FitHiChIP summary Report

Parameter list for the current execution of FitHiChIP: /projects/epigenomics3/temp/esu/EGL_696/hiseq/FitHiChIP_analysis/HiChIP_29_SNF5DOX_H3K27ac_Rep1/Parameters.txt

List of CIS interactions within the specified distance thresholds (lower threshold: 10000 upper threshold: 2000000 ): /projects/epigenomics3/temp/esu/EGL_696/hiseq/FitHiChIP_analysis/HiChIP_29_SNF5DOX_H3K27ac_Rep1/HiCPro_Matrix_BinSize5000/L_10000_U2000000/H3K27ac_2.5kb.cis.interactions.DistThr.bed

Number of interacting (non zero contacts) bin pairs ( all to all ) : 7576810

Bin specific HiChIP coverage, coverage bias, and peak / non-peak boolean values: /projects/epigenomics3/temp/esu/EGL_696/hiseq/FitHiChIP_analysis/HiChIP_29_SNF5DOX_H3K27ac_Rep1/NormFeatures/Coverage_Bias/H3K27ac_2.5kb.coverage_Bias.bed


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Statistics for peak to ALL (both peak and non-peak) loops

FitHiChIP background (0 means loose, 1 means stringent ) : 0


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Statistics for Coverage bias regression

All interactions with their FitHiChIP significance values: /projects/epigenomics3/temp/esu/EGL_696/hiseq/FitHiChIP_analysis/HiChIP_29_SNF5DOX_H3K27ac_Rep1/FitHiChIP_Peak2ALL_b5000_L10000_U2000000/P2PBckgr_0/Coverage_Bias/FitHiC_BiasCorr/H3K27ac_2.5kb.interactions_FitHiC.bed

Number of interactions considered: 1861886

Significant interactions: /projects/epigenomics3/temp/esu/EGL_696/hiseq/FitHiChIP_analysis/HiChIP_29_SNF5DOX_H3K27ac_Rep1/FitHiChIP_Peak2ALL_b5000_L10000_U2000000/P2PBckgr_0/Coverage_Bias/FitHiC_BiasCorr/H3K27ac_2.5kb.interactions_FitHiC_Q0.01.bed

Total number of significant interactions ( FDR 0.01 ) : 2856

After merging adjacent loops (connected component modeling) significant interactions: /projects/epigenomics3/temp/esu/EGL_696/hiseq/FitHiChIP_analysis/HiChIP_29_SNF5DOX_H3K27ac_Rep1/FitHiChIP_Peak2ALL_b5000_L10000_U2000000/P2PBckgr_0/Coverage_Bias/FitHiC_BiasCorr/Merge_Nearby_Interactions/H3K27ac_2.5kb.interactions_FitHiC_Q0.01_MergeNearContacts.bed

Total number of significant interactions ( FDR 0.01 ) after merging adjacent loops: 2373

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Statistics for peak to ALL (both peak and non-peak) loops

FitHiChIP background (0 means loose, 1 means stringent ) : 1


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