Package: BSgenome.Athaliana.TAIR.04232008 Title: Full genome sequences for Arabidopsis thaliana (TAIR version from April 23, 2008) Description: Full genome sequences for Arabidopsis thaliana as provided by TAIR (snapshot from April 23, 2008) and stored in Biostrings objects. Version: 1.4.2 organism: Arabidopsis thaliana common_name: Arabidopsis provider: TAIR provider_version: 04232008 release_date: NA release_name: dumped from ADB: Mar/14/08 source_url: ftp://ftp.arabidopsis.org/home/tair/Sequences/whole_chromosomes/ organism_biocview: Arabidopsis_thaliana BSgenomeObjname: Athaliana seqnames: paste("chr", c(1:5, "C", "M"), sep="") circ_seqs: c("chrC", "chrM") SrcDataFiles: all the chr*.fas file from ftp://ftp.arabidopsis.org/home/tair/Sequences/whole_chromosomes/ WARNING: This is where things are today (Oct 1st, 2008) but is probably NOT aimed to be the permanent URL for the 04232008 snapshot of the genome. TAIR might update the content of this folder in the future with a new snapshot and move the 04232008 snapshot to the OLD/ subfolder. PkgExamples: genome$chr1 # same as genome[["chr1"]] seqs_srcdir: /fh/fast/morgan_m/BioC/BSgenomeForge/srcdata/BSgenome.Athaliana.TAIR.04232008/seqs seqfiles_suffix: .fas ondisk_seq_format: rda