../bin/HLAminer.pl [v1.2] Derivation of HLA class I and II predictions from Shotgun sequence datasets -b tig_vs_hla-ncbi.coord -r hla_vs_tig-ncbi.coord -c TASRhla200.contigs -a NA -e 0 -h ../database/HLA_ABC_CDS.fasta -p ../database/hla_nom_p.txt -z 200 -i 99 -q 30 -s 1000 -n 0 Alignments to HLA ----------------- legend +:Coding variant seen by another contig previously RBH:Reciprocal Best Hit (if applicable) Contig/Read pair,HLA [% HSP/% CONTIG/READ PAIR] contig32|size230|read16|cov7.03,B*54:15, [99.13 %H/99.13 %C] RBH contig12|size439|read74|cov17.03,C*04:09N, [100.00 %H/93.39 %C] contig3|size357|read73|cov20.65,A*23:01:01, [100.00 %H/78.15 %C] contig3|size357|read73|cov20.65,A*23:19N, [100.00 %H/78.15 %C] contig3|size357|read73|cov20.65,A*23:06, [100.00 %H/78.15 %C] contig3|size357|read73|cov20.65,A*23:38N, [100.00 %H/78.15 %C] contig3|size357|read73|cov20.65,A*23:09, [100.00 %H/78.15 %C] contig3|size357|read73|cov20.65,A*23:26, [100.00 %H/78.15 %C] contig56|size349|read15|cov4.34,B*39:06:02, [100.00 %H/98.28 %C] contig56|size349|read15|cov4.34,B*39:50, [100.00 %H/98.28 %C] contig56|size349|read15|cov4.34,B*39:34, [100.00 %H/98.28 %C] contig56|size349|read15|cov4.34,B*39:57, [100.00 %H/98.28 %C] contig56|size349|read15|cov4.34,B*39:33, [100.00 %H/98.28 %C] contig56|size349|read15|cov4.34,B*39:90, [100.00 %H/98.28 %C] contig56|size349|read15|cov4.34,B*39:102, [100.00 %H/98.28 %C] contig30|size224|read18|cov8.12,B*39:06:02,+ [100.00 %H/100.00 %C] RBH contig30|size224|read18|cov8.12,B*39:50,+ [100.00 %H/100.00 %C] RBH contig30|size224|read18|cov8.12,B*39:34,+ [100.00 %H/100.00 %C] RBH contig30|size224|read18|cov8.12,B*39:64, [100.00 %H/100.00 %C] RBH contig30|size224|read18|cov8.12,B*39:57,+ [100.00 %H/100.00 %C] RBH contig30|size224|read18|cov8.12,B*39:33,+ [100.00 %H/100.00 %C] RBH contig30|size224|read18|cov8.12,B*39:90,+ [100.00 %H/100.00 %C] RBH contig30|size224|read18|cov8.12,B*39:102,+ [100.00 %H/100.00 %C] RBH contig30|size224|read18|cov8.12,B*39:06:05, [100.00 %H/100.00 %C] RBH contig30|size224|read18|cov8.12,B*39:06:04, [100.00 %H/100.00 %C] RBH contig30|size224|read18|cov8.12,B*39:06:03, [100.00 %H/100.00 %C] RBH contig31|size472|read54|cov11.56,A*23:01:01,+ [100.00 %H/100.00 %C] RBH contig31|size472|read54|cov11.56,A*23:07N, [99.79 %H/100.00 %C] RBH contig31|size472|read54|cov11.56,A*23:26,+ [100.00 %H/100.00 %C] RBH contig31|size472|read54|cov11.56,A*23:17, [100.00 %H/100.00 %C] RBH contig31|size472|read54|cov11.56,A*23:01:13, [100.00 %H/100.00 %C] RBH contig31|size472|read54|cov11.56,A*23:69, [100.00 %H/100.00 %C] RBH contig31|size472|read54|cov11.56,A*23:01:05, [100.00 %H/100.00 %C] RBH contig31|size472|read54|cov11.56,A*23:20, [100.00 %H/100.00 %C] RBH contig31|size472|read54|cov11.56,A*23:18, [100.00 %H/100.00 %C] RBH contig31|size472|read54|cov11.56,A*23:50, [100.00 %H/100.00 %C] RBH contig31|size472|read54|cov11.56,A*23:58, [100.00 %H/100.00 %C] RBH contig19|size571|read61|cov10.79,A*03:48, [99.12 %H/99.12 %C] RBH contig19|size571|read61|cov10.79,A*03:168N, [99.12 %H/99.12 %C] RBH contig19|size571|read61|cov10.79,A*03:01:01:01, [99.12 %H/99.12 %C] RBH contig19|size571|read61|cov10.79,A*03:107, [99.12 %H/99.12 %C] RBH contig19|size571|read61|cov10.79,A*03:36N, [99.12 %H/99.12 %C] RBH contig19|size571|read61|cov10.79,A*03:196, [99.12 %H/99.12 %C] RBH contig19|size571|read61|cov10.79,A*03:193, [99.12 %H/99.12 %C] RBH contig19|size571|read61|cov10.79,A*03:195, [99.12 %H/99.12 %C] RBH contig19|size571|read61|cov10.79,A*03:224, [99.12 %H/99.12 %C] RBH contig19|size571|read61|cov10.79,A*03:01:03, [99.12 %H/99.12 %C] RBH contig19|size571|read61|cov10.79,A*03:01:01:03, [99.12 %H/99.12 %C] RBH contig19|size571|read61|cov10.79,A*03:72, [99.12 %H/99.12 %C] RBH contig19|size571|read61|cov10.79,A*03:159, [99.12 %H/99.12 %C] RBH contig19|size571|read61|cov10.79,A*03:01:40, [99.12 %H/99.12 %C] RBH contig19|size571|read61|cov10.79,A*03:01:04, [99.12 %H/99.12 %C] RBH contig19|size571|read61|cov10.79,A*03:01:08, [99.12 %H/99.12 %C] RBH contig19|size571|read61|cov10.79,A*03:12, [99.12 %H/99.12 %C] RBH contig19|size571|read61|cov10.79,A*03:01:39, [99.12 %H/99.12 %C] RBH contig19|size571|read61|cov10.79,A*03:181, [99.12 %H/99.12 %C] RBH contig19|size571|read61|cov10.79,A*03:01:01:02N, [99.12 %H/99.12 %C] RBH contig29|size520|read53|cov10.29,A*03:48,+ [100.00 %H/85.77 %C] contig29|size520|read53|cov10.29,A*03:168N,+ [100.00 %H/85.77 %C] contig29|size520|read53|cov10.29,A*03:01:01:01,+ [100.00 %H/85.77 %C] contig29|size520|read53|cov10.29,A*03:107,+ [100.00 %H/85.77 %C] contig29|size520|read53|cov10.29,A*03:36N,+ [100.00 %H/85.77 %C] contig29|size520|read53|cov10.29,A*03:196,+ [100.00 %H/85.77 %C] contig29|size520|read53|cov10.29,A*03:193,+ [100.00 %H/85.77 %C] contig29|size520|read53|cov10.29,A*03:195,+ [100.00 %H/85.77 %C] contig29|size520|read53|cov10.29,A*03:224,+ [100.00 %H/85.77 %C] contig29|size520|read53|cov10.29,A*03:01:03,+ [100.00 %H/85.77 %C] contig29|size520|read53|cov10.29,A*03:01:01:03,+ [100.00 %H/85.77 %C] contig29|size520|read53|cov10.29,A*03:11N, [100.00 %H/85.77 %C] contig29|size520|read53|cov10.29,A*03:03N, [100.00 %H/85.77 %C] contig29|size520|read53|cov10.29,A*03:02:01, [100.00 %H/85.77 %C] contig29|size520|read53|cov10.29,A*03:197N, [100.00 %H/85.77 %C] contig29|size520|read53|cov10.29,A*03:204, [100.00 %H/85.77 %C] contig29|size520|read53|cov10.29,A*03:21N, [100.00 %H/85.77 %C] contig29|size520|read53|cov10.29,A*03:194, [100.00 %H/85.77 %C] contig29|size520|read53|cov10.29,A*03:77, [100.00 %H/85.77 %C] contig29|size520|read53|cov10.29,A*03:223, [100.00 %H/85.77 %C] contig29|size520|read53|cov10.29,A*03:02:04, [100.00 %H/85.77 %C] contig29|size520|read53|cov10.29,A*03:225, [100.00 %H/85.77 %C] contig29|size520|read53|cov10.29,A*03:200Q, [100.00 %H/85.77 %C] contig29|size520|read53|cov10.29,A*03:39, [100.00 %H/85.77 %C] contig15|size248|read28|cov11.40,B*44:03:01, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*44:03:02, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*44:184, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*44:03:04, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*44:03:03, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*44:03:20, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*44:130, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*44:50:02, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*51:42, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*44:26, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*44:46, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*44:13, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*44:03:21, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*44:07, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*44:77, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*44:03:16, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*44:110, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*44:61N, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*44:109, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*44:57, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*44:39, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*44:65, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*44:129, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*44:81, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*44:03:18, [100.00 %H/100.00 %C] RBH contig15|size248|read28|cov11.40,B*44:03:07, [100.00 %H/100.00 %C] RBH contig14|size411|read94|cov23.10,B*39:06:02,+ [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*39:50,+ [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*39:34,+ [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*39:64,+ [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*14:01:01, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*14:07N, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*67:01:02, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*38:02:01, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*39:01:21, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*67:02, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*14:10, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*39:22, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*39:02:02, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*39:01:01:03, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*14:06:01, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*14:46, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*39:14, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*39:13:01, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*39:11, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*39:08, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*39:09:01, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*39:38Q, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*39:01:01:02L, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*39:104, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*39:05:01, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*39:13:02, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*39:04, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*38:01:01, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*39:10:01, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*39:06:01, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*38:18, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*39:07, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*14:02:01, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*39:01:01:01, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*67:01:01, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*39:24:01, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*38:14, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*39:03, [99.72 %H/85.89 %C] contig14|size411|read94|cov23.10,B*38:01:08, [99.72 %H/85.89 %C] contig38|size322|read28|cov8.78,C*04:09N,+ [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:01:01:01, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:26, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:01:54, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:162, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:01:01:05, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:01:01:02, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:165, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:42:01, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:84, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:71, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:01:01:06, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:79, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:01:01:04, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:90, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:198, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:195, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:01:01:03, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:161, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:106, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:146, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:82, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:200, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:42:02, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:01:11, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:01:03, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:28, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:01:57, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:30, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:01:10, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:187, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:119, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:29, [100.00 %H/99.38 %C] RBH contig38|size322|read28|cov8.78,C*04:199, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:159, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:164, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*18:02, [100.00 %H/99.38 %C] RBH contig38|size322|read28|cov8.78,C*04:03:02, [100.00 %H/99.38 %C] RBH contig38|size322|read28|cov8.78,C*04:33, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:70, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:129, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:01:21, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:112, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:191N, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:128, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:11, [100.00 %H/99.38 %C] RBH contig38|size322|read28|cov8.78,C*18:01, [100.00 %H/99.38 %C] RBH contig38|size322|read28|cov8.78,C*04:36, [100.00 %H/99.38 %C] RBH contig38|size322|read28|cov8.78,C*04:07, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:01:15, [100.00 %H/99.38 %C] contig38|size322|read28|cov8.78,C*04:03:01, [100.00 %H/99.38 %C] contig13|size208|read21|cov10.20,B*44:03:01,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:03:02,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:03:28, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:21, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:02:01:01, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:184,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:49, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:03:04,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:02:01:03, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:02:09, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:03:03,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:03:20,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:220, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:130,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:04, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:02:32, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:50:02,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*51:42,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:26,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:23N, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:19N, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:46,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:59:01, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:13,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:03:21,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:07,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:177, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:77,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:115, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:02:01:02S, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:218, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:03:16,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:56N, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:08, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:173, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:02:37, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:53, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:02:38, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:05:01, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:110,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:09, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:61N,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:101, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:16, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*27:47, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:109,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:57,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:39,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:152, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:65,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:02:27, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:137, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:129,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:81,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:03:18,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:64:02, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:52N, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:03:07,+ [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:02:05, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:02:02, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*15:247, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:83, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:17, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:151, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:117, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:113, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:211, [100.00 %H/100.00 %C] RBH contig13|size208|read21|cov10.20,B*44:51, [100.00 %H/100.00 %C] RBH contig4|size231|read23|cov10.06,A*23:01:01,+ [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*23:19N,+ [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*23:06,+ [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*23:07N,+ [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*23:38N,+ [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*23:09,+ [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*23:17,+ [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:251, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:02:01:01, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:144, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:02:84, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:234, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:02:79, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:261, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:264, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:54, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:278N, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:150, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:11N, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:233, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:02:75, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:309, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:194, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:02:10, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:02:33, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:255, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:61, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:269, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:27, [100.00 %H/97.40 %C] RBH contig4|size231|read23|cov10.06,A*24:260, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:265, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:36N, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:02:04, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:235, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:273, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:03:01, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:250, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:53, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:02:83, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:02:03Q, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:143, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:267, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:314, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:256, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:313, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:02:36, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:51, [100.00 %H/97.40 %C] RBH contig4|size231|read23|cov10.06,A*24:226:02, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:02:76, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:132N, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:10:01, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:21:02, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:02:80, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:272, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:04, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:07:01, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:02:82, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:02:32, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:86N, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:02:77, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:02:74, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:02:40, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:231, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:271, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:263, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:128, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:215, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:249, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:02:01:02L, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:02:78, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:02:81, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:262, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:02:01:03, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:22, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:129, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:02:31, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:270, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:09N, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:248, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:266, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:268, [100.00 %H/97.40 %C] contig4|size231|read23|cov10.06,A*24:02:34, [100.00 %H/97.40 %C] contig41|size339|read49|cov14.60,B*44:03:01,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*39:06:02,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*39:50,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*39:34,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:03:02,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:03:28,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:21,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:02:01:01,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:184,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:49,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:02:01:03,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:02:09,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:03:20,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:220,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:130,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:04,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:02:32,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:50:02,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*51:42,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:26,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:23N,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:19N,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:46,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:59:01,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*39:64,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:13,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:03:21,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:07,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*14:01:01,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*14:07N,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*67:01:02,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*44:218,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*38:02:01,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:01:21,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*67:02,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*44:56N,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:08,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*14:10,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*44:02:37,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:150, [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*44:02:38,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*39:22,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:02:02,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*44:05:01,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*39:01:01:03,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*44:09,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*14:06:01,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*14:46,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:14,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:13:01,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:11,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:08,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:09:01,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*27:47,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*39:38Q,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:01:01:02L,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:104,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:05:01,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:13:02,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:04,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*38:01:01,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:10:01,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:06:01,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*38:18,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:07,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*44:152,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*14:02:01,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:01:01:01,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*67:01:01,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:24:01,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*38:14,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*44:02:17, [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*39:03,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*44:137,+ [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*38:01:08,+ [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*44:203, [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*14:34, [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:60, [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*38:28, [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:87N, [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*38:47, [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*38:50, [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:85, [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*38:02:06, [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*38:46, [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:01:03, [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:58, [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:49, [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:01:17, [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:02:01, [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*38:02:07, [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:01:16, [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*38:49, [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*44:03:27, [99.71 %H/99.71 %C] contig41|size339|read49|cov14.60,B*67:04, [99.71 %H/99.71 %C] RBH contig41|size339|read49|cov14.60,B*39:88, [99.71 %H/99.71 %C] RBH contig11|size352|read38|cov10.90,B*44:03:01,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:03:28,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:21,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:02:01:01,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:49,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:03:04,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:02:01:03,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:02:09,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:03:03,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:220,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:04,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:02:32,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:23N,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:19N,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:59:01,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:177,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:115,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:02:01:02S,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:173,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:150,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:53,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:101,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:16,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:02:27,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:02:17,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:203,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:64:02,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:52N,+ [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:188, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:120, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:132, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:126:01, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:03:23, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:79:02, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:147, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:102, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:190, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:03:11, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:118, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:02:08, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:91, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:169, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:74, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:66, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:175, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:29, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:142, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:160Q, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:02:11, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:02:25, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:02:35, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:178, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:126:02, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:114, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:174, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:215, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:30, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:89, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:68, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:182, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:202, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:02:03, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:02:39, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:73, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:146, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:159, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:03:14, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:179, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:94, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:187, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:141, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:59:02, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:27:02, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:35, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:02:18, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:02:04, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:104, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:121, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:03:09, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:116, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:76, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:148, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:28:02, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:03:24, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:27:01, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:55, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:02:36, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:02:23, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:92, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:165, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:192, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:195N, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:79:01, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:112, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:163, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:71, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:37:01, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:02:28, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:03:17, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:186, [100.00 %H/100.00 %C] RBH contig11|size352|read38|cov10.90,B*44:108N, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:09N,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:01:01,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:26,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:54,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:162,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:01:05,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:01:02,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:165,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:42:01,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:84,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:71,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:01:06,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:79,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:01:04,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:90,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:198,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:195,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:01:03,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:161,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:106,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:146,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:82,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:200,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:42:02,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:11,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:03,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:28,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:57,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:30,+ [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:38, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:206, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:144, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:94:02, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:58, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:28, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:67, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:203N, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:48, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:149, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:07, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:08, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:41, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:145, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:53, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:67, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:08, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:19, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:13, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:04:01, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:140, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:31, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:121, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:196, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:101, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:126, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:113, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:65, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:155, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:16, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:53, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:204, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:47, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:38, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:32, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:13, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:122, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:32, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:37, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:61, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:59, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:179, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:04:02, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:64:01, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:14, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:34, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:43, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:176, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:18, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:46, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:111, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:05, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:43, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:177, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:25, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:94:01, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:85, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:163, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:64:02, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:142, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:156, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:174, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:133, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:41, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:68, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:33, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:09, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:65, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:06, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:184, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:139, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:39, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:168, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:152, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:62, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:44, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:40, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:68, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:166, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:180, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:77, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:63, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:66, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:158, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:120, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:183, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:61, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:01:39, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:188, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:201, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:143, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:193, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:18, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:51, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:24, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:95N, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:59Q, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:189, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:34, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:167, [100.00 %H/100.00 %C] RBH contig20|size311|read29|cov9.42,C*04:103, [100.00 %H/100.00 %C] RBH ---------------------------------------------------------------------- Gene,HLA Supertype/Group,Protein coding allele,Score,Validated by N Contigs,x=contig seen,Chance (%),Expect (Eval) value,Confidence Score (-10 * log10(P)) *Score = sum(Sz * cov * seq.id. * 2 [RBH]) *P HLA = (P tig1 is HLA * P HLA is tig 1) * (P tig2 is HLA * P HLA is tig 2) * .. * (P tig(n) is HLA * P HLA is tig n) where P tig x is HLA = sum(P HLA for tig x) ---------------------------------------------------------------------- HLA-A A,A*23,A*23:01:01,18213.85,3,,100.0000,4.32e-09,83.6 A,A*03,A*03:195,15779.544,2,,99.9999,1.44e-06,58.4 A,A*03,A*03:48,15779.544,2,,99.9999,1.44e-06,58.4 A,A*03,A*03:224,15779.544,2,,99.9999,1.44e-06,58.4 A,A*03,A*03:01:01:01,15779.544,2,,99.9999,1.44e-06,58.4 A,A*03,A*03:107,15779.544,2,,99.9999,1.44e-06,58.4 A,A*03,A*03:01:03,15779.544,2,,99.9999,1.44e-06,58.4 A,A*03,A*03:193,15779.544,2,,99.9999,1.44e-06,58.4 A,A*03,A*03:196,15779.544,2,,99.9999,1.44e-06,58.4 A,A*03,A*03:01:01:03,15779.544,2,,99.9999,1.44e-06,58.4 HLA-B B,B*44,B*44:03:01,21388.2366,4,,100.0000,6.05e-12,112.2 B,B*39,B*39:34,17807.4071,4,x,100.0000,5.17e-11,102.9 B,B*39,B*39:06:02,17807.4071,4,x,100.0000,5.17e-11,102.9 B,B*39,B*39:50,17807.4071,4,x,100.0000,5.17e-11,102.9 B,B*54,B*54:15,3191.986,1,,99.9988,1.20e-05,49.2 HLA-C C,C*04,C*04:01:01:01,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:26,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:01:54,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:162,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:01:01:03,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:161,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:106,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:01:01:05,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:01:01:02,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:146,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:165,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:82,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:42:01,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:200,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:84,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:71,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:01:01:06,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:79,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:01:01:04,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:90,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:198,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:42:02,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:01:11,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:01:03,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:195,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:28,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:01:57,8158.0288,2,,99.9960,3.96e-05,44.0 C,C*04,C*04:30,8158.0288,2,,99.9960,3.96e-05,44.0 HLA-E HLA-F HLA-G HLA-DPA1 HLA-DPB1 HLA-DQA1 HLA-DQB1 HLA-DRA HLA-DRB1 HLA-DRB2 HLA-DRB3 HLA-DRB4 HLA-DRB5 HLA-DRB6 HLA-DRB7 HLA-DRB8 HLA-DRB9 ------------------------------------------------------------------------------------------ SUMMARY MOST LIKELY HLA-I ALLELES (Confidence (-10 * log10(Eval)) >= 30 Score >= 1000) Gene,Prediction rank,Group,Allele,Score,Expect (Eval) value,Confidence (-10 * log10(Eval)) ------------------------------------------------------------------------------------------ HLA-A Prediction #1 - A*23 A,1,A*23,A*23:01P,18213.85,4.32e-09,83.6 Prediction #2 - A*03 A,2,A*03,A*03:01P,15779.544,1.44e-06,58.4 A,2,A*03,A*03:224,15779.544,1.44e-06,58.4 A,2,A*03,A*03:195,15779.544,1.44e-06,58.4 A,2,A*03,A*03:193,15779.544,1.44e-06,58.4 A,2,A*03,A*03:48,15779.544,1.44e-06,58.4 A,2,A*03,A*03:196,15779.544,1.44e-06,58.4 A,2,A*03,A*03:107,15779.544,1.44e-06,58.4 HLA-B Prediction #1 - B*44 B,1,B*44,B*44:03P,21388.2366,6.05e-12,112.2 Prediction #2 - B*39 B,2,B*39,B*39:50,17807.4071,5.17e-11,102.9 B,2,B*39,B*39:34,17807.4071,5.17e-11,102.9 B,2,B*39,B*39:06P,17807.4071,5.17e-11,102.9 Prediction #3 - B*54 B,3,B*54,B*54:15,3191.986,1.20e-05,49.2 HLA-C Prediction #1 - C*04 C,1,C*04,C*04:200,8158.0288,3.96e-05,44.0 C,1,C*04,C*04:198,8158.0288,3.96e-05,44.0 C,1,C*04,C*04:26,8158.0288,3.96e-05,44.0 C,1,C*04,C*04:71,8158.0288,3.96e-05,44.0 C,1,C*04,C*04:01P,8158.0288,3.96e-05,44.0 C,1,C*04,C*04:90,8158.0288,3.96e-05,44.0 C,1,C*04,C*04:42P,8158.0288,3.96e-05,44.0 HLA-E HLA-F HLA-G ------------------------------------------------------------------------------------------ SUMMARY MOST LIKELY HLA-II ALLELES (Confidence (-10 * log10(Eval)) >= 30 Score >= 1000) Gene,Prediction rank,Group,Allele,Score,Expect (Eval) value,Confidence (-10 * log10(Eval)) ------------------------------------------------------------------------------------------ HLA-DPA1 HLA-DPB1 HLA-DQA1 HLA-DQB1 HLA-DRA HLA-DRB1 HLA-DRB2 HLA-DRB3 HLA-DRB4 HLA-DRB5 HLA-DRB6 HLA-DRB7 HLA-DRB8 HLA-DRB9