 | 7.5 | 7.5 | 7.5 | 7.5 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 6.5 | 6.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 |
| TG | MAPQ >= 20 | 6.1 | 5.9 | 5.7 | 7.9 | 7.8 | 7.7 | 7.3 | 8.0 | 7.9 | 7.6 | 7.6 | 7.6 | 7.8 | 7.7 | 7.7 | 7.4 | 7.8 | 7.8 | 7.8 | 7.8 | 7.7 | 7.8 | 7.8 | 7.7 | 7.8 | 7.7 | 7.8 | 7.9 | 7.8 | 7.9 | 7.8 | 7.9 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.9 | 7.9 | 7.9 | 7.8 | 7.8 | 7.8 | 7.7 | 7.8 | 7.7 | 7.7 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 6.0 | 5.9 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.6 | 7.5 | 7.7 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.5 | 7.8 | 7.2 | 7.5 | 7.5 | 7.5 | 7.4 |
| TG | MAPQ >= 10 | 6.2 | 6.6 | 6.5 | 8.1 | 8.0 | 7.9 | 7.4 | 8.1 | 8.0 | 7.6 | 7.6 | 7.7 | 8.0 | 7.9 | 7.7 | 8.0 | 8.0 | 7.8 | 7.9 | 7.9 | 7.8 | 8.0 | 8.0 | 7.9 | 7.9 | 7.8 | 8.0 | 8.0 | 7.9 | 8.1 | 8.0 | 8.0 | 7.9 | 7.9 | 8.0 | 8.0 | 8.0 | 8.0 | 8.1 | 8.0 | 7.9 | 7.9 | 8.0 | 7.9 | 7.9 | 7.9 | 7.9 | 7.9 | 7.7 | 7.6 | 7.7 | 7.7 | 6.6 | 6.8 | 7.8 | 7.8 | 7.7 | 7.8 | 7.7 | 7.6 | 7.5 | 7.7 | 7.7 | 7.8 | 7.8 | 7.8 | 7.7 | 7.6 | 7.8 | 7.7 | 7.7 | 7.6 | 7.6 | 7.6 |
| TG | MAPQ >= 3 | 6.0 | 6.4 | 6.2 | 7.8 | 7.9 | 7.7 | 7.2 | 7.8 | 7.7 | 7.4 | 7.3 | 7.3 | 7.6 | 7.6 | 7.6 | 7.4 | 7.6 | 7.6 | 7.6 | 7.6 | 7.5 | 7.7 | 7.8 | 7.6 | 7.7 | 7.5 | 7.8 | 7.8 | 7.7 | 7.8 | 7.7 | 7.6 | 7.6 | 7.6 | 7.7 | 7.9 | 7.7 | 8.0 | 8.1 | 8.0 | 7.9 | 7.9 | 7.9 | 8.0 | 7.8 | 7.8 | 7.7 | 7.9 | 7.7 | 7.4 | 7.6 | 7.5 | 6.6 | 6.6 | 7.7 | 7.7 | 7.5 | 7.5 | 7.6 | 7.5 | 7.5 | 7.9 | 7.9 | 7.9 | 7.8 | 7.9 | 7.8 | 7.8 | 8.1 | 7.8 | 8.0 | 7.7 | 7.6 | 7.7 |
| TG | MAPQ < 3 | 6.0 | 6.4 | 6.3 | 7.9 | 7.7 | 7.7 | 7.2 | 7.8 | 7.8 | 7.6 | 7.5 | 7.6 | 7.6 | 7.6 | 7.6 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.8 | 7.7 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.7 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.8 | 7.7 | 7.7 | 7.7 | 7.8 | 7.7 | 7.6 | 7.7 | 7.7 | 6.5 | 6.6 | 7.6 | 7.7 | 7.6 | 7.7 | 7.7 | 7.7 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.6 | 7.7 | 7.8 | 7.7 | 7.7 | 7.7 | 7.6 | 7.6 |
| TG | Unmapped | 5.4 | 5.5 | 5.4 | 7.1 | 6.9 | 6.8 | 6.5 | 7.0 | 7.0 | 6.7 | 6.6 | 6.7 | 6.7 | 6.8 | 6.8 | 6.4 | 6.7 | 6.8 | 6.7 | 6.8 | 6.6 | 6.6 | 6.7 | 6.8 | 6.7 | 9.0 | 6.8 | 6.9 | 6.9 | 6.8 | 6.7 | 6.7 | 6.8 | 6.7 | 6.7 | 6.6 | 6.6 | 6.7 | 6.7 | 8.6 | 6.5 | 6.5 | 6.6 | 6.7 | 6.6 | 6.5 | 6.6 | 6.6 | 6.7 | 6.7 | 8.7 | 6.6 | 5.3 | 5.4 | 6.6 | 6.6 | 6.6 | 6.7 | 6.7 | 6.7 | 8.6 | 6.5 | 6.5 | 6.7 | 8.8 | 6.4 | 6.4 | 6.5 | 6.6 | 6.3 | 6.3 | 6.4 | 6.4 | 6.5 |
| TT | MAPQ >= 30 | 7.5 | 8.2 | 8.0 | 9.2 | 9.0 | 9.1 | 9.4 | 9.6 | 9.5 | 9.4 | 9.3 | 9.3 | 9.3 | 9.2 | 9.1 | 8.9 | 8.9 | 8.8 | 8.7 | 8.7 | 8.7 | 8.8 | 8.8 | 8.8 | 8.8 | 8.8 | 8.8 | 8.7 | 8.7 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.7 | 8.7 | 8.6 | 8.6 | 8.6 | 8.6 | 8.5 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.5 | 8.5 | 8.5 | 8.5 | 7.3 | 7.3 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.5 | 8.5 | 8.5 | 8.5 | 8.6 | 8.6 | 8.6 | 8.6 | 8.6 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 | 8.5 |
| TT | MAPQ >= 20 | 7.2 | 7.0 | 6.8 | 8.7 | 8.5 | 8.5 | 8.7 | 8.8 | 8.7 | 8.6 | 8.5 | 8.6 | 8.6 | 8.5 | 7.8 | 7.6 | 8.1 | 8.0 | 7.9 | 7.8 | 7.9 | 7.9 | 7.9 | 7.9 | 7.9 | 7.9 | 7.9 | 7.8 | 7.7 | 7.7 | 7.6 | 7.6 | 7.6 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.7 | 7.6 | 7.6 | 7.7 | 7.7 | 7.8 | 7.8 | 7.7 | 7.7 | 7.7 | 7.6 | 7.6 | 7.7 | 7.6 | 5.9 | 5.9 | 7.7 | 7.8 | 7.9 | 7.9 | 7.9 | 7.8 | 7.9 | 7.9 | 8.0 | 8.0 | 8.1 | 8.0 | 8.0 | 8.0 | 7.4 | 7.4 | 7.8 | 7.7 | 7.7 | 7.7 |
| TT | MAPQ >= 10 | 7.5 | 8.0 | 7.9 | 9.0 | 8.7 | 8.6 | 8.8 | 8.8 | 8.7 | 8.5 | 8.4 | 8.5 | 8.5 | 8.4 | 8.2 | 8.0 | 8.0 | 7.9 | 7.8 | 7.7 | 7.8 | 7.6 | 7.7 | 7.7 | 7.6 | 7.6 | 7.6 | 7.5 | 7.6 | 7.5 | 7.4 | 7.3 | 7.4 | 7.4 | 7.5 | 7.5 | 7.4 | 7.4 | 7.4 | 7.3 | 7.3 | 7.3 | 7.3 | 7.3 | 7.4 | 7.3 | 7.3 | 7.2 | 7.1 | 7.1 | 7.2 | 7.2 | 6.2 | 6.2 | 7.3 | 7.3 | 7.3 | 7.3 | 7.2 | 7.1 | 7.2 | 7.3 | 7.3 | 7.4 | 7.4 | 7.3 | 7.3 | 7.3 | 7.3 | 7.2 | 7.2 | 7.3 | 7.3 | 7.4 |
| TT | MAPQ >= 3 | 7.8 | 8.3 | 8.4 | 9.8 | 9.4 | 9.4 | 9.5 | 9.5 | 9.5 | 9.1 | 9.1 | 9.2 | 9.2 | 9.1 | 8.8 | 8.7 | 8.7 | 8.6 | 8.5 | 8.3 | 8.4 | 8.4 | 8.2 | 8.4 | 8.5 | 8.7 | 8.5 | 8.4 | 8.2 | 8.1 | 8.0 | 8.2 | 8.1 | 8.3 | 8.4 | 8.2 | 8.3 | 8.2 | 8.0 | 8.2 | 8.2 | 8.2 | 8.3 | 8.2 | 8.2 | 8.0 | 8.1 | 7.9 | 7.8 | 7.9 | 7.8 | 7.8 | 6.7 | 6.8 | 8.0 | 8.1 | 8.1 | 8.1 | 8.2 | 8.2 | 8.2 | 8.1 | 8.1 | 8.2 | 8.3 | 8.3 | 8.2 | 8.2 | 8.0 | 8.1 | 8.0 | 8.1 | 8.2 | 8.3 |
| TT | MAPQ < 3 | 7.4 | 8.1 | 7.9 | 9.0 | 8.8 | 8.8 | 9.1 | 9.2 | 9.1 | 9.0 | 8.9 | 8.9 | 8.9 | 8.8 | 8.6 | 8.5 | 8.5 | 8.4 | 8.4 | 8.3 | 8.3 | 8.3 | 8.3 | 8.3 | 8.3 | 8.3 | 8.3 | 8.2 | 8.2 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.2 | 8.2 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.0 | 7.9 | 7.9 | 8.0 | 8.0 | 6.8 | 6.8 | 8.0 | 8.1 | 8.1 | 8.0 | 8.0 | 8.0 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.1 | 8.0 | 8.0 | 8.0 | 8.1 | 8.1 |
| TT | Unmapped | 6.7 | 7.2 | 7.2 | 8.9 | 9.0 | 9.3 | 9.9 | 10.3 | 10.3 | 10.4 | 10.6 | 11.1 | 11.3 | 11.3 | 13.4 | 11.3 | 11.9 | 11.9 | 11.9 | 11.9 | 12.1 | 12.4 | 12.4 | 12.3 | 12.1 | 11.9 | 11.9 | 11.7 | 11.5 | 11.2 | 11.1 | 11.2 | 11.1 | 11.0 | 11.0 | 11.0 | 11.1 | 11.0 | 10.9 | 10.8 | 10.9 | 11.1 | 11.0 | 10.9 | 10.8 | 10.7 | 10.8 | 10.6 | 10.2 | 10.0 | 9.9 | 9.9 | 7.8 | 7.6 | 9.4 | 9.4 | 9.5 | 11.5 | 9.1 | 8.9 | 8.9 | 8.9 | 8.9 | 10.9 | 8.5 | 8.4 | 8.6 | 8.5 | 8.1 | 8.0 | 8.2 | 8.4 | 8.4 | 8.3 |
Percentage of 2-mers at each position of the read for each alignment quality interval. Numbers shown in bold corresponds to p-values of <= 1e-100.
| MAPQ >= 30 | MAPQ >= 20 | MAPQ >= 10 | MAPQ >= 3 | MAPQ < 3 |
| A | C | G | T | N |
| A | C | G | T | N |
| A | C | G | T | N |
| A | C | G | T | N |
| A | C | G | T | N |
| A | C | G | T | N |
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AA AT AG CA CT |
AA TT TA CA GA |
AA AT TT AG TG |
AA TT TG AG AT |
AA TT AT AG TG |
AA TT TG AT AG |
AA TT AT CT AG |
TT AA TG AT CT |
TT AA TG CA CT |
TT AA CA TG AG |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA CA TG AG |
AA TT TG CA AG |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CA CT |
AA TT CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA TG CA AG |
TT AA TG CA AG |
TT AA TG CA AG |
TT AA TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT TG CA AG |
AA TT TG CA CT |
AA TT TG CA CT |
TT AA TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
TT AA TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT CA TG CT |
AA TT CA TG CT |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA TG CA AG |
TT AA TG CA AG |
TT AA TG CA AG |
AA TT CA TG AG |
AA TT CA TG AG |
TT AA CA TG CT |
AA TT CA TG CT |
AA CA TT GA TA |
AA AG AT TT CA |
AA TT CA TG CT |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA TG CA AG |
TT AA TG CA AG |
TT AA CA TG CT |
TT AA CA TG AG |
TT AA CA TG CT |
TT AA CA TG AG |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AA AG CA CT AT |
AA GA TA CA TT |
AA AT AG TT AC |
TT AA TG AG CA |
TT AA TG AG CA |
TT AA TG CA AG |
TT AA TG CT CA |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA CA TG AG |
TT AA TG CA AG |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CA CT |
AA TT CA TG AG |
AA TT AG TG CA |
TT TG AA CA CT |
TT TG AA CA CT |
TT TG AA CA CT |
TT TG CA AA CT |
TT TG AA CA CT |
TT TG CA AA CT |
TT TG AA CA CT |
TT CA TG AA AG |
TT AA TG CA AG |
TT TG AA CA AG |
TT TG CA AA CT |
TG TT CA AA AG |
TG TT CA AA AG |
TG CA TT AA AG |
TG CA TT AA AG |
TG CA AA TT AG |
TG CA TT AA AG |
TG TT AA CA CT |
TG TT CA AA CT |
TG TT CA AA AG |
TG CA AA TT CT |
TG CA TT AA CT |
TG TT CA AA AG |
TG CA TT AA AG |
TG AA TT CA CT |
TG TT CA AA CT |
TG TT CA AA CT |
TT TG CA AA CT |
TG TT CA AA CT |
TG TT AA CA CT |
TG TT AA CA CT |
TG CA TT AA CT |
CA AA TG TT AG |
AA CA TT TG CT |
TG AA CA TT CT |
AA CA TG TT CT |
AA CA GA TA TG |
AA AG AT AC TG |
AA TT TG CA CT |
TT AA TG CA CT |
AA TT TG CA CT |
TT AA TG CA CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT CA CT TG |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT TG CA CT |
TT AA TG CA CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT CA TG AG |
AA TG CA AG TT |
AA AG TT CA GG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA AG TG |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AA AG CA CT AT |
AA TT GA CA TA |
AA AT TT AG TG |
TT TG AA CA AG |
TT AA TG AG CA |
TT AA TG CA CT |
TT AA TG CT CA |
TT TG AA CA CT |
TT TG AA CA AG |
TT AA CA TG CT |
TT AA TG CA AG |
TT AA TG CA CT |
TT TG AA CA CT |
TT TG AA CA CT |
TT TG CA CT AA |
TT TG CA AA CT |
TT TG CA AA CT |
TT TG CA CT AG |
TG TT CA CT AA |
TG CA TT AA CT |
TG TT CA CT AA |
TG CA TT CT AA |
TG CA TT AG AA |
TG CA TT AA AG |
TG CA TT AA AG |
TG CA TT AA AG |
TG CA TT AA CT |
TG CA TT AA AG |
TG CA TT AA AG |
TG CA AG TT AA |
TG CA TT AG AA |
CA TG TT AG AA |
TG CA CT AG AA |
TG CA AA TT CT |
TG CA TT AA CT |
TG CA TT AA AG |
TG CA AA TT CT |
TG CA AA TT CT |
TG CA AA CT TT |
TG CA AA AG TT |
TG CA AA CT TT |
TG CA CT AA TT |
TG CA CT AA TT |
TG CA CT AA AG |
CA TG AA TT CT |
TG CA AA AG CT |
TG CA AA CT TT |
TG CA AA CT AG |
CA TG AA AG CT |
CA AA CT TG AG |
CA AA TG CT AG |
AA TG CA CT AG |
CA AA GA TG CT |
AA AG AT TG CA |
AA TG CA CT AG |
AA TG CA CT TT |
AA CA TG CT AG |
AA TG CA CT AG |
AA CA TG CT TT |
AA CA TG CT AG |
AA CA CT TG AG |
AA CA TG CT TT |
AA CA TG CT TT |
AA CA TG CT TT |
AA TG CA CT TT |
AA TG CA CT TT |
AA CA TG CT TT |
AA CA TG AG CT |
AA TG CA AG CT |
AA TG CA AG TT |
AA CA TG AG CT |
AA CA TG AG TT |
AA CA TG AG TT |
AA CA TG TT AG |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AA AT CA AG TT |
AA TT TA CA GA |
AA AT TT AG TG |
TT AA TG CA AT |
TT AA TG AT CA |
TT AA TG CA AT |
TT AA AT TG CA |
TT AA TG CA AT |
TT AA TG CA AG |
TT AA CA TG AG |
TT AA CA TG AG |
TT AA CA TG CT |
TT AA CA TG AG |
TT AA TG CA AG |
TT AA CA TG CT |
TT AA TG CA AG |
TT AA TG CA AG |
TT AA TG CA AG |
TT AA CA TG CT |
TT AA CA TG AG |
TT AA CA TG AG |
TT AA TG CA AG |
TT AA TG CA AG |
TT AA CA TG AG |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA TG CA CT |
TT AA CA TG AG |
TT AA CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT TG CA CT |
AA TG TT CA CT |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CT CA |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT CA CT TG |
AA CA GA TT TG |
AA AG AT TT TG |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CT CA |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CT CA |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TG TT CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA CT |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AA CA AG AT CT |
AA GA TT TA CA |
AA AT AG TT AC |
TT AA TG CA AG |
TT AA TG AG AT |
TT AA TG CA AG |
TT AA AT TG CA |
TT AA TG CA CT |
TT AA TG CA AG |
TT AA CA TG AG |
TT AA CA TG AG |
TT AA CA TG CT |
TT AA TG CA AG |
TT AA TG CA CT |
TT AA CA TG CT |
TT AA TG CA AG |
TT AA TG CA AG |
TT AA TG CA AG |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CA CT |
TT AA TG CA AG |
TT AA CA TG AG |
TT AA TG CA CT |
TT AA TG CA AG |
TT AA TG CA AG |
TT AA TG CA AG |
TT AA CA TG AG |
TT AA TG CA AG |
TT AA CA TG CT |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT TG CA AG |
TT AA CA TG CT |
AA TT TG CA AG |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA CT |
TT AA TG CA CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT TG CA AG |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT CA TG AG |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA CA GA TA TT |
AA AG AT AC TT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT TG CA CT |
AA TT CA TG CT |
AA TT TG CA CT |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT TG CA AG |
AA TT CA TG AG |
AA TT CA TG AG |
AA TT CA TG AG |
Top 5 enriched 2-mers at each positon within reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| Pos | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 11 | 12 | 13 | 14 | 15 | 16 | 17 | 18 | 19 | 20 | 21 | 22 | 23 | 24 | 25 | 26 | 27 | 28 | 29 | 30 | 31 | 32 | 33 | 34 | 35 | 36 | 37 | 38 | 39 | 40 | 41 | 42 | 43 | 44 | 45 | 46 | 47 | 48 | 49 | 50 | 51 | 52 | 53 | 54 | 55 | 56 | 57 | 58 | 59 | 60 | 61 | 62 | 63 | 64 | 65 | 66 | 67 | 68 | 69 | 70 | 71 | 72 | 73 | 74 |
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seq |
AA GA AT AG CA |
AT AA TT GA AG |
TC TT AA AT AG |
TT AA TG AT CA |
TT AA GG TG AT |
TT GA AA CA AT |
AA TT AT CT TC |
TT AA AG TG CT |
TT AA GA TG CA |
TT AA AG CA TG |
TT AA GC CA CT |
TT AA CA TG CT |
TT AA GG TG CT |
TT AA GT TG CA |
TT AA TG CA AG |
TT AA TC CA AT |
TT AA CA TG CT |
TT AA AG TG CA |
TT AA GC TG CA |
TT AA CA TG CT |
TT AA AG CA TG |
TT AA GG TG CA |
TT AA GA TG AG |
TT AA TG CA GG |
TT AA AT TG CA |
TT AA TG GG CA |
TT AA TG GC GG |
TT AA CC TG GG |
TT AA GG TG AG |
TT AA GA GG TG |
TT AA AG GG TG |
TT AA GA GG TG |
TT AA GG AC TG |
TT AA CC GG TG |
TT AA GG TG AG |
TT AA GG GA TG |
TT AA GG TG AG |
TT AA GA GG TG |
TT AA GG AT TG |
TT AA TG GG CC |
TT AA GG GT CC |
TT AA GG TG CC |
TT AA AT GG TG |
TT TC AA GG TG |
TT AA CT GG CC |
TT AA TC GG CC |
TT AA GG CC TG |
TT AA GG CC GT |
TT AA GG CC TG |
TT AA GG AT CC |
TT TG AA GG CC |
TT AA GG CC GC |
TT CC GG AA TG |
TT GG AA CC TG |
TT GG AA CC GT |
TT GG AA TC CC |
TT GG CT AA CC |
TT GG AA CC TG |
GG TT TC AA CC |
GG TT CT AA CC |
GG TT TG AA CC |
GG TT AA CC GC |
GG TT CT AA CC |
TT GG AA CC TG |
GG TG TT AA CC |
GG GA TT AA CC |
AA GG TT CC AG |
AA GG TT CC TG |
AA GG TT CC TG |
AA GG TT CC GA |
AA GG TT CC GA |
AA GG TT CC GA |
GG AA TT CC AG |
GG AA TT CC TG |
Top 5 enriched 2-mers at each positon withion reads are shown. Red, orange, green and blue corresponds to p-values 1e-100, 1e-20, 1e-10 and 1e-5 respectively.
| MAPQ >= 30 | MAPQ >= 20 | MAPQ >= 10 | MAPQ >= 3 | MAPQ < 3 | Unmapped | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Seqence | Count | P-value | Seqence | Count | P-value | Seqence | Count | P-value | Seqence | Count | P-value | Seqence | Count | P-value | Seqence | Count | P-value |
| CAGGCTGGAG | 447394 | 0.0e+00 | TTTTTTTTTT | 115752 | 0.0e+00 | GGAGGCTGAG | 45210 | 0.0e+00 | CTCCTGACCT | 10199 | 0.0e+00 | GGAGGCTGAG | 83425 | 0.0e+00 | TTTTTTTTTT | 2058269 | 0.0e+00 |
| GGGATTACAG | 401546 | 0.0e+00 | AAAAAAAAAA | 103925 | 0.0e+00 | GAGGCTGAGG | 44717 | 0.0e+00 | GAGGCTGAGG | 9944 | 0.0e+00 | GAGGCTGAGG | 82845 | 0.0e+00 | AAAAAAAAAA | 982230 | 0.0e+00 |
| TGGGAGGCTG | 270982 | 0.0e+00 | GGAGGCTGAG | 48861 | 0.0e+00 | AGGCTGAGGC | 41951 | 0.0e+00 | GGAGGCTGAG | 9921 | 0.0e+00 | AGGCTGAGGC | 77067 | 0.0e+00 | ATTCCATTCC | 208417 | 0.0e+00 |
| TGCCTGTAAT | 266907 | 0.0e+00 | GAGGCTGAGG | 48412 | 0.0e+00 | GGCTGAGGCA | 39376 | 0.0e+00 | AGGCTGAGGC | 9564 | 0.0e+00 | AGGCAGGAGA | 72282 | 0.0e+00 | TTCCATTCCA | 207195 | 0.0e+00 |
| TGCCCAGGCT | 254111 | 0.0e+00 | AGGCTGAGGC | 43980 | 0.0e+00 | GCTGAGGCAG | 38622 | 0.0e+00 | TCCTGACCTC | 9082 | 0.0e+00 | GGCTGAGGCA | 72103 | 0.0e+00 | CCATTCCATT | 203387 | 0.0e+00 |
| GTGCTGGGAT | 247228 | 0.0e+00 | TAATCCCAGC | 42249 | 0.0e+00 | TCCCAGCTAC | 38092 | 0.0e+00 | GGCTGAGGCA | 8949 | 0.0e+00 | TCCCAGCTAC | 71550 | 0.0e+00 | TCCATTCCAT | 202582 | 0.0e+00 |
| TGTTGCCCAG | 241885 | 0.0e+00 | TGTAATCCCA | 40855 | 0.0e+00 | CCCAGCTACT | 37663 | 0.0e+00 | GCTGAGGCAG | 8859 | 0.0e+00 | GGCAGGAGAA | 70979 | 0.0e+00 | CATTCCATTC | 197699 | 0.0e+00 |
| GTTGCCCAGG | 230883 | 0.0e+00 | GTAATCCCAG | 40188 | 0.0e+00 | CTGAGGCAGG | 37557 | 0.0e+00 | CTGAGGCAGG | 8846 | 0.0e+00 | CCCAGCTACT | 70761 | 0.0e+00 | GGAATGGAAT | 193456 | 0.0e+00 |
| CATGCCTGTA | 229782 | 0.0e+00 | GGCTGAGGCA | 39795 | 0.0e+00 | CTCAGCCTCC | 37179 | 0.0e+00 | AGGCAGGAGA | 8711 | 0.0e+00 | GCTGAGGCAG | 70738 | 0.0e+00 | TGGAATGGAA | 192791 | 0.0e+00 |
| ACTCCAGCCT | 219051 | 0.0e+00 | TCCCAGCTAC | 39759 | 0.0e+00 | CCTCAGCCTC | 36998 | 0.0e+00 | GGCAGGAGAA | 8530 | 0.0e+00 | CTGAGGCAGG | 69578 | 0.0e+00 | AATGGAATGG | 189564 | 0.0e+00 |
| TTATTTATTT | 214103 | 0.0e+00 | CTGTAATCCC | 39696 | 0.0e+00 | AGGCAGGAGA | 35157 | 0.0e+00 | TCCCAGCTAC | 8481 | 0.0e+00 | CTCAGCCTCC | 68762 | 0.0e+00 | ATGGAATGGA | 189030 | 0.0e+00 |
| TTTTTTGAGA | 206283 | 0.0e+00 | CCCAGCTACT | 39136 | 0.0e+00 | TGAGGCAGGA | 34954 | 0.0e+00 | CCCAGCTACT | 8395 | 0.0e+00 | CCTCAGCCTC | 68446 | 0.0e+00 | GAATGGAATG | 183510 | 0.0e+00 |
| TTTATTTATT | 204045 | 0.0e+00 | CCTGTAATCC | 39056 | 0.0e+00 | CTCACTGCAA | 34604 | 0.0e+00 | TGAGGCAGGA | 8379 | 0.0e+00 | CTCCTGACCT | 67948 | 0.0e+00 | GGGGGGGGGG | 180767 | 0.0e+00 |
| TTGTTTGTTT | 202562 | 0.0e+00 | GCTGAGGCAG | 38380 | 0.0e+00 | GGCAGGAGAA | 34528 | 0.0e+00 | GAGGCAGGAG | 8257 | 0.0e+00 | TCTCCTGCCT | 67291 | 0.0e+00 | ACACACACAC | 172435 | 0.0e+00 |
| TTTTATTTTT | 200245 | 0.0e+00 | CTCAGCCTCC | 37909 | 0.0e+00 | GCCTCAGCCT | 34354 | 0.0e+00 | CCTCAGCCTC | 8183 | 0.0e+00 | TTCTCCTGCC | 67099 | 0.0e+00 | CACACACACA | 171571 | 0.0e+00 |
| GGTGGCTCAC | 196745 | 0.0e+00 | CCTCAGCCTC | 37541 | 0.0e+00 | GAGGCAGGAG | 34327 | 0.0e+00 | CTCAGCCTCC | 8117 | 0.0e+00 | TGAGGCAGGA | 65714 | 0.0e+00 | GAGAGAGAGA | 167342 | 0.0e+00 |
| TTTGTTTGTT | 190772 | 0.0e+00 | CTGAGGCAGG | 36943 | 0.0e+00 | GCTCACTGCA | 34190 | 0.0e+00 | GCCTCAGCCT | 7827 | 0.0e+00 | GAGGCAGGAG | 65506 | 0.0e+00 | AGAGAGAGAG | 162256 | 0.0e+00 |
| AAAAAGAAAA | 184418 | 0.0e+00 | AAATACAAAA | 35913 | 0.0e+00 | AAATACAAAA | 33709 | 0.0e+00 | GCAGGAGAAT | 7805 | 0.0e+00 | GGGAGGCTGA | 64558 | 0.0e+00 | TGTGTGTGTG | 153891 | 0.0e+00 |
| CACCTGTAAT | 183950 | 0.0e+00 | GCTCACTGCA | 35633 | 0.0e+00 | TAATCCCAGC | 33634 | 0.0e+00 | TCTCCTGCCT | 7694 | 0.0e+00 | GCCTCAGCCT | 63912 | 0.0e+00 | GTGTGTGTGT | 153644 | 0.0e+00 |
| TTTTTTTTTC | 180428 | 0.0e+00 | AAAATACAAA | 35565 | 0.0e+00 | AAAATACAAA | 33371 | 0.0e+00 | TTCTCCTGCC | 7639 | 0.0e+00 | AAATACAAAA | 61544 | 0.0e+00 | CCCCCCCCCC | 149861 | 0.0e+00 |