FitHiChIP summary Report

Parameter list for the current execution of FitHiChIP: /projects/epigenomics3/temp/esu/EGL_696/hiseq/FitHiChIP_analysis/HiChIP_28_GFPDOX_CTCF_Rep2/Parameters.txt

List of CIS interactions within the specified distance thresholds (lower threshold: 20000 upper threshold: 2000000 ): /projects/epigenomics3/temp/esu/EGL_696/hiseq/FitHiChIP_analysis/HiChIP_28_GFPDOX_CTCF_Rep2/HiCPro_Matrix_BinSize5000/L_20000_U2000000/CTCF_2.5kb.cis.interactions.DistThr.bed

Bin specific HiChIP coverage, coverage bias, and peak / non-peak boolean values: /projects/epigenomics3/temp/esu/EGL_696/hiseq/FitHiChIP_analysis/HiChIP_28_GFPDOX_CTCF_Rep2/NormFeatures/Coverage_Bias/CTCF_2.5kb.coverage_Bias.bed

Statistics for peak to peak loops

Statistics for Coverage bias regression

All interactions with their FitHiChIP significance values: /projects/epigenomics3/temp/esu/EGL_696/hiseq/FitHiChIP_analysis/HiChIP_28_GFPDOX_CTCF_Rep2/FitHiChIP_Peak2Peak_b5000_L20000_U2000000/Coverage_Bias/FitHiC_BiasCorr/CTCF_2.5kb.interactions_FitHiC.bed

Significant interactions: /projects/epigenomics3/temp/esu/EGL_696/hiseq/FitHiChIP_analysis/HiChIP_28_GFPDOX_CTCF_Rep2/FitHiChIP_Peak2Peak_b5000_L20000_U2000000/Coverage_Bias/FitHiC_BiasCorr/CTCF_2.5kb.interactions_FitHiC_Q0.01.bed

After merging adjacent loops (connected component modeling) significant interactions: /projects/epigenomics3/temp/esu/EGL_696/hiseq/FitHiChIP_analysis/HiChIP_28_GFPDOX_CTCF_Rep2/FitHiChIP_Peak2Peak_b5000_L20000_U2000000/Coverage_Bias/FitHiC_BiasCorr/Merge_Nearby_Interactions/CTCF_2.5kb.interactions_FitHiC_Q0.01_MergeNearContacts.bed