Bioconductor facilities for parallel evaluation
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Documentation for package ‘BiocParallel’ version 1.28.3
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| BiocParallel-package | Bioconductor facilities for parallel evaluation |
-- B --
| BatchJobsParam | Enable parallelization on batch systems |
| BatchJobsParam-class | Enable parallelization on batch systems |
| batchtoolsCluster | Enable parallelization on batch systems |
| BatchtoolsParam | Enable parallelization on batch systems |
| BatchtoolsParam-class | Enable parallelization on batch systems |
| batchtoolsRegistryargs | Enable parallelization on batch systems |
| batchtoolsTemplate | Enable parallelization on batch systems |
| batchtoolsWorkers | Enable parallelization on batch systems |
| BiocParallel | Bioconductor facilities for parallel evaluation |
| BiocParallelParam | BiocParallelParam objects |
| BiocParallelParam-class | BiocParallelParam objects |
| BIOCPARALLEL_WORKER_NUMBER | Enable simple network of workstations (SNOW)-style parallel evaluation |
| bpaggregate | Apply a function on subsets of data frames |
| bpaggregate-method | Apply a function on subsets of data frames |
| bpbackend | BiocParallelParam objects |
| bpbackend-method | Enable parallelization on batch systems |
| bpbackend-method | Enable parallelization on batch systems |
| bpbackend-method | BiocParallelParam objects |
| bpbackend-method | Enable parallel evaluation using registered dopar backend |
| bpbackend-method | Enable multi-core parallel evaluation |
| bpbackend-method | Enable serial evaluation |
| bpbackend-method | Enable simple network of workstations (SNOW)-style parallel evaluation |
| bpbackend<- | BiocParallelParam objects |
| bpbackend<-,BatchJobsParam | Enable parallelization on batch systems |
| bpbackend<--method | BiocParallelParam objects |
| bpbackend<--method | Enable parallel evaluation using registered dopar backend |
| bpbackend<--method | Enable simple network of workstations (SNOW)-style parallel evaluation |
| bperrorTypes | Resume computation with partial results |
| bpexportglobals | BiocParallelParam objects |
| bpexportglobals-method | BiocParallelParam objects |
| bpexportglobals<- | BiocParallelParam objects |
| bpexportglobals<--method | BiocParallelParam objects |
| bpforceGC | BiocParallelParam objects |
| bpforceGC-method | BiocParallelParam objects |
| bpforceGC<- | BiocParallelParam objects |
| bpforceGC<--method | BiocParallelParam objects |
| bpisup | BiocParallelParam objects |
| bpisup-method | Enable parallelization on batch systems |
| bpisup-method | Enable parallelization on batch systems |
| bpisup-method | BiocParallelParam objects |
| bpisup-method | Enable parallel evaluation using registered dopar backend |
| bpisup-method | Enable multi-core parallel evaluation |
| bpisup-method | Enable serial evaluation |
| bpisup-method | Enable simple network of workstations (SNOW)-style parallel evaluation |
| bpiterate | Parallel iteration over an indeterminate number of data chunks |
| bpiterate-method | Parallel iteration over an indeterminate number of data chunks |
| bpjobname | BiocParallelParam objects |
| bpjobname-method | BiocParallelParam objects |
| bpjobname<- | BiocParallelParam objects |
| bpjobname<--method | BiocParallelParam objects |
| bplapply | Parallel lapply-like functionality |
| bplapply-method | Enable parallelization on batch systems |
| bplapply-method | Parallel lapply-like functionality |
| bplog | BiocParallelParam objects |
| bplog-method | BiocParallelParam objects |
| bplog-method | Enable serial evaluation |
| bplog-method | Enable simple network of workstations (SNOW)-style parallel evaluation |
| bplog<- | BiocParallelParam objects |
| bplog<--method | Enable serial evaluation |
| bplog<--method | Enable simple network of workstations (SNOW)-style parallel evaluation |
| bplogdir | BiocParallelParam objects |
| bplogdir-method | Enable parallelization on batch systems |
| bplogdir-method | BiocParallelParam objects |
| bplogdir-method | Enable serial evaluation |
| bplogdir<- | BiocParallelParam objects |
| bplogdir<--method | Enable parallelization on batch systems |
| bplogdir<--method | BiocParallelParam objects |
| bplogdir<--method | Enable serial evaluation |
| bploop | Internal Functions for SNOW-style Parallel Evaluation |
| bploop.iterate | Internal Functions for SNOW-style Parallel Evaluation |
| bploop.lapply | Internal Functions for SNOW-style Parallel Evaluation |
| bpmapply | Parallel mapply-like functionality |
| bpmapply-method | Parallel mapply-like functionality |
| bpnworkers | BiocParallelParam objects |
| bpok | Resume computation with partial results |
| bpparam | Maintain a global registry of available back-end Params |
| bpprogressbar | BiocParallelParam objects |
| bpprogressbar-method | BiocParallelParam objects |
| bpprogressbar<- | BiocParallelParam objects |
| bpprogressbar<--method | BiocParallelParam objects |
| bpresultdir | BiocParallelParam objects |
| bpresultdir-method | BiocParallelParam objects |
| bpresultdir<- | BiocParallelParam objects |
| bpresultdir<--method | BiocParallelParam objects |
| bpRNGseed | BiocParallelParam objects |
| bpRNGseed-method | Enable parallelization on batch systems |
| bpRNGseed-method | BiocParallelParam objects |
| bpRNGseed<- | BiocParallelParam objects |
| bpRNGseed<--method | Enable parallelization on batch systems |
| bpRNGseed<--method | BiocParallelParam objects |
| bprunMPIslave | Internal Functions for SNOW-style Parallel Evaluation |
| bprunMPIworker | Internal Functions for SNOW-style Parallel Evaluation |
| bpschedule | Schedule back-end Params |
| bpschedule-method | Enable parallelization on batch systems |
| bpschedule-method | Enable parallelization on batch systems |
| bpschedule-method | Enable multi-core parallel evaluation |
| bpschedule-method | Schedule back-end Params |
| bpstart | BiocParallelParam objects |
| bpstart-method | Enable parallelization on batch systems |
| bpstart-method | Enable parallelization on batch systems |
| bpstart-method | BiocParallelParam objects |
| bpstart-method | Enable parallel evaluation using registered dopar backend |
| bpstart-method | Enable multi-core parallel evaluation |
| bpstart-method | Enable serial evaluation |
| bpstart-method | Enable simple network of workstations (SNOW)-style parallel evaluation |
| bpstop | BiocParallelParam objects |
| bpstop-method | Enable parallelization on batch systems |
| bpstop-method | Enable parallelization on batch systems |
| bpstop-method | BiocParallelParam objects |
| bpstop-method | Enable parallel evaluation using registered dopar backend |
| bpstop-method | Enable multi-core parallel evaluation |
| bpstop-method | Enable serial evaluation |
| bpstop-method | Enable simple network of workstations (SNOW)-style parallel evaluation |
| bpstopOnError | BiocParallelParam objects |
| bpstopOnError-method | BiocParallelParam objects |
| bpstopOnError<- | BiocParallelParam objects |
| bpstopOnError<--method | BiocParallelParam objects |
| bptasks | BiocParallelParam objects |
| bptasks-method | BiocParallelParam objects |
| bptasks<- | BiocParallelParam objects |
| bptasks<--method | BiocParallelParam objects |
| bpthreshold | BiocParallelParam objects |
| bpthreshold-method | BiocParallelParam objects |
| bpthreshold-method | Enable simple network of workstations (SNOW)-style parallel evaluation |
| bpthreshold<- | BiocParallelParam objects |
| bpthreshold<--method | Enable serial evaluation |
| bpthreshold<--method | Enable simple network of workstations (SNOW)-style parallel evaluation |
| bptimeout | BiocParallelParam objects |
| bptimeout-method | BiocParallelParam objects |
| bptimeout<- | BiocParallelParam objects |
| bptimeout<--method | BiocParallelParam objects |
| bptry | Try expression evaluation, recovering from bperror signals |
| bpvalidate | Tools for developing functions for parallel execution in distributed memory |
| BPValidate-class | Tools for developing functions for parallel execution in distributed memory |
| bpvec | Parallel, vectorized evaluation |
| bpvec-method | Parallel, vectorized evaluation |
| bpvectorize | Transform vectorized functions into parallelized, vectorized function |
| bpvectorize-method | Transform vectorized functions into parallelized, vectorized function |
| bpworkers | BiocParallelParam objects |
| bpworkers-method | Enable parallelization on batch systems |
| bpworkers-method | Enable parallelization on batch systems |
| bpworkers-method | BiocParallelParam objects |
| bpworkers-method | Enable parallel evaluation using registered dopar backend |
| bpworkers-method | Enable serial evaluation |
| bpworkers-method | Enable simple network of workstations (SNOW)-style parallel evaluation |
| bpworkers<- | BiocParallelParam objects |
| bpworkers<--method | Enable multi-core parallel evaluation |
| bpworkers<--method | Enable simple network of workstations (SNOW)-style parallel evaluation |
-- C --
| coerce-method | Enable parallel evaluation using registered dopar backend |
| coerce-method | Enable simple network of workstations (SNOW)-style parallel evaluation |
-- D --
| DoparParam | Enable parallel evaluation using registered dopar backend |
| DoparParam-class | Enable parallel evaluation using registered dopar backend |
-- I --
| ipcid | Inter-process locks and counters |
| ipclock | Inter-process locks and counters |
| ipclocked | Inter-process locks and counters |
| ipcremove | Inter-process locks and counters |
| ipcreset | Inter-process locks and counters |
| ipctrylock | Inter-process locks and counters |
| ipcunlock | Inter-process locks and counters |
| ipcvalue | Inter-process locks and counters |
| ipcyield | Inter-process locks and counters |
-- L --
| length-method | Enable multi-core parallel evaluation |
| length-method | Enable serial evaluation |
-- M --
| MulticoreParam | Enable multi-core parallel evaluation |
| MulticoreParam-class | Enable multi-core parallel evaluation |
| multicoreWorkers | Enable multi-core parallel evaluation |
-- P --
| print.remote_error | BiocParallelParam objects |
-- R --
| register | Maintain a global registry of available back-end Params |
| registered | Maintain a global registry of available back-end Params |
| R_PARALLELLY_AVAILABLECORES_FALLBACK | Enable simple network of workstations (SNOW)-style parallel evaluation |
-- S --
| SerialParam | Enable serial evaluation |
| SerialParam-class | Enable serial evaluation |
| show-method | Enable parallelization on batch systems |
| show-method | Enable parallelization on batch systems |
| show-method | BiocParallelParam objects |
| show-method | Enable parallel evaluation using registered dopar backend |
| show-method | Enable multi-core parallel evaluation |
| show-method | Enable simple network of workstations (SNOW)-style parallel evaluation |
| show-method | Tools for developing functions for parallel execution in distributed memory |
| SnowParam | Enable simple network of workstations (SNOW)-style parallel evaluation |
| SnowParam-class | Enable simple network of workstations (SNOW)-style parallel evaluation |
| snowWorkers | Enable simple network of workstations (SNOW)-style parallel evaluation |
-- misc --
| .BiocParallelParam_prototype | Developer interface |
| .bpiterate_impl | Developer interface |
| .bplapply_impl | Developer interface |
| .bpstart_impl | Developer interface |
| .bpstop_impl | Developer interface |
| .bpworker_impl | Developer interface |
| .close | Developer interface |
| .close-method | Developer interface |
| .close-method | Enable multi-core parallel evaluation |
| .prototype_update | Developer interface |
| .recv | Developer interface |
| .recv-method | Developer interface |
| .recv-method | Enable multi-core parallel evaluation |
| .recv_all | Developer interface |
| .recv_all-method | Developer interface |
| .recv_all-method | Enable multi-core parallel evaluation |
| .recv_any | Developer interface |
| .recv_any-method | Developer interface |
| .recv_any-method | Enable multi-core parallel evaluation |
| .send | Developer interface |
| .send-method | Developer interface |
| .send-method | Enable multi-core parallel evaluation |
| .send_all | Developer interface |
| .send_all-method | Developer interface |
| .send_to | Developer interface |
| .send_to-method | Developer interface |
| .send_to-method | Enable multi-core parallel evaluation |