MAVIS
1.3.0
  • About
  • Running the Pipeline
  • MAVIS standard input file format
  • Reference Input Files
  • Configuration and Settings
  • Supported SV Callers
  • Illustrations
  • Frequently Asked Questions
  • Theory and Models
  • Guidelines for Contributors
  • Package Documentation
  • Glossary
  • Literature
MAVIS
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  • mavis package
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mavis package¶

Subpackages¶

  • mavis.annotate package
    • Submodules
      • base module
      • constants module
      • file_io module
      • fusion module
      • genomic module
      • main module
      • protein module
      • splicing module
      • variant module
    • Module contents
      • Sub-package Documentation
        • Types of Output Files
        • Algorithm Overview
        • Levels of Annotations
        • Overview of Class Relationships
  • mavis.bam package
    • Submodules
      • cache module
      • cigar module
      • read module
      • stats module
    • Module contents
  • mavis.cluster package
    • Submodules
      • cluster module
      • constants module
      • main module
    • Module contents
      • Sub-package Documentation
        • Types of Output Files
        • Algorithm Overview
  • mavis.illustrate package
    • Submodules
      • constants module
      • diagram module
      • elements module
      • scatter module
      • util module
    • Module contents
  • mavis.pairing package
    • Submodules
      • constants module
      • main module
      • pairing module
    • Module contents
      • Sub-package Documentation
        • Output Files
        • Algorithm Overview
  • mavis.summary package
    • Submodules
      • constants module
      • main module
      • summary module
    • Module contents
      • Sub-package Documentation
        • Output Files
        • Algorithm Overview
  • mavis.validate package
    • Submodules
      • base module
      • call module
      • constants module
      • evidence module
      • main module
    • Module contents
      • Sub-package Documentation
        • Types of Output Files
        • Algorithm Overview

Submodules¶

  • align module
  • assemble module
  • blat module
  • breakpoint module
  • checker module
  • config module
  • constants module
  • error module
  • interval module
  • main module
  • submit module
  • tools module
  • util module

Module contents¶

holds submodules related to structural variants


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