Get data from NCBI Gene Expression Omnibus (GEO)

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Documentation for package ‘GEOquery’ version 2.62.2

• DESCRIPTION file.
• User guides, package vignettes and other documentation.

Help Pages

Accession	Generic functions for GEOquery
Accession-method	Class "GEOData"
Accession-method	Class "GEODataTable"
coercion	Convert a GDS data structure to a BioConductor data structure
Columns	Generic functions for GEOquery
Columns-method	Class "GEOData"
Columns-method	Class "GEODataTable"
dataTable	Generic functions for GEOquery
dataTable-method	Class "GEOData"
dataTable-method	Class "GEODataTable"
GDS-class	Class "GDS"
GDS2eSet	Convert a GDS data structure to a BioConductor data structure
GDS2MA	Convert a GDS data structure to a BioConductor data structure
GEOData-accessors	Generic functions for GEOquery
GEOData-class	Class "GEOData"
GEODataTable-class	Class "GEODataTable"
getDirListing	get a directory listing from NCBI GEO
getGEO	Get a GEO object from NCBI or file
getGEOfile	Download a file from GEO soft file to the local machine
getGEOSuppFiles	Get Supplemental Files from GEO
getGSEDataTables	Get GSE data tables from GEO into R data structures.
GPL	Class "GPL"
GPL-class	Class "GPL"
GPL-method	Class "GPL"
GPLList	Generic functions for GEOquery
GPLList-method	Class "GSE"
GSE-class	Class "GSE"
GSM-class	Class "GSM"
GSMList	Generic functions for GEOquery
GSMList-method	Class "GSE"
gunzip	Gunzip a file
Meta	Generic functions for GEOquery
Meta-method	Class "GEOData"
Meta-method	Class "GEODataTable"
Meta-method	Class "GSE"
parseGDS	Parse GEO text
parseGEO	Parse GEO text
parseGPL	Parse GEO text
parseGSE	Parse GEO text
parseGSM	Parse GEO text
show-method	Class "GEOData"
show-method	Class "GEODataTable"
Table	Generic functions for GEOquery
Table-method	Class "GEOData"
Table-method	Class "GEODataTable"